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Predicting specificity in bZIP coiled-coil protein interactions
Jessica H Fong, Amy E Keating, Mona Singh
Genome Biol. 2004; 5(2): R11. Published online 2004 January 16.
PMCID:
PMC395749
Abstract Full Text PDF–473K Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

Prediction of peptides binding to the PKA RIIα subunit using a hierarchical strategy
Tingjun Hou, Youyong Li, Wei Wang
Bioinformatics. 2011 July 1; 27(13): 1814–1821. Published online 2011 May 17. doi: 10.1093/bioinformatics/btr294
PMCID:
PMC3117377
Free in PMC on 2012/07/01
Design of peptide inhibitors that bind the bZIP domain of Epstein-Barr virus protein BZLF1
T. Scott Chen, Aaron W. Reinke, Amy E. Keating
J Mol Biol. Author manuscript; available in PMC 2012 April 29.
Published in final edited form as: J Mol Biol. 2011 April 29; 408(2): 304–320. Published online 2011 February 25. doi: 10.1016/j.jmb.2011.02.046
PMCID:
PMC3087387
Abstract Full Text PDF–2.3M
Complex Networks Govern Coiled-Coil Oligomerization – Predicting and Profiling by Means of a Machine Learning Approach
Carsten C. Mahrenholz, Ingrid G. Abfalter, Ulrich Bodenhofer, Rudolf Volkmer, Sepp Hochreiter
Mol Cell Proteomics. 2011 May; 10(5): M110.004994. Published online 2011 February 2. doi: 10.1074/mcp.M110.004994
PMCID:
PMC3098589
Abstract Full Text
Exploiting Amino Acid Composition for Predicting Protein-Protein Interactions
Sushmita Roy, Diego Martinez, Harriett Platero, Terran Lane, Margaret Werner-Washburne
PLoS One. 2009; 4(11): e7813. Published online 2009 November 20. doi: 10.1371/journal.pone.0007813
PMCID:
PMC2775920
Abstract Full Text PDF–1.2M Supplementary Material
From evidence to inference: probing the evolution of protein interaction networks
Oliver Ratmann, Carsten Wiuf, John W. Pinney
HFSP J. 2009 October; 3(5): 290–306. Published online 2009 October 19. doi: 10.2976/1.3167215
PMCID:
PMC2801530
Abstract Full Text PDF–380K
Identification of a novel DNA binding site and a transcription target for ATF5 in C6 glioma and MCF-7 breast cancer cells
Guangfu Li, Wenhong Li, James M. Angelastro, Lloyd A. Greene, David X. Liu
Mol Cancer Res. Author manuscript; available in PMC 2010 June 16.
Published in final edited form as: Mol Cancer Res. 2009 June; 7(6): 933–943. Published online 2009 June 16. doi: 10.1158/1541-7786.MCR-08-0365
PMCID:
PMC2880174
Abstract Full Text PDF–642K Supplementary Material
The Importance of Being Flexible: The Case of Basic Region Leucine Zipper Transcriptional Regulators
Maria Miller
Curr Protein Pept Sci. Author manuscript; available in PMC 2009 December 30.
Published in final edited form as: Curr Protein Pept Sci. 2009 June; 10(3): 244–269.
PMCID:
PMC2800128
Abstract Full Text PDF–3.6M
Design of protein-interaction specificity affords selective bZIP-binding peptides
Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating
Nature. Author manuscript; available in PMC 2009 October 16.
Published in final edited form as: Nature. 2009 April 16; 458(7240): 859–864. doi: 10.1038/nature07885
PMCID:
PMC2748673
Abstract Full Text PDF–1.2M Supplementary Material
Predicting DNA recognition by Cys2His2 zinc finger proteins
Anton V. Persikov, Robert Osada, Mona Singh
Bioinformatics. 2009 January 1; 25(1): 22–29. Published online 2008 November 13. doi: 10.1093/bioinformatics/btn580
PMCID:
PMC2638941
Abstract Full Text PDF–274K Supplementary Material
Predicting helix orientation for coiled-coil dimers
James R. Apgar, Karl N. Gutwin, Amy E. Keating
Proteins. Author manuscript; available in PMC 2009 August 15.
Published in final edited form as: Proteins. 2008 August 15; 72(3): 1048–1065. doi: 10.1002/prot.22118
PMCID:
PMC2562949
Abstract Full Text PDF–1.4M Supplementary Material
Structural specificity in coiled-coil interactions
Gevorg Grigoryan, Amy E. Keating
Curr Opin Struct Biol. Author manuscript; available in PMC 2009 August 1.
Published in final edited form as: Curr Opin Struct Biol. 2008 August; 18(4): 477–483. Published online 2008 June 12. doi: 10.1016/j.sbi.2008.04.008
PMCID:
PMC2567808
Abstract Full Text PDF–1.2M
Preferred side-chain constellations at antiparallel coiled-coil interfaces
Erik B. Hadley, Oliver D. Testa, Derek N. Woolfson, Samuel H. Gellman
Proc Natl Acad Sci U S A. 2008 January 15; 105(2): 530–535. Published online 2008 January 9. doi: 10.1073/pnas.0709068105
PMCID:
PMC2206570
Abstract Full Text PDF–1.3M Supplementary Material
Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
John W. Pinney, Grigoris D. Amoutzias, Magnus Rattray, David L. Robertson
Proc Natl Acad Sci U S A. 2007 December 18; 104(51): 20449–20453. Published online 2007 December 12. doi: 10.1073/pnas.0706339104
PMCID:
PMC2154451
Abstract Full Text PDF–386K Supplementary Material
Inhibition of Interferon Regulatory Factor 7 (IRF7)-Mediated Interferon Signal Transduction by the Kaposi's Sarcoma-Associated Herpesvirus Viral IRF Homolog vIRF3
Chul Hyun Joo, Young C. Shin, Michaela Gack, Liguo Wu, David Levy, Jae U. Jung
J Virol. 2007 August; 81(15): 8282–8292. Published online 2007 May 23. doi: 10.1128/JVI.00235-07
PMCID:
PMC1951281
Abstract Full Text PDF–680K
Ultra-Fast Evaluation of Protein Energies Directly from Sequence
Gevorg Grigoryan, Fei Zhou, Steve R Lustig, Gerbrand Ceder, Dane Morgan, Amy E Keating
PLoS Comput Biol. 2006 June; 2(6): e63. Prepublished online 2006 April 24. Published online 2006 June 16. doi: 10.1371/journal.pcbi.0020063
PMCID:
PMC1479088
Abstract Full Text PDF–527K
Semirational design of Jun-Fos coiled coils with increased affinity: Universal implications for leucine zipper prediction and design
Jody M. Mason, Mark A. Schmitz, Kristian M. Müller, Katja M. Arndt
Proc Natl Acad Sci U S A. 2006 June 13; 103(24): 8989–8994. Published online 2006 June 5. doi: 10.1073/pnas.0509880103
PMCID:
PMC1482553
Abstract Full Text PDF–706K Supplementary Material
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