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Antisense transcripts with rice full-length cDNAs
Naoki Osato, Hitomi Yamada, Kouji Satoh, Hisako Ooka, Makoto Yamamoto, Kohji Suzuki, Jun Kawai, Piero Carninci, Yasuhiro Ohtomo, Kazuo Murakami, Kenichi Matsubara, Shoshi Kikuchi, Yoshihide Hayashizaki
Genome Biol. 2004; 5(1): R5. Published online 2003 December 11.
PMCID:
PMC395737
Abstract Full Text PDF–258K

Is Cited by the Following 31 Articles in this Archive:

PlantNATsDB: a comprehensive database of plant natural antisense transcripts
Dijun Chen, Chunhui Yuan, Jian Zhang, Zhao Zhang, Lin Bai, Yijun Meng, Ling-Ling Chen, Ming Chen
Nucleic Acids Res. 2012 January; 40(D1): D1187–D1193. Published online 2011 November 3. doi: 10.1093/nar/gkr823
PMCID:
PMC3245084
Abstract Full Text PDF–4.4M
Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation
Xiaohui Wu, Man Liu, Bruce Downie, Chun Liang, Guoli Ji, Qingshun Q. Li, Arthur G. Hunt
Proc Natl Acad Sci U S A. 2011 July 26; 108(30): 12533–12538. Published online 2011 July 11. doi: 10.1073/pnas.1019732108
PMCID:
PMC3145732
Abstract Full Text PDF–506K Supplementary Material
Regulated Antisense Transcription Controls Expression of Cell-Type-Specific Genes in Yeast
Brian Gelfand, Janet Mead, Adrian Bruning, Nicholas Apostolopoulos, Vasisht Tadigotla, Vijaylakshmi Nagaraj, Anirvan M. Sengupta, Andrew K. Vershon
Mol Cell Biol. 2011 April; 31(8): 1701–1709. doi: 10.1128/MCB.01071-10
PMCID:
PMC3126345
Abstract Full Text PDF–1.1M
Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries
Takashi Matsumoto, Tsuyoshi Tanaka, Hiroaki Sakai, Naoki Amano, Hiroyuki Kanamori, Kanako Kurita, Ari Kikuta, Kozue Kamiya, Mayu Yamamoto, Hiroshi Ikawa, Nobuyuki Fujii, Kiyosumi Hori, Takeshi Itoh, Kazuhiro Sato
Plant Physiol. 2011 May; 156(1): 20–28. Published online 2011 March 17. doi: 10.1104/pp.110.171579
PMCID:
PMC3091036
Abstract Full Text PDF–336K
Experimental RNomics and genomic comparative analysis reveal a large group of species-specific small non-message RNAs in the silkworm Bombyx mori
Dandan Li, Yanhong Wang, Kun Zhang, Zhujin Jiao, Xiaopeng Zhu, Geir Skogerboe, Xiangqian Guo, Viswanathan Chinnusamy, Lijun Bi, Yongping Huang, Shuanglin Dong, Runsheng Chen, Yunchao Kan
Nucleic Acids Res. 2011 May; 39(9): 3792–3805. Published online 2011 January 10. doi: 10.1093/nar/gkq1317
PMCID:
PMC3089462
Abstract Full Text PDF–6.8M Supplementary Material
The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe
Ting Ni, Kang Tu, Zhong Wang, Shen Song, Han Wu, Bin Xie, Kristin C. Scott, Shiv I. Grewal, Yuan Gao, Jun Zhu
PLoS One. 2010; 5(12): e15271. Published online 2010 December 20. doi: 10.1371/journal.pone.0015271
PMCID:
PMC3004915
Abstract Full Text PDF–522K Supplementary Material
Characterization of the Rice PHO1 Gene Family Reveals a Key Role for OsPHO1;2 in Phosphate Homeostasis and the Evolution of a Distinct Clade in Dicotyledons
David Secco, Arnaud Baumann, Yves Poirier
Plant Physiol. 2010 March; 152(3): 1693–1704. Published online 2010 January 15. doi: 10.1104/pp.109.149872
PMCID:
PMC2832267
Abstract Full Text PDF–597K Supplementary Material
Rice MicroRNA Effector Complexes and Targets
Liang Wu, Qingqing Zhang, Huanyu Zhou, Fangrui Ni, Xueying Wu, Yijun Qi
Plant Cell. 2009 November; 21(11): 3421–3435. doi: 10.1105/tpc.109.070938
PMCID:
PMC2798332
Abstract Full Text PDF–1.6M Supplementary Material
Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array
Tristan E Coram, Matthew L Settles, Xianming Chen
BMC Genomics. 2009; 10: 253. Published online 2009 May 29. doi: 10.1186/1471-2164-10-253
PMCID:
PMC2694213
Abstract Full Text PDF–411K Supplementary Material
Characterization and expression profiles of miRNAs in rice seeds
Liang-Jiao Xue, Jing-Jing Zhang, Hong-Wei Xue
Nucleic Acids Res. 2009 February; 37(3): 916–930. Published online 2009 February. doi: 10.1093/nar/gkn998
PMCID:
PMC2647296
Abstract Full Text PDF–773K Supplementary Material
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
Besma Ben Amor, Sonia Wirth, Francisco Merchan, Philippe Laporte, Yves d’Aubenton-Carafa, Judith Hirsch, Alexis Maizel, Allison Mallory, Antoine Lucas, Jean Marc Deragon, Herve Vaucheret, Claude Thermes, Martin Crespi
Genome Res. 2009 January; 19(1): 57–69. doi: 10.1101/gr.080275.108
PMCID:
PMC2612962
Abstract Full Text PDF–934K
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
Xuefeng Zhou, Ramanjulu Sunkar, Hailing Jin, Jian-Kang Zhu, Weixiong Zhang
Genome Res. 2009 January; 19(1): 70–78. doi: 10.1101/gr.084806.108
PMCID:
PMC2612963
Abstract Full Text PDF–520K
rasiRNA pathway controls antisense expression of Drosophila telomeric retrotransposons in the nucleus
Sergey Shpiz, Dmitry Kwon, Yakov Rozovsky, Alla Kalmykova
Nucleic Acids Res. 2009 January; 37(1): 268–278. Published online 2009 January. doi: 10.1093/nar/gkn960
PMCID:
PMC2615633
Abstract Full Text PDF–5.5M Supplementary Material
Sense and antisense OsDof12 transcripts in rice
Dejun Li, Chunhua Yang, Xiaobing Li, Guobiao Ji, Lihuang Zhu
BMC Mol Biol. 2008; 9: 80. Published online 2008 September 17. doi: 10.1186/1471-2199-9-80
PMCID:
PMC2576344
Abstract Full Text PDF–441K
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu
BMC Mol Biol. 2008; 9: 6. Published online 2008 January 14. doi: 10.1186/1471-2199-9-6
PMCID:
PMC2262095
Abstract Full Text PDF–656K Supplementary Material
antiCODE: a natural sense-antisense transcripts database
Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, Haitao Zhao
BMC Bioinformatics. 2007; 8: 319. Published online 2007 August 30. doi: 10.1186/1471-2105-8-319
PMCID:
PMC1997216
Abstract Full Text PDF–445K
Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis
Stefan R. Henz, Jason S. Cumbie, Kristin D. Kasschau, Jan U. Lohmann, James C. Carrington, Detlef Weigel, Markus Schmid
Plant Physiol. 2007 July; 144(3): 1247–1255. doi: 10.1104/pp.107.100396
PMCID:
PMC1914114
Abstract Full Text PDF–794K Supplementary Material
Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets
Sebastian Oeder, Joerg Mages, Paul Flicek, Roland Lang
BMC Genomics. 2007; 8: 200. Published online 2007 June 28. doi: 10.1186/1471-2164-8-200
PMCID:
PMC1929078
Abstract Full Text PDF–901K
Magnaporthe grisea Infection Triggers RNA Variation and Antisense Transcript Expression in Rice
Malali Gowda, R.-C. Venu, Huameng Li, Chatchawan Jantasuriyarat, Songbiao Chen, Maria Bellizzi, Vishal Pampanwar, HyeRan Kim, Ralph A. Dean, Eric Stahlberg, Rod Wing, Cari Soderlund, Guo-Liang Wang
Plant Physiol. 2007 May; 144(1): 524–533. doi: 10.1104/pp.107.095653
PMCID:
PMC1913787
Abstract Full Text PDF–726K Supplementary Material
Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome
Lei Li, Xiangfeng Wang, Rajkumar Sasidharan, Viktor Stolc, Wei Deng, Hang He, Jan Korbel, Xuewei Chen, Waraporn Tongprasit, Pamela Ronald, Runsheng Chen, Mark Gerstein, Xing Wang Deng
PLoS ONE. 2007; 2(3): e294. Published online 2007 March 14. doi: 10.1371/journal.pone.0000294
PMCID:
PMC1808428
Abstract Full Text PDF–731K Supplementary Material
Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
Michal Lapidot, Yitzhak Pilpel
EMBO Rep. 2006 December; 7(12): 1216–1222. doi: 10.1038/sj.embor.7400857
PMCID:
PMC1794690
Abstract Full Text PDF–190K
NATsDB: Natural Antisense Transcripts DataBase
Yong Zhang, Jiongtang Li, Lei Kong, Ge Gao, Qing-Rong Liu, Liping Wei
Nucleic Acids Res. 2007 January; 35(Database issue): D156–D161. Published online 2006 November 1. doi: 10.1093/nar/gkl782
PMCID:
PMC1635336
Abstract Full Text PDF–659K
Competitive inhibition of natural antisense Sok-RNA interactions activates Hok-mediated cell killing in Escherichia coli
Omid R. Faridani, Abbas Nikravesh, Deo Prakash Pandey, Kenn Gerdes, Liam Good
Nucleic Acids Res. 2006 November; 34(20): 5915–5922. Published online 2006 October 25. doi: 10.1093/nar/gkl750
PMCID:
PMC1635323
Abstract Full Text PDF–528K
Prediction of trans-antisense transcripts in Arabidopsis thaliana
Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
Genome Biol. 2006; 7(10): R92. Published online 2006 October 13. doi: 10.1186/gb-2006-7-10-r92
PMCID:
PMC1794575
Abstract Full Text PDF–504K Supplementary Material
Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcriptionand organismic complexity
Miao Sun, Laurence D. Hurst, Gordon G. Carmichael, Jianjun Chen
Genome Res. 2006 July; 16(7): 922–933. doi: 10.1101/gr.5210006
PMCID:
PMC1484459
Abstract Full Text PDF–695K
A Novel Chimeric Gene, siren, With Retroposed Promoter Sequence in the Drosophila bipectinata Complex
Masafumi Nozawa, Tadashi Aotsuka, Koichiro Tamura
Genetics. 2005 December; 171(4): 1719–1727. doi: 10.1534/genetics.105.041699
PMCID:
PMC1456098
Abstract Full Text PDF–222K
Evolutionary Expansion, Gene Structure, and Expression of the Rice Wall-Associated Kinase Gene Family
Shibo Zhang, Calvin Chen, Lei Li, Ling Meng, Jaswinder Singh, Ning Jiang, Xing-Wang Deng, Zheng-Hui He, Peggy G. Lemaux
Plant Physiol. 2005 November; 139(3): 1107–1124. doi: 10.1104/pp.105.069005
PMCID:
PMC1283751
Abstract Full Text PDF–933K Supplementary Material
Transcriptome analysis of antigenic variation in Plasmodium falciparum - var silencing is not dependent on antisense RNA
Stuart A Ralph, Emmanuel Bischoff, Denise Mattei, Odile Sismeiro, Marie-Agnès Dillies, Ghislaine Guigon, Jean-Yves Coppee, Peter H David, Artur Scherf
Genome Biol. 2005; 6(11): R93. Published online 2005 October 31. doi: 10.1186/gb-2005-6-11-r93
PMCID:
PMC1297649
Abstract Full Text PDF–831K Supplementary Material
Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome
Moshe Havilio, Erez Y Levanon, Galia Lerman, Martin Kupiec, Eli Eisenberg
BMC Genomics. 2005; 6: 93. Published online 2005 June 16. doi: 10.1186/1471-2164-6-93
PMCID:
PMC1181813
Abstract Full Text PDF–397K Supplementary Material
Disclosing hidden transcripts: Mouse natural sense–antisense transcripts tend to be poly(A) negative and nuclear localized
Hidenori Kiyosawa, Nathan Mise, Shigeru Iwase, Yoshihide Hayashizaki, Kuniya Abe
Genome Res. 2005 April; 15(4): 463–474. doi: 10.1101/gr.3155905
PMCID:
PMC1074361
Abstract Full Text PDF–2.2M
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