Claudio U. Köser, Matthew T.G. Holden, Matthew J. Ellington, Edward J.P. Cartwright, Nicholas M. Brown, Amanda L. Ogilvy-Stuart, Li Yang Hsu, Claire Chewapreecha, Nicholas J. Croucher, Simon R. Harris, Mandy Sanders, Mark C. Enright, Gordon Dougan, Stephen D. Bentley, Julian Parkhill, Louise J. Fraser, Jason R. Betley, Ole B. Schulz-Trieglaff, Geoffrey P. Smith, Sharon J. Peacock
N Engl J Med.
Published in final edited form as: N Engl J Med. 2012 June 14; 366(24): 2267–2275. doi: 10.1056/NEJMoa1109910
PMCID:
PMC3715836

Is Cited by the Following 114 Articles in this Archive:

The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward
Frank M. Aarestrup
Philos Trans R Soc Lond B Biol Sci. 2015 June 5; 370(1670): 20140085. doi: 10.1098/rstb.2014.0085
PMCID:
PMC4424434
O. Martin Williams, Thomas Abeel, Nicola Casali, Keira Cohen, Alex S. Pym, Sarah B. Mungall, Christopher A. Desjardins, Anindo Banerjee, Francis Drobniewski, Ashlee M. Earl, Graham S. Cooke
Emerg Infect Dis. 2015 June; 21(6): 1082–1084. doi: 10.3201/eid2106.141903
PMCID:
PMC4451893
Sebastian Haller, Christoph Eller, Julia Hermes, Martin Kaase, Matthias Steglich, Aleksandar Radonić, Piotr Wojtek Dabrowski, Andreas Nitsche, Yvonne Pfeifer, Guido Werner, Werner Wunderle, Edward Velasco, Muna Abu Sin, Tim Eckmanns, Ulrich Nübel
BMJ Open. 2015; 5(5): e007397. Published online 2015 May 11. doi: 10.1136/bmjopen-2014-007397
PMCID:
PMC4431171
Matthew J. Ellington, Sandra Reuter, Simon R. Harris, Matthew T.G. Holden, Edward J. Cartwright, Daniel Greaves, Sarah M. Gerver, Russell Hope, Nicholas M. Brown, M. Estee Török, Julian Parkhill, Claudio U. Köser, Sharon J. Peacock
Int J Antimicrob Agents. 2015 May; 45(5): 477–484. doi: 10.1016/j.ijantimicag.2015.01.009
PMCID:
PMC4415905
Li-Yang Hsu, Simon R Harris, Monika A Chlebowicz, Jodi A Lindsay, Tse-Hsien Koh, Prabha Krishnan, Thean-Yen Tan, Pei-Yun Hon, Warren B Grubb, Stephen D Bentley, Julian Parkhill, Sharon J Peacock, Matthew TG Holden
Genome Biol. 2015; 16(1): 81. Published online 2015 April 23. doi: 10.1186/s13059-015-0643-z
PMCID:
PMC4407387
Whole-Genome Sequencing in Outbreak Analysis
Carol A. Gilchrist, Stephen D. Turner, Margaret F. Riley, William A. Petri, Jr., Erik L. Hewlett
Clin Microbiol Rev. 2015 July; 28(3): 541–563. Published online 2015 April 15. doi: 10.1128/CMR.00075-13
PMCID:
PMC4399107
Phosphorylation Events in the Multiple Gene Regulator of Group A Streptococcus Significantly Influence Global Gene Expression and Virulence
Misu Sanson, Nishanth Makthal, Maire Gavagan, Concepcion Cantu, Randall J. Olsen, James M. Musser, Muthiah Kumaraswami
Infect Immun. 2015 June; 83(6): 2382–2395. Published online 2015 March 30. doi: 10.1128/IAI.03023-14
PMCID:
PMC4432744
Gavin K. Paterson, Ewan M. Harrison, Gemma G. R. Murray, John J. Welch, James H. Warland, Matthew T. G. Holden, Fiona J. E. Morgan, Xiaoliang Ba, Gerrit Koop, Simon R. Harris, Duncan J. Maskell, Sharon J. Peacock, Michael E. Herrtage, Julian Parkhill, Mark A. Holmes
Nat Commun. 2015 March 27; 6: 6560. Published online 2015 March 27. doi: 10.1038/ncomms7560
PMCID:
PMC4389252
Thomas Obadia, Romain Silhol, Lulla Opatowski, Laura Temime, Judith Legrand, Anne C. M. Thiébaut, Jean-Louis Herrmann, Éric Fleury, Didier Guillemot, Pierre-Yves Boëlle, on behalf of the I-Bird Study Group
PLoS Comput Biol. 2015 March; 11(3): e1004170. Published online 2015 March 19. doi: 10.1371/journal.pcbi.1004170
PMCID:
PMC4366219
Tali Raveh-Sadka, Brian C Thomas, Andrea Singh, Brian Firek, Brandon Brooks, Cindy J Castelle, Itai Sharon, Robyn Baker, Misty Good, Michael J Morowitz, Jillian F Banfield
eLife. 2015; 4: e05477. Published online 2015 March 3. doi: 10.7554/eLife.05477
Includes additional comments & authors
PMCID:
PMC4384745
Miriam Land, Loren Hauser, Se-Ran Jun, Intawat Nookaew, Michael R. Leuze, Tae-Hyuk Ahn, Tatiana Karpinets, Ole Lund, Guruprased Kora, Trudy Wassenaar, Suresh Poudel, David W. Ussery
Funct Integr Genomics. 2015; 15(2): 141–161. Published online 2015 February 27. doi: 10.1007/s10142-015-0433-4
PMCID:
PMC4361730
Laura I Rusu, Kelly L Wyres, Matthias Reumann, Carlos Queiroz, Alexe Bojovschi, Tom Conway, Saurabh Garg, David J Edwards, Geoff Hogg, Kathryn E Holt
Health Inf Sci Syst. 2015; 3(Suppl 1): S7. Published online 2015 February 24. doi: 10.1186/2047-2501-3-S1-S7
PMCID:
PMC4383055
Eduardo Castro-Nallar, Nur A. Hasan, Thomas A. Cebula, Rita R. Colwell, Richard A. Robison, W. Evan Johnson, Keith A. Crandall
PeerJ. 2015; 3: e761. Published online 2015 February 17. doi: 10.7717/peerj.761
PMCID:
PMC4338773
Integration of Whole-Genome Sequencing into Infection Control Practices: the Potential and the Hurdles
Elizabeth Robilotti, Mini Kamboj
J Clin Microbiol. 2015 April; 53(4): 1054–1055. Published online 2015 February 11. doi: 10.1128/JCM.00349-15
PMCID:
PMC4365213
Nana Ama Amissah, Corinna Glasner, Anthony Ablordey, Caitlin S. Tetteh, Nana Konama Kotey, Isaac Prah, Tjip S. van der Werf, John W. Rossen, Jan Maarten van Dijl, Ymkje Stienstra
PLoS Negl Trop Dis. 2015 February; 9(2): e0003421. Published online 2015 February 6. doi: 10.1371/journal.pntd.0003421
PMCID:
PMC4319846
A Naturally Occurring Single Amino Acid Replacement in Multiple Gene Regulator of Group A Streptococcus Significantly Increases Virulence
Misu Sanson, Brian E. O'Neill, Priyanka Kachroo, Jeff R. Anderson, Anthony R. Flores, Chandni Valson, Concepcion C. Cantu, Nishanth Makthal, Christof Karmonik, Nahuel Fittipaldi, Muthiah Kumaraswami, James M. Musser, Randall J. Olsen
Am J Pathol. 2015 February; 185(2): 462–471. doi: 10.1016/j.ajpath.2014.10.018
PMCID:
PMC4305177
Susanna K.P. Lau, Alan K.L. Wu, Jade L.L. Teng, Herman Tse, Shirly O.T. Curreem, Stephen K.W. Tsui, Yi Huang, Jonathan H.K. Chen, Rodney A. Lee, Kwok-Yung Yuen, Patrick C.Y. Woo
Emerg Infect Dis. 2015 February; 21(2): 232–241. doi: 10.3201/eid2102.140623
PMCID:
PMC4313635
Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak
Sophie Octavia, Qinning Wang, Mark M. Tanaka, Sandeep Kaur, Vitali Sintchenko, Ruiting Lan
J Clin Microbiol. 2015 April; 53(4): 1063–1071. Published online 2015 January 21. doi: 10.1128/JCM.03235-14
PMCID:
PMC4365247
Amy J. Mathers, Nicole Stoesser, Anna E. Sheppard, Louise Pankhurst, Adam Giess, Anthony J. Yeh, Xavier Didelot, Stephen D. Turner, Robert Sebra, Andrew Kasarskis, Tim Peto, Derrick Crook, Costi D. Sifri
Antimicrob Agents Chemother. 2015 March; 59(3): 1656–1663. Published online 2015 January 5. doi: 10.1128/AAC.04292-14
PMCID:
PMC4325807
Steven Y.C. Tong, Matthew T.G. Holden, Emma K. Nickerson, Ben S. Cooper, Claudio U. Köser, Anne Cori, Thibaut Jombart, Simon Cauchemez, Christophe Fraser, Vanaporn Wuthiekanun, Janjira Thaipadungpanit, Maliwan Hongsuwan, Nicholas P. Day, Direk Limmathurotsakul, Julian Parkhill, Sharon J. Peacock
Genome Res. 2015 January; 25(1): 111–118. doi: 10.1101/gr.174730.114
PMCID:
PMC4317166
Stephen J. Salipante, David J. Roach, Jacob O. Kitzman, Matthew W. Snyder, Bethany Stackhouse, Susan M. Butler-Wu, Choli Lee, Brad T. Cookson, Jay Shendure
Genome Res. 2015 January; 25(1): 119–128. doi: 10.1101/gr.180190.114
PMCID:
PMC4317167
‘Someday it will be the norm’: physician perspectives on the utility of genome sequencing for patient care in the MedSeq Project
Jason L Vassy, Kurt D Christensen, Melody J Slashinski, Denise M Lautenbach, Sridharan Raghavan, Jill Oliver Robinson, Jennifer Blumenthal-Barby, Lindsay Zausmer Feuerman, Lisa Soleymani Lehmann, Michael F Murray, Robert C Green, Amy L McGuire
Per Med.
Published in final edited form as: Per Med. 2015; 12(1): 23–32. doi: 10.2217/PME.14.68
PMCID:
PMC4306284
Current and Emerging Legionella Diagnostics for Laboratory and Outbreak Investigations
Jeffrey W. Mercante, Jonas M. Winchell
Clin Microbiol Rev. 2015 January; 28(1): 95–133. doi: 10.1128/CMR.00029-14
PMCID:
PMC4284297
Mark de Been, Val F. Lanza, María de Toro, Jelle Scharringa, Wietske Dohmen, Yu Du, Juan Hu, Ying Lei, Ning Li, Ave Tooming-Klunderud, Dick J. J. Heederik, Ad C. Fluit, Marc J. M. Bonten, Rob J. L. Willems, Fernando de la Cruz, Willem van Schaik
PLoS Genet. 2014 December; 10(12): e1004776. Published online 2014 December 18. doi: 10.1371/journal.pgen.1004776
PMCID:
PMC4270446
Yanjiao Zhou, Carey-Ann D. Burnham, Tiffany Hink, Lei Chen, Nurmohammad Shaikh, Aye Wollam, Erica Sodergren, George M. Weinstock, Phillip I. Tarr, Erik R. Dubberke
J Clin Microbiol. 2014 December; 52(12): 4260–4266. doi: 10.1128/JCM.02115-14
PMCID:
PMC4313296
Pierre-Edouard Fournier, Gregory Dubourg, Didier Raoult
Genome Med. 2014; 6(11): 114. Published online 2014 November 29. doi: 10.1186/s13073-014-0114-2
PMCID:
PMC4295418
Timothy D Read, Ruth C Massey
Genome Med. 2014; 6(11): 109. Published online 2014 November 22. doi: 10.1186/s13073-014-0109-z
PMCID:
PMC4295408
Patrick Tang, Jennifer L Gardy
Genome Med. 2014; 6(11): 104. Published online 2014 November 20. doi: 10.1186/s13073-014-0104-4
PMCID:
PMC4295302
Mihail R Halachev, Jacqueline Z-M Chan, Chrystala I Constantinidou, Nicola Cumley, Craig Bradley, Matthew Smith-Banks, Beryl Oppenheim, Mark J Pallen
Genome Med. 2014; 6(11): 70. Published online 2014 November 20. doi: 10.1186/s13073-014-0070-x
PMCID:
PMC4237759
George M Weinstock, Sharon J Peacock
Genome Biol. 2014; 15(11): 528. Published online 2014 November 19. doi: 10.1186/s13059-014-0528-6
PMCID:
PMC4283783