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Transl Psychiatry. 2012 May; 2(5): e108.
Published online 2012 May 1. doi:  10.1038/tp.2012.33
PMCID: PMC3365252

Neurotrophic gene polymorphisms and response to psychological therapy


Therapygenetics, the study of genetic determinants of response to psychological therapies, is in its infancy. Here, we investigate whether single-nucleotide polymorphisms in nerve growth factor (NGF) (rs6330) and brain-derived neutrotrophic factor (BDNF) (rs6265) genes predict the response to cognitive behaviour therapy (CBT). Neurotrophic genes represent plausible candidate genes: they are implicated in synaptic plasticity, response to stress, and are widely expressed in brain areas involved in mood and cognition. Allelic variation at both loci has shown associations with anxiety-related phenotypes. A sample of 374 anxiety-disordered children with white European ancestry was recruited from clinics in Reading, UK, and in Sydney, Australia. Participants received manualised CBT treatment and DNA was collected from buccal cells using cheek swabs. Treatment response was assessed at post-treatment and follow-up time points. We report first evidence that children with one or more copies of the T allele of NGF rs6330 were significantly more likely to be free of their primary anxiety diagnosis at follow-up (OR=0.60 (0.42–0.85), P=0.005). These effects remained even when other clinically relevant covariates were accounted for (OR=0.62 (0.41–0.92), P=0.019). No significant associations were observed between BDNF rs6265 and response to psychological therapy. These findings demonstrate that knowledge of genetic markers has the potential to inform clinical treatment decisions for psychotherapeutic interventions.

Keywords: anxiety, CBT, children, genetics, therapeutics, treatment response


Anxiety disorders frequently onset in childhood1 are highly prevalent2 and often persist into adolescence and adulthood.3 They are associated with a wide range of impairments4, 5, 6 and are a major risk factor for future psychological7 and physical health problems.8 Given the considerable suffering, dysfunction and poor prognosis associated with child anxiety, ensuring that treatments are maximally efficacious is of critical importance.

Remission rates in the most established first-line treatment for child anxiety, cognitive behavior therapy (CBT), are approximately 55% immediately post treatment, rising to around 65% by 6–12-month follow-up.9 This means that 35–45% of children retain significant impairments following treatment. Only limited work has investigated the predictors of children's treatment response to CBT, despite the potential of such an approach to guide treatment and improve outcome. The most convincing predictors are increased symptom severity,10 parental psychopathology11, 12 and comorbid mood disorders.13

While the field of pharmacogenetics is well established,14 therapygenetics, the study of genetic markers that predict response to psychological therapy, is a novel research area. In the most comprehensive study to date,15 we showed that anxiety-disordered children (N=270) with the 5-HTTLPR SS genotype were 20% more likely to be free of their primary anxiety diagnosis following CBT than those with SL/LL genotypes. 5-HTTLPR SS genotype predicted better treatment response even after controlling for other significant clinical covariates. However, this effect was seen only at follow-up (assessed at 3, 6 or 12 months) and not immediately post treatment. Similarly, the SS genotype (and S/Lg and Lg/Lg) predicted increased sensitivity to an experimental attention bias modification intervention designed to manipulate attentional biases either toward threat or toward positive stimuli.16 However, another study with adult bulimia patients found that the 5-HTTLPR S allele predicted a poorer treatment response, irrespective of whether it was CBT, medication or combined therapy.17 The contradictory results between Eley et al.15 and Steiger et al.17 most likely reflect small samples, varying phenotypes and the use of medication. Finally, an association was observed between COMT val158met and CBT response in adult panic disorder;18 however, many patients also received medication. A recent review argues strongly for incorporating genetic variation into psychological treatment research given its potential to shed light on psychopathology, enhance the ability to tailor personalised treatments on the basis of genetic profile and improve treatment efficacy.19

Building on the very modest therapygenetics literature so far, this study examines associations between polymorphisms in nerve growth factor (NGF rs6330, also referred to as 104C>T) and brain-derived neutrotrophic factor (BDNF rs6265, also referred to as Val66Met) and response to CBT in a sample of anxiety-disordered children. In brief, both NGF and BDNF are neurotrophic genes that regulate growth factors involved in the development, differentiation and survival of neurons. Neurotrophic markers are plausible candidates for involvement in response to psychological therapy. They have a key role in synaptic plasticity and long-term potentiation, are implicated in the orchestration of HPA axis response to stress and are widely expressed in limbic areas of the central nervous system (for example, hippocampus, insula, anterior cingulate cortex) involved in mood and cognition.20 Reduced neurotrophic signalling and neurotrophin-mediated neuronal plasticity may be implicated in the pathophysiology of a range of psychiatric disorders and their therapy.21, 22, 23

A non-synonymous single-nucleotide polymorphism in the NGF gene, rs6330, produces an alanine to valine substitution at amino acid position 35, and is thought to affect intracellular processing and secretion of NGF.24 Studies in rodent and non-human primates have shown that NGF (and BDNF) levels are sensitive to environmental influences, such as maternal separation, deprivation and changes to the rearing environment.25, 26, 27 NGF blood levels also increase in response to anxiety and acute arousal states in humans.28, 29 NGF serum levels also rise in response to positive environments, namely, after successful but not unsuccessful CBT treatment for generalised anxiety disorder.30 Allelic variations at the rs6330 locus have previously shown associations with anxiety-related traits and affective disorders. NGF genotype interacted with gender to predict trait-anxiety scores, with higher anxiety seen in females with the CC genotype compared with CT and TT genotype carriers, but with the opposite effect observed in males.31 In contrast, the T allele of rs6330 has been associated with affective disorders in females.32

BDNF secretion is activity dependent, with decreases associated with stress and mood disorders, whereas antidepressant treatment increases BDNF secretion.22, 33, 34, 35 In the functional rs6265 (Val66Met) polymorphism, the more common G allele encodes for valine (Val), whereas the A allele encodes for methionine (Met). The Met allele is associated with diminished activity-dependent secretion of BDNF,36, 37 structural brain abnormalities in limbic regions of the central nervous system,38, 39, 40 impaired hippocampal activity,41 impaired associative fear learning,42 and, in knock-in mice, defective BDNF secretion and increased anxiety-related behaviour.37

Association studies in humans have yielded heterogenous findings with regard to determining the risk allele for anxiety-related traits. Some studies have reported an association between the Val66 allele and higher neuroticism scores;43, 44 a meta-analysis concluded that the Met variant, despite its unfavourable biological effects, was associated with lower neuroticism.45 Others have reported no significant association between either allele and neuroticism scores.46, 47, 48 However, others report significant associations between Met carriers and increased introversion,49 harm avoidance50 and significant gene–gene (for example, with 5-HTTLPR) and gene–environment interactions for anxiety and depression-related (endo)phenotypes.49, 51, 52, 53, 54 A better antidepressant treatment response is also observed for the Met variant.55

To date, no studies have investigated whether neurotrophic gene polymorphisms predict response to purely psychological therapy, despite NGF and BDNF being associated with anxiety responses in humans and neural plasticity and BDNF appearing to mediate antidepressant treatment response. Furthermore, given our recent finding that 5-HTTLPR genotype predicts treatment response to CBT, evidence of genetic epistasis between 5-HTTLPR and neurotrophic markers (particularly BDNF Val66Met) and a role for BDNF in mediating serotonergic antidepressant response, it is also of interest to explore whether neurotrophic gene polymorphisms interact with 5-HTTLPR to predict treatment response. Here, we test these novel hypotheses in a sample of anxiety-disordered children aged 6–13 years receiving CBT.

Materials and methods


Six hundred and thirteen children aged 6–13 years and meeting the DSM-IV56 criteria for a primary anxiety-disorder diagnosis were recruited (participation rate=73%). Exclusion criteria were significant physical/intellectual impairment and psychoses. Genotyping data were available for 593 children for NGF rs6330 and 604 children for BDNF rs6265. Parental DNA was obtained from 525 mothers and 457 fathers for rs6330, and from 583 mothers and 458 fathers for rs6265, with 414 and 424 complete trios for rs6330 and rs6265, respectively.

Recruitment was done at two clinical sites: Sydney, Australia and Reading, UK. The Australian sample was recruited from referrals to randomised CBT-based treatment trials undertaken by the Centre for Emotional Health at Macquarie University (N=429). The UK sample was recruited from two CBT-based clinical trials at the Berkshire Child Anxiety Clinic, University of Reading (N=156) and a feasibility study of CBT-based guided self-help within the Oxfordshire Primary Child and Adolescent Mental Health Service (N=24). Treatment was based on the Cool Kids Program.57

Children's ethnicity was assessed using the ancestry of their grandparents. Those with four grandparents of white European ancestry were included in the ‘white' subgroup (N=374) and data from this subset are analysed here. Sample descriptives for this sample are reported in Table 1. This sample overlaps to a significant extent with the sample reported in our earlier paper on the associations between treatment response and the 5-HTTLPR.15 Fifteen extra cases are included in this paper for whom genotype data were available for rs6330 and/or rs6265 but who were not included in our earlier paper because of not having 5-HTTLPR genotype data. The numbers of subjects from other ethnic subgroups were too small for a separate analysis (African or Caribbean, N=2; Asian, N=14; Arab and Middle Eastern, N=9; Mixed, N=41; ancestry unknown and missing data, N=173).

Table 1
Sample characteristics for the white subset and by treatment site

Controls consisted of 459 white Europeans (61% female, mean age±s.d., 31.95±12.62) recruited for the Bipolar Affected Case–Control study.58 Participants were excluded if they, or a first-degree relative, ever fulfilled the criteria or received treatment for any psychiatric disorder.


Child diagnoses were made using the Anxiety Disorders Interview Schedule for DSM-IV, Parent and Child Versions (ADIS-IV-C/P59), and based on composite parent/child report and clinician severity rating (CSR; 0–8). Diagnostic criteria were applied by graduate or clinical psychologists, with diagnosis assigned when the child met the diagnostic criteria and received a CSR of 4 or more. Inter-rater reliability across diagnostic subtypes was excellent at both sites (>0.80 for anxiety disorders, >0.65 for mood disorders).60, 61 The percentages of children with specific disorders as their (a) primary diagnosis or (b) anywhere in their profile were as follows: separation anxiety disorder (18.7%, 48.5%); social phobia (20.9%, 62.5%); generalised anxiety disorder (44.7%, 79.9%); specific phobia (9.4%, 56.7%); panic/agoraphobia (0.8%, 3.0%); obsessive compulsive disorder (3.5%, 10.5%); post-traumatic stress disorder (0.3%, 0.8%) and anxiety disorders not otherwise specified (1.9%, 2.1%). Mood disorders were present in 10.2% of the children (depression: 3.5% dysthymia: 6.7%), with attention deficit hyperactivity disorder present in 11.5% and oppositional defiant disorders in 12.1% of the children.

Maternal and paternal depression, anxiety and stress over the past week at the pretreatment time point were assessed using the self-report Depression, Anxiety and Stress Scale (DASS-21) (ref. 62). Three subscales consisting of 7 items each were calculated: stress, anxiety and depression, with scores for each subscale ranging from a possible 0 to 42 (subscale totals are multiplied by 2). Internal consistency for each scale was 0.85, 0.77 and 0.89, respectively. For the purpose of the analyses reported here, a single mean score across the three subscales was computed.


Genomic DNA was extracted from buccal swabs (for cases) and blood samples (for controls) using established procedures.63, 64 Genotyping was performed using the Sequenom MassARRAY iPLEX Gold technology (Sequenom, San Diego, CA, USA). Primers for PCR amplification and extension probes were purchased from Metabion (Martinsried, Germany). PCR and extension reactions were performed according to the iPLEX Gold protocol, with 10 ng of genomic template per sample. Extension products were analysed on a compact MALDI-TOF Mass Spectrometer (Sequenom). Genotypes were assigned automatically using the MassARRAY SpectroTyper 4.0 software (Sequenom) and then individually inspected in order to remove erroneous calls. Quality control measures included eight negative controls per 384-well plate and 4% of samples genotyped in duplicate to confirm inter-plate reproducibility. The genotyping success rate was 98.1% for rs6330 and 99% for rs6265. Genotype distribution conformed to the Hardy–Weinberg equilibrium for rs6330 (χ21=0.56, P=0.453) and rs6265 21=0.05, P=0.823).


Ethical approval was granted at each site by Human Ethics and Biosafety Committees (National Research Ethics Service: Berkshire Research Ethics Committee and Macquarie University Ethics Review Committee (Human Research)). Informed consent was sought from parents and verbal assent from children. Buccal swabs were collected either at the clinic or through the post. Diagnostic data were available before and after treatment (N=336 children; 89.8%) and at one follow-up point (N=278; 74.3%). The timing of the follow-up differed across trials (3, 6 and 12 months) and for these the N (percentage) values were as follows: 41 (11.0%), 217 (58.0%) and 20 (5.3%) available at the 3-, 6- and 12-month follow-up points, respectively Those without follow-up data differed from those with follow-up data by being significantly more likely to have a comorbid mood disorder (χ21=10.44, P=0.001, 18.8% vs 7.2%), being significantly older (t(372)=2.94, P=0.003, 9.93 vs 9.30 years) and having a less severe primary anxiety disorder before treatment (t(372)=−2.41, P=0.016, 5.96 vs 6.23).

Statistical analyses

The primary outcome was treatment response for primary anxiety diagnosis at follow-up using an additive genotype model. We note whether any effects survive multiple testing correction using a Bonferroni adjusted P value of 0.017 correcting for the analysis of three independent markers, investigated in this and our previous paper.15 Only when the additive model retained significance after applying multiple testing corrections do we report recessive and dominant genetic models. No further correction is applied, because these are not independent tests. We also report treatment response data at post treatment and for all anxiety diagnoses, for subsets of the data (for example, only those with follow-up data at 6 months) and interactions with 5-HTTLPR. We do not apply further multiple testing corrections, because these are supplementary analyses that test the same core hypothesis and are not fully independent tests. Finally, we present secondary analyses investigating case–control and family-based associations. We do not apply multiple testing corrections for these secondary analyses. Stringently correcting for all primary and secondary analyses presented on the three markers described here and in our previous paper with the 5-HTTLPR would require a Bonferroni adjusted P value of 0.002. None of the analyses reported here would survive this correction. However, we consider this to be very conservative given that the vast majority of analyses performed for each marker do not represent independent tests.


Treatment response analyses

Treatment response was classified as (1) primary anxiety response: the absence of the primary anxiety disorder and (2) all anxiety response: the absence of any anxiety diagnosis. Treatment response was assessed immediately post treatment and at follow-up (collapsed across the time point, although usually 6 months after the end of treatment, with a proportion assessed at 3 and 12 months post treatment). We used logistic regression analyses with robust standard errors and maximum likelihood estimation to test for differences in treatment response using the additive genetic model. No significant effects of genotype were observed immediately post treatment for either polymorphism (see Table 2).

Table 2
Genotypic frequencies and logistic regression analyses for NGF rs6330 and BDNF rs6265 by treatment response (additive model coded as: −1, 0, 1)

For NGF genotypes, a significant difference in treatment response was observed for primary anxiety response at follow-up (Table 2). This effect was significant for the additive model and supported by inspection of frequency data, with each extra T allele conferring a more positive treatment response (OR=0.60 (95% CI: 0.42–0.85), P=0.005), with this effect surviving multiple testing corrections. As shown in Figure 1, 53.2% of those with the CC genotype were free of their primary anxiety diagnosis and 63.5% of those with the CT genotype showed a positive treatment response, while 76.7% of those with the TT genotype were free of their primary anxiety diagnosis at follow-up. As the additive model survived multiple testing corrections, analyses were performed for recessive and dominant genetic models. A significant effect of NGF genotype was also observed in both models (recessive: OR=0.45 (0.23–0.87), P=0.018; dominant: OR=0.55 (0.32–0.93), P=0.026). For all anxiety response, the additive model indicated a non-significant statistical trend (OR=0.73 (0.52–1.02), P=0.067), with the percentage of treatment responders for each genotype as follows: CC: 40.5% CT: 45.3% TT: 56.7% (see Figure 1). No significant effects of the BDNF polymorphism on treatment response were observed (see Table 2).

Figure 1
Percentage of children free of primary anxiety disorder and all anxiety disorders at follow-up by nerve growth factor rs6330 genotype (error bars±1 s.e.).

Next we determined whether the significant effect of NGF genotype remained even after controlling for other possible covariates. As a first stage, genotype (CC coded as −1, CT coded as 0, TT coded as 1), time (linear and quadratic terms to account for the use of three different follow-up time points), age, gender and treatment site (Sydney or Reading) were entered into the model. For primary anxiety response only NGF genotype was a significant predictor (OR 0.58 (0.40–0.84), P=0.004, see Table 3, model 1), indicating that with each additional T allele children were significantly less likely to have their primary anxiety disorder at follow-up. This effect survived multiple testing corrections. This pattern of findings was also similar when analyses were performed on (a) the entire sample (that is, white subset+other ethnicities) (OR=0.72 (0.54–0.96), P=0.024); (b) those with 6-month follow-up only (OR=0.64 (0.42–0.97), P=0.037) and (c) those who received an eight session in-person CBT programme (OR=0.61 (0.41–0.92), P=0.018). In a subsequent model (Table 3, model 2), we included other variables that were significant predictors of treatment response (comorbid mood disorders, pretreatment symptom severity and maternal psychopathology were significant predictors, paternal psychopathology was not a significant predictor) in their own right. Importantly, NGF genotype remained a significant predictor of treatment response for primary anxiety response when controlling for these other factors (OR =0.62 (0.41–0.92), P=0.019); see Table 3. However, this effect marginally exceeded the Bonferroni-corrected P-value. For the more stringent test of all anxiety response, the effect size was similar but non-significant (OR=0.71 (0.50–1.00), P=0.051, see Table 3).

Table 3
Predicting response to CBT in anxious children: presence of primary anxiety disorder and all anxiety disorders at follow-up (NGF rs6330 coded as CC=−1; CT=0, TT=1)

Interaction with 5-HTTLPR

Using multiple logistic regression analyses with robust standard errors and maximum likelihood estimation, we investigated the interaction between (i) BDNF genotype (AA/AG coded as 1, GG coded as 0 as the dominant model was most strongly indicated by frequency data) and 5-HTTLPR genotype (SS coded as 1, SL/LL coded as 0) and (ii) NGF genotype (CC coded as −1, CT coded as 0, TT coded as 1) and 5-HTTLPR genotype as predictors of primary anxiety response at follow-up. The basic model included genotypes, time (linear and quadratic terms), age, gender and treatment site (see Table 4, model 1).

Table 4
Interaction between NGF rs6330 and 5-HTTLPR in predicting primary anxiety disorder response (NGF rs6330 coded as CC=−1; CT=0, TT=1; 5-HTTLPR coded as LL/LS=0; SS=1)

For rs6265 there was no significant main effect (OR=0.99 (0.56–1.78), P=0.983) or interaction with 5-HTTLPR (OR=2.43 (0.48–12.33), P=0.285). The inclusion of rs6265 in the model did not diminish the predictive power of 5-HTTLPR (OR=0.31 (0.12–0.75), P=0.010), with this effect surviving multiple testing corrections.

As main effects (that is, no interaction term in the model), both NGF genotype and 5-HTTLPR significantly predicted treatment response (NGF: OR=0.58 (0.40–0.84), P=0.004; 5-HTTLPR: OR=0.38 (0.18–0.80), P=0.011, see Table 4, model 1), with both effects surviving multiple testing corrections. Adding an interaction term did not reduce the predictive power of either NGF (OR=0.57 (0.38–0.85), P=0.006) or 5-HTTLPR (OR=0.39 (0.18–0.85), P=0.017, see Table 4, model 2). The interaction term was non-significant (OR=1.12 (0.40–3.12), P=0.823) and was therefore omitted from model 3. In model 3, the significant effect of both markers was retained even after controlling for other significant clinical covariates (NGF: OR=0.59 (0.39–0.89), P=0.013; 5-HTTLPR: OR=0.36 (0.16–0.82), P=0.015).

Case–control and family-based analyses

Genotypic frequencies were compared between cases (N=374) and never-psychiatrically-ill controls (N=459). There were no significant differences using the additive model and no other genetic models were indicated for either rs6265 ((GG, GA, AA); cases: 67.5%, 29.5%, 3.0% and controls: 64.3%, 32.7%, 3.1%, P=0.388) or rs6330 ((CC, CT, TT); cases: 29.5%, 47.8%, 22.7% and controls: 30.3%, 50.8% 19.0%, P=0.363). Within-family analyses using transmission-disequilibrium tests (TDT) on the trios from the case sample only (child, mother and father; N=273 (rs6330) and N=278 (rs6265)) were also non-significant (rs6330: χ22=0.09, P=0.763; rs6265: χ22=0.62, P=0.429).


Children with a primary anxiety disorder with one or more copies of the NGF rs6330 T allele were significantly more likely to be free of their primary anxiety diagnosis at follow-up. We observed an additive effect, with each extra T allele conferring a more positive treatment response: children with the TT genotype were 23.5% more likely to be free of their primary anxiety diagnosis at follow-up than those children with the CC genotype, whereas those with the CT genotype were 10.3% more likely to show remission compared with CC-genotype children. The association between genotype and treatment response remained significant even when other clinically relevant covariates were included in the model. No significant association between BDNF rs6265 genotype and response to psychological therapy was observed, in contrast to previous work reporting associations with antidepressant treatment response.55 Both NGF and 5-HTTLPR were independent predictors of anxious children's response to psychological therapy. However, there was no evidence for an interaction between these markers, which is consistent with past work.65 There were no case–control or within-family transmission differences for either polymorphism. This is counter to previous work reporting associations between both BDNF and NGF polymorphisms and anxiety-related phenotypes.

The effects of NGF genotype on psychological treatment response were observed only at follow-up, with no significant effects evident immediately post treatment. This mirrors the pattern of findings we reported with 5-HTTLPR genotype.15 The period between post-treatment and follow-up is often characterised by continued improvement, as the child continues to apply the skills learnt during therapy; thus, it is possible that, as with the 5-HTTLPR SS genotype, having one or more NGF T alleles influences the capacity for continued benefit from the intervention. Further studies are necessary to determine the precise functionality of this single nucleotide polymorphism (or linked SNPs) and the mechanism by which it may affect response to CBT. This is particularly pertinent given the heterogeneity in the existing literature regarding which allele confers the risk for anxiety and depressive disorders.31, 32 However, NGF is a plausible candidate gene for involvement in psychological treatment response for anxiety. It is expressed in limbic areas important for mood and cognition and there is evidence of effects on synaptic plasticity and neurogenesis and regulation of endocrine responses to stress. In particular, NGF is known to act on neurite outgrowth, making it especially well placed to determine structural changes in neural circuitry. A rise in serum NGF is also an indicator of positive treatment response in generalised anxiety disorder patients following CBT.30 One possibility is that children with the T allele may show subtle differences in neurotrophic signalling that influence the extent to which environmental influences bring about neuroplastic modifications, which in turn modulate the mood.

Neuroplasticity represents a plausible biological mechanism through which psychological interventions may exert some of their therapeutic effects.66 CBT is a learning-based intervention in which patients actively recall, reappraise and reconstruct their experiences. The aim is to improve problem-solving capacities, modify self-representations and regulate distressing affective states. Significant learning experiences of the kind undertaken during CBT may very well be underpinned by neuroplastic modifications in brain activity and function.66 Neuroimaging studies of psychological interventions lend weight to this hypothesis.67 Several studies have shown that psychological interventions alter brain function (measured by brain blood flow and oxygen/glucose metabolism) in individuals with unipolar mood disorders68, 69 and a range of anxiety disorders (OCD,70, 71, 72 panic disorder,73 social anxiety disorder,74 specific phobia75, 76 and PTSD77), with these changes consistent with the reduction in symptoms observed following treatment. Preliminary evidence also suggests that CBT may stimulate structural brain alterations reflective of neuroplasticity. After 16 sessions of CBT, women with chronic fatigue syndrome showed small increases in grey matter of the lateral prefrontal cortex.78 However, the study of changes in brain structure and function across psychological interventions is relatively new and many findings require replication and methodological improvements before definitive conclusions can be made regarding the neural effects of these interventions.67 In particular, it remains to be determined whether CBT has a causal influence on brain structure and function.

The present findings may have important clinical implications. These and our previous data,15 if replicated, suggest that knowledge of genetic markers could be used to inform clinical treatment decisions for psychotherapeutic as well as pharmacological interventions. However, to do so, genetic markers will need to yield sufficiently large effects to make a clinically meaningful contribution to psychological treatment response prediction. Recent work has shown using simulation data that for a genetic marker with a minor allele frequency (MAF) of 30% (that approximates the MAF for rs6330), a per-allele difference of 2.4 points on the Hamilton Rating Scale for Depression would be required to explain 6.3% of the variance in outcome in an antidepressant trial.79 Only then would the genetic marker be considered a clinically meaningful predictor of treatment outcome. The simulations are also extended to categorical outcomes (for example, remission status) and suggest that pseudo r2 values can be approximately translated to the clinically meaningful effect size measure of number needed to assess (NNA). For the clinical significance criterion of 6.3%, this corresponds to a NNA of 3: meaning that for every three patients assessed for a genetic marker, one significantly more accurate prediction of outcome can be made. In the present data, a model containing only NGF rs6330 genotype yielded a pseudo r2 estimate of 0.023 and an area under the curve (AUC) of 0.5938. Converting AUC to NNA using the methods outlined79 (see also Kraemer and Kupfer80) produces an NNA of 5.33. This suggests that for every five patients assessed for rs6330, one significantly more accurate prediction of outcome could be made. However, our summary statistic of choice is the percentage difference in treatment response between genotype groups: compared with individuals with no copies of the T allele, 23.5% more children with the TT genotype had a positive treatment response. We consider this to be indicative of a clinically meaningful effect. However, we also concur with the views of others79 that clinically significant prediction by genetic markers is likely to be best achieved by combining multiple genetic markers (perhaps in combination with clinical predictors) into predictive indices or algorithms.

This study has several limitations worthy of consideration. First, there is no independent replication, so these results should be considered preliminary. Although the main findings were consistent in direction in both the white subset and the entire sample, giving us confidence in the veracity of the results, some of the findings reported do not survive multiple testing corrections. Following conservative correction for all primary and secondary analyses performed in this and our previous paper, none of the analyses reported survived multiple testing correction. In our lab, we are in the process of working towards obtaining a replication sample. We intend to explore a limited number of additional plausible candidate markers in this original data set. This manuscript outlines the analyses we have performed to date and we will continue to take this approach going forwards. Second, the sample size, although large for a child anxiety treatment trial, is relatively small for a genetic association study. This may have reduced power to detect significant effects in some of our analyses. Third, the functional relevance of the NGF SNP (rs6330) remains underspecified, particularly with regard to the mechanisms by which the T allele may confer a benefit in terms of treatment response. We also limited our investigations to just two SNPs, each previously associated with anxiety phenotypes. However, it remains plausible that other NGF and BDNF variants may contribute both to susceptibility to anxiety disorders and to psychological therapy response. Fourth, our main analyses were performed on a subset who self-reported having four white European ancestry grandparents. However, without the benefit of ancestrally informative markers, it is not possible to eliminate the potential risk of hidden population substructures.

In summary, allelic variation in NGF rs6330 significantly predicted response to CBT in children with a primary anxiety diagnosis. These findings show that interactions between genetic variation and environmental experiences (here, psychological therapy) can influence not only the development but also the remission of psychiatric outcomes. Genetic predictors of treatment response may prove to be particularly informative given that they can be measured with little error and remain stable over time. Knowing an anxious child's genetic makeup with regard to NGF rs6330 and 5-HTTLPR genotype has predictive power for treatment prognosis, above and beyond ‘traditional' clinical predictors such as disorder severity, comorbid mood disorders and parental psychopathology. This information could be beneficial in helping to decide whether a child is likely to benefit from standard CBT alone or whether an enhanced treatment is required in order to maximise the chance of them improving.


This study was supported by the Australian Research Council (DP0666048), Australian National Health and Medical Research Council (PG382008 and PG488505), UK Medical Research Council (MRC; GU601020, G0802326 and G0901874) and the UK National Institute for Health Research (PBPG019712042). Creswell is supported by MRC Fellowship G0601874. The Bipolar-Affected Case Control Study was supported by GlaxoSmithKline, Research and Development.


The authors declare no conflict of interest.


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