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Evolution of gene order conservation in prokaryotes
Javier Tamames
Genome Biol. 2001; 2(6): research0020.1–research0020.11. Published online 2001 June 1.
PMCID:
PMC33396
Abstract Full Text PDF–926K
 Is Cited by the Following 18 Articles in this Archive:
Algorithm for large-scale clustering across multiple genomes
Gangman Yi, Jaehee Jung
Bioinformation. 2011; 7(5): 251–256. Published online 2011 October 31.
PMCID:
PMC3218420
Abstract Full Text PDF–340K Supplementary Material
Improved Adsorption of an Enterococcus faecalis Bacteriophage ΦEF24C with a Spontaneous Point Mutation
Jumpei Uchiyama, Iyo Takemura, Miho Satoh, Shin-ichiro Kato, Takako Ujihara, Kazue Akechi, Shigenobu Matsuzaki, Masanori Daibata
PLoS One. 2011; 6(10): e26648. Published online 2011 October 25. doi: 10.1371/journal.pone.0026648
PMCID:
PMC3201976
Abstract Full Text PDF–1.4M Supplementary Material
Anchor-Based Whole Genome Phylogeny (ABWGP): A Tool for Inferring Evolutionary Relationship among Closely Related Microorganims
Anchal Vishnoi, Rahul Roy, Hanumanthappa K. Prasad, Alok Bhattacharya
PLoS One. 2010; 5(11): e14159. Published online 2010 November 30. doi: 10.1371/journal.pone.0014159
Correction in:
PLoS One. 2010; 5(12): 10.1371/annotation/a56d6c19-b938-4733-8333-79ff48202414.
PMCID:
PMC2994773
Abstract Full Text PDF–697K Supplementary Material Correction
The Complete Genome Sequence of the Pathogenic Intestinal Spirochete Brachyspira pilosicoli and Comparison with Other Brachyspira Genomes
Phatthanaphong Wanchanthuek, Matthew I. Bellgard, Tom La, Karon Ryan, Paula Moolhuijzen, Brett Chapman, Michael Black, David Schibeci, Adam Hunter, Roberto Barrero, Nyree D. Phillips, David J. Hampson
PLoS One. 2010; 5(7): e11455. Published online 2010 July 6. doi: 10.1371/journal.pone.0011455
PMCID:
PMC2897892
Abstract Full Text PDF–1.6M Supplementary Material
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0
Padmanabhan Mahadevan, Donald Seto
BMC Res Notes. 2010; 3: 41. Published online 2010 February 23. doi: 10.1186/1756-0500-3-41
PMCID:
PMC2844394
Abstract Full Text PDF–958K
Relationship between operon preference and functional properties of persistent genes in bacterial genomes
Marit S Bratlie, Jostein Johansen, Finn Drabløs
BMC Genomics. 2010; 11: 71. Published online 2010 January 28. doi: 10.1186/1471-2164-11-71
PMCID:
PMC2837039
Abstract Full Text PDF–4.3M Supplementary Material
Conserved Symbiotic Plasmid DNA Sequences in the Multireplicon Pangenomic Structure of Rhizobium etli
Víctor González, José L. Acosta, Rosa I. Santamaría, Patricia Bustos, José L. Fernández, Ismael L. Hernández González, Rafael Díaz, Margarita Flores, Rafael Palacios, Jaime Mora, Guillermo Dávila
Appl Environ Microbiol. 2010 March; 76(5): 1604–1614. Published online 2010 January 4. doi: 10.1128/AEM.02039-09
PMCID:
PMC2832352
Abstract Full Text PDF–2.0M
Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?
Weilong Hao, G. Brian Golding
Genetics. 2009 August; 182(4): 1365–1375. doi: 10.1534/genetics.109.104216
PMCID:
PMC2728873
Abstract Full Text PDF–1.1M
Genome classification by gene distribution: An overlapping subspace clustering approach
Jason Li, Saman K Halgamuge, Sen-Lin Tang
BMC Evol Biol. 2008; 8: 116. Published online 2008 April 23. doi: 10.1186/1471-2148-8-116
PMCID:
PMC2383906
Abstract Full Text PDF–1.2M Supplementary Material
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Christine Fong, Laurence Rohmer, Matthew Radey, Michael Wasnick, Mitchell J Brittnacher
BMC Bioinformatics. 2008; 9: 170. Published online 2008 March 26. doi: 10.1186/1471-2105-9-170
PMCID:
PMC2358893
Abstract Full Text PDF–365K
Characterization and Evolution of Cell Division and Cell Wall Synthesis Genes in the Bacterial Phyla Verrucomicrobia, Lentisphaerae, Chlamydiae, and Planctomycetes and Phylogenetic Comparison with rRNA Genes
Martin Pilhofer, Kristina Rappl, Christina Eckl, Andreas Peter Bauer, Wolfgang Ludwig, Karl-Heinz Schleifer, Giulio Petroni
J Bacteriol. 2008 May; 190(9): 3192–3202. Published online 2008 February 29. doi: 10.1128/JB.01797-07
PMCID:
PMC2347405
Abstract Full Text PDF–773K Supplementary Material
Persistence drives gene clustering in bacterial genomes
Gang Fang, Eduardo PC Rocha, Antoine Danchin
BMC Genomics. 2008; 9: 4. Published online 2008 January 7. doi: 10.1186/1471-2164-9-4
PMCID:
PMC2234087
Abstract Full Text PDF–772K Supplementary Material
Patterns of Genome Evolution among the Microsporidian Parasites Encephalitozoon cuniculi, Antonospora locustae and Enterocytozoon bieneusi
Nicolas Corradi, Donna E. Akiyoshi, Hilary G. Morrison, Xiaochuan Feng, Louis M. Weiss, Saul Tzipori, Patrick J. Keeling
PLoS ONE. 2007; 2(12): e1277. Published online 2007 December 5. doi: 10.1371/journal.pone.0001277
PMCID:
PMC2099475
Abstract Full Text PDF–489K Supplementary Material
Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages
Jason Li, Saman K Halgamuge, Christopher I Kells, Sen-Lin Tang
BMC Bioinformatics. 2007; 8(Suppl 4): S6. Published online 2007 May 22. doi: 10.1186/1471-2105-8-S4-S6
PMCID:
PMC1892085
Abstract Full Text PDF–307K Supplementary Material
Positional Homology in Bacterial Genomes
Ingrid J. Burgetz, Salimah Shariff, Andy Pang, Elisabeth R. M. Tillier
Evol Bioinform Online. 2006; 2: 77–90. Published online 2007 January 14.
PMCID:
PMC2674667
Abstract Full Text PDF–460K
Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study
Mircea Podar, Jonathan R Eads, Toby H Richardson
BMC Evol Biol. 2005; 5: 42. Published online 2005 August 6. doi: 10.1186/1471-2148-5-42
PMCID:
PMC1199592
Abstract Full Text PDF–645K Supplementary Material
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli
Kyeong Soo Jeong, Jaeyong Ahn, Arkady B Khodursky
Genome Biol. 2004; 5(11): R86. Published online 2004 October 27. doi: 10.1186/gb-2004-5-11-r86
PMCID:
PMC545777
Abstract Full Text PDF–2.1M Supplementary Material
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 October; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
Abstract Full Text PDF–192K
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