My NCBISign In
Modeling biomedical experimental processes with OBI
Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N Soldatova, Christian J Stoeckert, Jr., Jessica A Turner, Jie Zheng, the OBI consortium
J Biomed Semantics. 2010; 1(Suppl 1): S7. Published online 2010 June 22. doi: 10.1186/2041-1480-1-S1-S7
PMCID:
PMC2903726
Abstract Full Text PDF–863K

Is Cited by the Following 16 Articles in this Archive:

Uberon, an integrative multi-species anatomy ontology
Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel
Genome Biol. 2012; 13(1): R5. Published online 2012 January 31. doi: 10.1186/gb-2012-13-1-r5
PMCID:
PMC3334586
Abstract Full Text PDF–1.1M Supplementary Material
A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi
Priti P. Parikh, Todd A. Minning, Vinh Nguyen, Sarasi Lalithsena, Amir H. Asiaee, Satya S. Sahoo, Prashant Doshi, Rick Tarleton, Amit P. Sheth
PLoS Negl Trop Dis. 2012 January; 6(1): e1458. Published online 2012 January 17. doi: 10.1371/journal.pntd.0001458
PMCID:
PMC3260319
Abstract Full Text PDF–1.0M
AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments
Jie Zheng, Julia Stoyanovich, Elisabetta Manduchi, Junmin Liu, Christian J. Stoeckert, Jr
Database (Oxford) 2011; 2011: bar045. Published online 2011 December 21. doi: 10.1093/database/bar045
PMCID:
PMC3244265
Abstract Full Text PDF–229K
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology
Yu Lin, Zuoshuang Xiang, Yongqun He
J Biomed Semantics. 2011; 2: 9. Published online 2011 October 31. doi: 10.1186/2041-1480-2-9
PMCID:
PMC3217896
Abstract Full Text PDF–2.4M Supplementary Material
The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web
Janna Hastings, Leonid Chepelev, Egon Willighagen, Nico Adams, Christoph Steinbeck, Michel Dumontier
PLoS One. 2011; 6(10): e25513. Published online 2011 October 3. doi: 10.1371/journal.pone.0025513
PMCID:
PMC3184996
Abstract Full Text PDF–853K
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory
Andrea Splendiani, Michaela Gündel, Jonathan M. Austyn, Duccio Cavalieri, Ciro Scognamiglio, Marco Brandizi
Brief Bioinform. 2011 November; 12(6): 562–575. Published online 2011 October 3. doi: 10.1093/bib/bbr051
PMCID:
PMC3220873
Abstract Full Text PDF–697K
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case
Thomas A Russ, Cartic Ramakrishnan, Eduard H Hovy, Mihail Bota, Gully APC Burns
BMC Bioinformatics. 2011; 12: 351. Published online 2011 August 22. doi: 10.1186/1471-2105-12-351
PMCID:
PMC3176268
Abstract Full Text PDF–1.0M Supplementary Material
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details
Nicole L. Washington, E. O. Stinson, Marc D. Perry, Peter Ruzanov, Sergio Contrino, Richard Smith, Zheng Zha, Rachel Lyne, Adrian Carr, Paul Lloyd, Ellen Kephart, Sheldon J. McKay, Gos Micklem, Lincoln D. Stein, Suzanna E. Lewis
Database (Oxford) 2011; 2011: bar023. Published online 2011 August 19. doi: 10.1093/database/bar023
PMCID:
PMC3170170
Abstract Full Text PDF–1.3M
Sharing and archiving nucleic acid structure mapping data
Philippe Rocca-Serra, Stanislav Bellaousov, Amanda Birmingham, Chunxia Chen, Pablo Cordero, Rhiju Das, Lauren Davis-Neulander, Caia D.S. Duncan, Matthew Halvorsen, Rob Knight, Neocles B. Leontis, David H. Mathews, Justin Ritz, Jesse Stombaugh, Kevin M. Weeks, Craig L. Zirbel, Alain Laederach
RNA. 2011 July; 17(7): 1204–1212. doi: 10.1261/rna.2753211
PMCID:
PMC3138558
Abstract Full Text PDF–484K
BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results
Ubbo Visser, Saminda Abeyruwan, Uma Vempati, Robin P Smith, Vance Lemmon, Stephan C Schürer
BMC Bioinformatics. 2011; 12: 257. Published online 2011 June 24. doi: 10.1186/1471-2105-12-257
PMCID:
PMC3149580
Abstract Full Text PDF–2.8M
How orthogonal are the OBO Foundry ontologies?
Amir Ghazvinian, Natalya F Noy, Mark A Musen
J Biomed Semantics. 2011; 2(Suppl 2): S2. Published online 2011 May 17. doi: 10.1186/2041-1480-2-S2-S2
PMCID:
PMC3102891
Abstract Full Text PDF–550K
Developing a kidney and urinary pathway knowledge base
Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens
J Biomed Semantics. 2011; 2(Suppl 2): S7. Published online 2011 May 17. doi: 10.1186/2041-1480-2-S2-S7
PMCID:
PMC3102896
Abstract Full Text PDF–718K
Representation of research hypotheses
Larisa N Soldatova, Andrey Rzhetsky
J Biomed Semantics. 2011; 2(Suppl 2): S9. Published online 2011 May 17. doi: 10.1186/2041-1480-2-S2-S9
PMCID:
PMC3102898
Abstract Full Text PDF–1.1M
On the formalization and reuse of scientific research
Ross D. King, Maria Liakata, Chuan Lu, Stephen G. Oliver, Larisa N. Soldatova
J R Soc Interface. 2011 October 7; 8(63): 1440–1448. Published online 2011 April 13. doi: 10.1098/rsif.2011.0029
PMCID:
PMC3163424
Abstract Full Text PDF–296K
Logical Development of the Cell Ontology
Terrence F Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G Cowell, Judith A Blake, Christopher J Mungall, Alexander D Diehl
BMC Bioinformatics. 2011; 12: 6. Published online 2011 January 5. doi: 10.1186/1471-2105-12-6
PMCID:
PMC3024222
Abstract Full Text PDF–5.3M
Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN
Yongqun He, Zuoshuang Xiang
Immunome Res. 2010; 6(Suppl 1): S5. Published online 2010 September 27. doi: 10.1186/1745-7580-6-S1-S5
PMCID:
PMC2946783
Abstract Full Text PDF–1.6M
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