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Logo of nihpaAbout Author manuscriptsSubmit a manuscriptNIH Public Access; Author Manuscript; Accepted for publication in peer reviewed journal;
J Neurosci. Author manuscript; available in PMC Aug 24, 2010.
Published in final edited form as:
PMCID: PMC2864043
NIHMSID: NIHMS181645

NAD+ depletion is necessary and sufficient for PARP-1 – mediated neuronal death

Abstract

Poly(ADP-ribose) polymerase-1 (PARP-1) is a key mediator of cell death in excitotoxicity, ischemia, and oxidative stress. PARP-1 activation leads to cytosolic NAD+ depletion and mitochondrial release of apoptosis-inducing factor (AIF), but the causal relationships between these two events has been difficult to resolve. Here we examined this issue by using extracellular NAD+ to restore neuronal NAD+ levels after PARP-1 activation. Exogenous NAD+ was found to enter neurons through P2X7-gated channels. Restoration of cytosolic NAD+ by this means prevented the glycolytic inhibition, mitochondrial failure, AIF translocation, and neuron death that otherwise results from extensive PARP-1 activation. Bypassing the glycolytic inhibition with the metabolic substrates pyruvate, acetoacetate, or hydroxybutyrate also prevented mitochondrial failure and neuron death. Conversely, depletion of cytosolic NAD+ with NAD+ glycohydrolase produced a block in glycolysis inhibition, mitochondrial depolarization, AIF translocation, and neuron death, independent of PARP-1 activation. These results establish NAD+ depletion as causal event in PARP-1 mediated cell death, and place NAD+ depletion and glycolytic failure upstream of mitochondrial AIF release.

Keywords: apoptosis inducing factor (AIF), glucose, ischemia, excitotoxicity, mitochondria, pyruvate

INTRODUCTION

The nuclear enzyme poly(ADP-ribose) polymerase-1 (PARP-1) is activated by DNA damage. PARP-1 cleaves the ADP-ribose moiety from NAD+ to generate poly(ADP-ribosyl)ation of specific nuclear acceptor proteins, including histones, DNA polymerases, and PARP-1 itself. This process is thought to facilitate DNA repair and prevent chromatid exchange (V. Schreiber et al., 2006); however, excessive PARP-1 activation can lead to cell death. PARP-1 has been shown to play a dominant role in neuronal death following excitotoxicity, ischemia-reperfusion, oxidative stress, and other conditions (M. J. Eliasson et al., 1997; L. Virag and C. Szabo, 2002). PARP family members other than PARP-1 may also be activated by DNA damage, but they do not significantly contribute to cell death in these settings (V. Schreiber et al., 2006).

How PARP-1 activation leads to neuronal death remains controversial. It was suggested more than 20 years ago that depletion of cytosolic NAD+ by PARP-1 causes cell death by energy failure (N. A. Berger, 1985). This energy failure could result from consumption of ATP for NAD+ re-synthesis (J. Zhang et al., 1994), or from impairment of the NAD+- dependent steps of glycolysis (W. Ying et al., 2003; W. X. Zong et al., 2004). More recently, translocation of apoptosis-inducing factor (AIF) from mitochondria to the nucleus was identified as a key step in the PARP-1 cell death process (S. W. Yu et al., 2002). AIF release can be triggered by the action of poly(ADP-ribose) (abbreviated as PAR) directly on mitochondria, suggesting that PARP-1 induced AIF release may be independent of NAD+ depletion (S. A. Andrabi et al., 2006; S. W. Yu et al., 2006). On the other hand, a causal link between NAD+ depletion and AIF release is suggested by studies showing that, in astrocytes, restoring NAD+ levels blocks PARP-1 induced mitochondrial depolarization, AIF release, and cell death (C. C. Alano et al., 2004). Thus the question remains as to whether NAD+ depletion is a causative event or merely an epiphenomenon in PARP-1 mediated neuronal death.

A definitive way to address this issue is to manipulate intracellular NAD+ concentrations after PARP-1 activation. The cytosolic and mitochondrial NAD+ pools each account for about 50% of total NAD+ in cultured neurons, but only the cytosolic pool is directly consumed by nuclear PARP-1 (C. C. Alano et al., 2007). Cytosolic NAD+ concentrations can be increased or maintained by the addition of exogenous NAD+ in the medium (C. C. Alano et al., 2004), and can be reduced by NAD+ glycohydrolase protein transfection. In this study we used these approaches to examine the role of NAD+ in PARP-1 mediated neuronal death induced by DNA alkylation, peroxynitrite, chemical ischemia, and NMDA excitotoxicity. Results of these studies indicate that cytosolic NAD+ depletion is both necessary for PARP-1 - mediated neuronal death, and sufficient, in the absence of PARP-1 activation, to induce glycolytic inhibition, mitochondrial depolarization, and AIF release.

MATERIALS AND METHODS

Materials

3,4-dihydro-5-[4-(1-piperidinyl)butoxy]-1(2H)-isoquinolinone (DPQ) and N-(6-Oxo-5,6-dihydrophenanthridin-2-yl)-(N,N-dimethylamino)acetamide hydrochloride (PJ34) were obtained from Calbiochem (Gibbstown, NJ). Tetramethylrhodamine, methyl ester (TMRM) and 3-morpholinosydnonimine (SIN1) were obtained through Invitrogen (Carlsbad, CA). All other reagents were purchased from Sigma-Aldrich (St. Louis, MO) except where otherwise noted. The studies were approved by the San Francisco Veterans Affairs Medical Center (SFVAMC) animal studies committee.

Cell cultures

Astrocyte monocultures were prepared from cerebral cortices of Wt or PARP-1−/− mice as previously described (C. C. Alano et al., 2004; C. C. Alano et al., 2007), and used when confluent, at 19–24 days in vitro. Cortical neuron monocultures were prepared from fetal (embryonic day 15) mice as previously described using wild-type and PARP-1−/− mice (C. C. Alano et al., 2004; C. C. Alano et al., 2007). Proliferation of non-neuronal cells was inhibited by the addition of 10 µM cytosine arabinoside 24 hours after plating. After 24 hours of cytosine arabinoside exposure, the plating medium was replaced with culture media consisting of: Neurobasal medium (Invitrogen) supplemented with B-27 Supplement and 0.2 mM Glutamax. The medium was subsequently exchanged 50% with fresh culture medium every 3–4 days. Experiments were conducted when the neurons were 10–14 days in vitro. Immunostaining of the neuron monocultures with the astrocyte marker glial fibrillary acidic protein (GFAP) revealed less than 3% of the cells to be contaminating astrocytes after 12 days in vitro. Mixed neuron-astrocyte cultures were prepared by plating cortical neurons onto a pre-existing confluent astrocyte layer. These cultures were subsequently maintained as described for the neuron monocultures. Mouse embryonic fibroblasts (MEFs) were prepared from 13.5-day-pregnant mice using a modified protocol (K. Nilausen and H. Green, 1965; V. Bryja et al., 2006). The cells were cultured in Dulbecco’s modified Eagle’s medium (Invitrogen) containing 10% FBS and 2mM glutamine. Cells were cultured in 12-well (seeding density 1.0×105 cells/well) or 24-well (seeding density 5.0×104 cells/well) tissue culture plates and used at 90% confluence. These cultures were used for experiments within three passages.

Experimental procedures

Experiments were initiated by placing the cultures in an artificial cerebral spinal fluid (aCSF) composed of (in mM): 3.1 KCl, 134 NaCl, 1.2 CaCl2, 1.2 MgSO4, 0.25 KH2PO4, 15.7 NaHCO3, and 2 glucose (C. C. Alano et al., 2006). The pH was adjusted to 7.2 while the solution was equilibrated with 5% CO2 at 37°C. Osmolarity was verified at 280–310 mOsm with a vapor pressure osmometer. Concentrated drug stocks were prepared in aCSF and likewise adjusted to pH 7.2 and 290–310 mOsm. Excitotoxicity was induced by incubating the neurons with NMDA (100 µM) in aCSF. Chemical ischemia (CI) was induced by incubating the cultures in glucose-free aCSF containing 0.5 mM 2-deoxyglucose and 5 mM sodium azide in a 37°C, 5% CO2 incubator (R. A. Swanson and J. H. Benington, 1996; P. Garnier et al., 2003). Drug exposures were terminated by washing with aCSF.

Neuronal death

Neuronal death was assessed by propidium iodide (P.I.) exclusion (C. C. Alano et al., 2006) or by calcein retention and propidium iodide exclusion as previously described (C. C. Alano et al., 2007). Live and dead neurons were counted, in a blinded fashion, in 4 – 6 randomly picked optical fields within each experimental well. At least 200 neurons were counted in each well. Each experimental group was repeated in duplicate or triplicate wells per plate and averaged to give an single value per experiment.

Radiolabeled NAD+ uptake assay

Pure neuronal cultures were washed twice with aCSF, and 0.01 µCi of 14C-labeled NAD+ (302 Ci / mol; Amersham, Piscataway, NJ) was added into each well. The NAD+ is 14C-labeled at the adenine moiety. The cells were incubated at 37 °C for 0 to 60 minutes, then washed twice in aCSF and lysed in 0.01 N NaOH / 0.1 % SDS. 14C was measured in the lysates by scintillation counting. To control for the possibility that 14C-labeled NAD+ binding to outer cell membranes could contribute to the NAD+ uptake measurements, control wells were exposed to 0.01 µCi of 14C-labeled NAD+ for only 30 seconds and otherwise treated identically.

Metabolite assays

Metabolite samples from neuron cultures were extracted in perchloric acid (0.5 N) and subsequently deproteinized and pH neutralized with potassium hydrogen phosphate. Dihydroacetone phosphate (DHAP), glyceraldehyde-3-phosphate (GAP), and fructose bisphosphate (FBP) were measured by enzyme-linked fluorometric methods (O. H. Lowry and J. V. Passonneau, 1972; G. Michal, 1988). DHAP was converted to glycerol-3-phosphate by glycerol-3-phosphate dehydrogenase, and the coupled oxidation of NADH to NAD+ was measured fluorometrically. GAP was subsequently converted to DHAP by triosephosphate isomerase (TIM), with the coupled oxidation of NADH to NAD+ measured fluorometrically. FBP was assayed by its conversion to DHAP + GAP by aldolase, and these metabolites measured as above. Pyruvate was assayed by its conversion to lactate by lactate dehydrogenase (LDH), and the coupled production of NADH was followed colorimetrically (W. Lamprecht and F. Heinz, 1988). Standards of known concentrations (0–500 µM) were run in the same plates. Proteins were determined by BCA method for standardization.

NAD+ and nicotinamide measurements

NAD+ was measured in neuronal monocultures and isolated mitochondria as previously described (C. C. Alano et al., 2006; C. C. Alano et al., 2007) using the recycling assay described by Szabo and colleagues (C. Szabo et al., 1996). Samples were extracted in perchloric acid. Nicotinamide was measured by high-performance liquid chromatography (HPLC) as described (H. A. Gillmor et al., 1999), with minor modifications. Samples were injected using a Waters 717 plus Autosampler. HPLC was performed with a multiwavelength detector (Waters, Corp., Millford, MA) using a Microsorb column (Type C18 4.6×100 mm column, particle size 3 µ, pore size 100 A; Rainin Instrument Company, Emeryville, CA) utilizing a Waters 600E Multisolvent Delivery System at a flow rate of 1 mL/min. Both the NAD+ and nicotinamide measurements were calibrated against internal standards added to lysates prior to the deproteination step, and normalized to protein content of the samples as determined by the bicinchoninic acid (BCA) method.

ATP and AMP measurements

ATP and AMP were assayed from perchloric acid extracts. Separations were performed on a Supelcosil LC-18 HPLC column (5 micron particle size; L × I.D. = 25 cm × 4.6 mm; Phenomenex), utilizing a Waters 600E Multisolvent Delivery System at a flow rate of 1 mL/min. ATP and AMP were detected by monitoring absorbance change at 254 nm using a Waters 2996 Photodiode Array Detector. The mobile phase and chromatographic conditions were as described (G. Crescentini and V. Stocchi, 1984), with minor modifications.

Mitochondrial isolation

Mitochondrial isolation from cultured mouse neurons was performed as described (C. C. Alano et al., 2007). Mitochondrial enrichment was quantified by Western blots using an antibody targeted to mitochondrial protein voltage-dependent anion channel (VDAC).

Glycolysis assay

Glucose utilization was measured as described (W. Ying et al., 2005), using a modification of the Sokoloff 2-deoxyglucose (2-DG) assay (L. Sokoloff et al., 1977). The medium was exchanged with aCSF containing 5 mM piperazine-1,4-bis(2-ethanesulphonic acid (PIPES) to maintain pH at 7.2 in a room air atmosphere. After a 30-min equilibration period, 2.5 µCi of [14C (U)]2-DG (340 Ci/mol; ARC, St. Louis, MO) was added to each culture well. Incubations were continued for 30 min at 37°C, then terminated by 3 washes in ice-cold aCSF. Cells were lysed in 0.01 N NaOH/0.5% SDS and the accumulated 14C was measured with a scintillation counter.

Western blots

Western blots were prepared as described (C. C. Alano et al., 2006; C. C. Alano et al., 2007). Cell extracts were mixed with a 1:4 volume of SDS–PAGE loading buffer (10% β-mercaptoethanol, 10% glycerol, 4% SDS, 0.01% bromophenol blue, and 62.5 mM Tris–HCl, pH 6.8) and heated to 65°C for 15 min. Samples were loaded on a 10% resolving SDS–polyacrylamide gel, and after electrophoresis were transferred to either PVDF membranes or to nitrocellulose membranes (for PAR). The membranes were placed in blocking buffer (50 mM Tris–HCl, pH 8.0, 150 mM NaCl, and 0.1% Tween-20) containing 5% blotting grade nonfat dry milk for 60 minutes. Incubations with primary antibodies overnight at 4°C: anti-AIF Ab (1:2500; Sigma), anti-PAR (1:1000; Trevigen), anti-β-actin (1:5000; Sigma), or anti-VDAC (1:2000; Sigma), and subsequently exposed to peroxidase-labeled anti-IgG for 60 min. Bound antibody was detected via chemiluminescence using ECL+ WB Detection kit (Amersham Pharmacia). Protein loading and transfer was evaluated by immunostaining for either anti-β-actin Ab (1:10,000) or anti-VDAC Ab (1:5000), and by Ponceau S staining (not shown). Densitometry analysis was quantified with ImageJ program (NIH). Values for each lane were normalized to protein loading. Immunoblots prepared in the absence of primary or secondary antibodies showed no signal (not shown).

Immunostaining

Cell fixation and immunostaining for AIF and PAR were performed as described (C. C. Alano et al., 2004; C. C. Alano et al., 2006), using anti-AIF polyclonal antibody (Sigma) at a 1:1500 dilution and anti-PAR polyclonal antibody (Trevigen, Gaithersburg, MD) at a 1:2000 dilution. Immunostaining was visualized with fluorescence-tagged (Alexa 488) secondary antibody at 1:2500 dilution (Molecular Probes, Eugene, OR). Nuclear counterstaining with propidium iodide was performed after removal of excess secondary antibody. Cell fluorescence was captured using a Zeiss LSM 510 META confocal laser scanning module mounted onto an inverted Axio Observer (Zeiss).

Mitochondrial membrane potential

Mitochondrial membrane potential was evaluated by tetramethyl rhodamine methyl ester (TMRM) under non-quench conditions, as described previously (C. C. Alano et al., 2004). Stock TMRM was prepared with dimethyl sulfoxide (DMSO) to a concentration of 100 µM, and this was diluted to 1–2 nM in recording buffer composed of (in mM): 3.1 KCl, 134 NaCl, 1.2 CaCl2, 1.2 MgSO4, 0.25 KH2PO4, 10 PIPES, 5.7 NaHCO3, 2 glucose, at pH 7.2. Fluorescence values were collected every minute as a field average for each excitation / emission pair, with 4 – 10 fields assessed per coverslip. These values were averaged for each “n” and normalized to the values obtained from control coverslips prepared in parallel. The non-quench loading condition (1–2 nM) was established by loading cultures with a range of TMRM concentrations and confirming a fluorescence decrease after incubation with 10 µM carbonyl cyanide p-(trifluoromethoxy) phenylhydrazone (FCCP), a mitochondrial uncoupler. In addition, FCCP was added at the end of each experimental recording to verify non-quench conditions (i.e. a decrease in TMRM fluorescence). Data were presented as fluorescence (F) over baseline fluorescence (Fo), or expressed as the percent of fluorescence decrease calculated between the maximal fluorescence (baseline) and the minimal fluorescence (FCCP).

NAD+ glycohydrolase transfection

NAD+ glycohydrolase from porcine brain (Sigma, St. Louis, MO) was diluted in serum-free aCSF to 1–500 µg/mL and mixed with BioPorter reagent (Gene Therapy Systems, San Diego, CA). Neuron cultures were incubated with the BioPORTER-protein complex for 3 – 4 hr at 37°C and immediately used for experiments. Cell transfection rate was estimated using parallel transfections with fluorescein-labeled IgG or β-galactosidase.

Statistical analyses

Data are presented as means ± SEM. Statistical significance was assessed using ANOVA and the Student-Newman-Keuls post hoc test to compare the indicated experimental groups. The “n” denotes the number of independent experiments, each performed with independently prepared cultures. Values from 3 – 4 culture wells were averaged to generate each data point within each experiment.

RESULTS

PARP-1 activation leads to NAD+ depletion and neuronal death

Experiments were performed with cortical neuron cultures in aCSF medium, which contains glucose as the only metabolic substrate. PARP-1 activation was induced with the alkylating agent N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) to induce DNA strand breaks (H. C. Ha and S. H. Snyder, 1999), or with the peroxynitrite generator 3-morpholinosydnonimine (SIN1) to mimic peroxynitrite production in ischemic brain (M. J. Eliasson et al., 1997; M. J. Eliasson et al., 1999; C. C. Alano et al., 2006). Neuronal death resulting from these treatments was blocked in PARP-1−/− neurons and by the PARP inhibitors PJ34 and DPQ (Supplemental Fig. 1A,B), as previously reported (C. Szabo and V. L. Dawson, 1998; S. W. Yu et al., 2002; C. C. Alano and R. A. Swanson, 2006; C. C. Alano et al., 2007; M. Haddad et al., 2008). Cytosolic NAD+ depletion resulting from these treatments was also blocked by PARP inhibitors and in PARP-1−/− neurons ((C. C. Alano et al., 2007) and Supplemental Fig. 1A,B). Thus, both neuronal death and cytosolic NAD+ depletion are attributable to PARP-1 activation under these treatment conditions.

Extracellular NAD+ enters neurons through P2X7-gated channels

We established a method of manipulating intracellular NAD+ concentrations in order to determine whether NAD+ depletion contributes to neuronal death during PARP-1 activation. Prior studies provide indirect evidence for uptake of extracellular NAD+ by neurons (T. Araki et al., 2004; J. Wang et al., 2005), and direct evidence for NAD+ uptake by other cell types (S. Bruzzone et al., 2001; C. C. Alano et al., 2004; R. A. Billington et al., 2008). Here, neurons incubated with 14C-NAD+ showed a time-dependent accumulation of the 14C label (Fig. 1A). This accumulation did not occur in the presence of NAD+ glycohydrolase, which cleaves the 14C-NAD+ to nicotinamide and 14C-ADP-ribose, thus excluding uptake ADP-ribose or other NAD+ metabolites containing only the 14C-labeled adenine moiety. Neurons incubated with millimolar concentrations of NAD+ in the medium exhibited a concentration-dependent increase in intracellular NAD+ content (Fig. 1B). This increase was blocked by brilliant blue and by pre-incubation with (ox-ATP), indicative of a P2X7-gated channel (M. Murgia et al., 1993; L. H. Jiang et al., 2000). To determine if exogenous NAD+ can replenish cellular NAD+ after PARP-1 activation, we treated neurons with MNNG (75 µM) for 30 minutes and subsequently added NAD+ to the medium. The NAD+ depletion induced by MNNG was reversed with the addition of 5 mM NAD+ to the culture medium (Fig. 1C).

Figure 1
NAD+ enters neurons through P2X7-gated channels

NAD+ repletion prevents PARP-1-mediated neuronal death

We next determined whether reversal of the NAD+ depletion caused by PARP-1 can prevent PARP-1 – induced neuronal death. Neurons were exposed to either MNNG or SIN1 for 30 minutes, these agents were washed out, and NAD+ was then added at varying concentrations. NAD+ reduce neuronal death induced by MNNG or SIN1, with a 75% reduction in cell death observed with 5 mM NAD+ (Fig. 2A,B). An end-product of NAD+ metabolism by PARP-1 is nicotinamide, which is itself a weak PARP-1 inhibitor, (P. W. Rankin et al., 1989). We therefore considered the possibility that the effects of NAD+ on neuronal survival might be due to inhibition of PARP-1 activity by augmented formation of nicotinamide. PAR formation, indicative of PARP-1 activity, was detectable in neuronal nuclei after 30 minutes of MNNG exposure. The PAR formation was blocked by the PARP inhibitor PJ34, but was not blocked by post-treatment with 5mM NAD+ (Fig. 2C), arguing against an effect of NAD+ on PARP-1 activity. Western blot analysis of PAR formation under these same conditions confirmed that NAD+ did not inhibit PARP-1 activity, but instead increased the amount of PAR polymer produced after MNNG exposure (Fig. 2D), presumably because of increased substrate availability for PARP-1. In addition, HPLC determinations of intracellular nicotinamide levels showed only modest elevations in neurons treated with NAD+ or NAD+ plus MNNG (Supplemental Fig. 2A), to levels well below the concentrations found necessary to reduce PARP-1 – mediated death (Supplemental Fig. 2B,C). Together, these data indicate that the neuroprotective effect of NAD+ is not attributable to inhibition of PARP-1 activity.

Figure 2
NAD+ repletion prevents PARP-1-mediated neuron death

We next evaluated the effect of NAD+ post-treatment on established the conditions resulting in PARP-1 – induced neuronal death in neuron-astrocyte co-cultures (Fig. 3A–C). Co-cultures were used to complement the neuronal monocultures used for the NAD+ uptake and biochemical measurements because the co-cultures more closely mimic the neuronal differentiation and astrocyte-neurons interactions present in vivo. As in the neuronal monocultures, neuronal death induced over a range of MNNG concentrations was reduced by more than 80% by the PARP inhibitor DPQ. Neuronal death induced by chemical ischemia (CI) and N-methyl-D-aspartate (NMDA) was reduced approximately 50% by DPQ, suggesting that this fraction of neuronal death is attributable to PARP-1 activation under these conditions. NAD+ had dose-dependent effects on neuronal survival in all 3 of these stressors, with a maximal effect in each condition achieved at 5 mM added NAD+ (Fig. 3D–F). NAD+ was found to significantly reduce neuronal death when given up to 2 hours after washout of MNNG or CI, and up to 1 hour after washout of NMDA (Fig. 3G–I). By contrast, DPQ had no effect when added at these delayed time points. The failure of DPQ to reduce neuronal death when added to the cultures at these delayed time points further confirms that the neuroprotective effect of NAD+ post-treatment is not attributable PARP-1 inhibition.

Figure 3
Effects of NAD+ on PARP-1 - induced neuronal death

PARP-1 activation blocks glycolysis

NAD+ is an essential co-factor at the glyceradehyde-3-phosphate dehydrogenase (GAPDH) step of glycolysis, and the depletion of NAD+ by PARP-1 has been shown to block glucose utilization and lead to cell death in non-neuronal cell types (W. Ying et al., 2002; W. X. Zong et al., 2004). Here, neurons treated with MNNG or SIN1 showed greater than 75% reductions in glucose utilization as measured by the 2-deoxyglucose method (L. Sokoloff et al., 1977), and these reductions were blocked by the PARP inhibitor PJ34 and in PARP-1−/− neurons (Fig. 4A). Measures of neuronal pyruvate concentration corroborated these results; both MNNG and SIN1 reduced neuronal pyruvate concentrations, and these reductions were also prevented by PJ34 and in PARP-1−/− neurons (Fig. 4B). Importantly, the reductions in both glycolytic rate and pyruvate content were reversed in neurons treated with 5 mM NAD+ added to the medium after PARP-1 activation (Fig. 4C,D), whereas neurons treated with 0.1 mM NAD+, which is insufficient to raise intracellular NAD+ concentrations, did not show recovery of glycolysis or pyruvate levels (not shown). Neuronal energy status measured under these conditions showed parallel changes: MNNG produced ATP depletion and a rise in AMP, both of which were blocked by co-treatment with the PARP inhibitors DPQ or PJ34 and by post-treatment with NAD+ or pyruvate (Fig. 4E,F). A block at the GAPDH step of glycolysis should also increase levels of glycolytic intermediates upstream of this step. As shown in Table 1, neurons exposed to MNNG had markedly elevated levels of dihroxyacetone phosphate, glyceraldehyde-3-phosphate, and fructose biphosphate, and these elevations were prevented both by PARP-1 inhibitors and exogenous NAD+ treatment.

Figure 4
PARP-1 activation causes a block in neuronal glycolysis that is reversed by NAD+
TABLE 1
Effects of PARP-1 activation on glycolytic intermediates upstream of GAPDH

PARP-1 – induced neuronal death is prevented by non-glycolytic substrates

If PARP-1– induced neuronal death stems from a block in glycolysis, then non-glucose substrates that do not require cytosolic NAD+ for energy metabolism should preserve neuronal viability after PARP-1 activation. Accordingly, cultures treated with pyruvate or α-ketoglutarate after wash-out of MNNG or SIN1 showed reductions in cell death that were comparable to that obtained by co-incubation with the PARP inhibitors, DPQ and PJ34 (Fig. 5A–C). Near-complete reductions in neuronal death were also observed using acetoacetate or hydroxybutyrate as non-glycolytic substrates (Supplemental Fig. 3A,B). The artificial CSF (aCSF) culture medium used for these studies contains only glucose as a metabolic substrate, in order to mimic conditions present in situ. However, most commercially available culture media also contain additional components, notably glutamine and pyruvate, that can serve as energy substrates in the absence of glycolysis, and which could thereby mask the effects of PARP-1 – induced glycolytic blockade. We therefore compared MNNG toxicity in neurons placed in either aCSF or standard culture medium (Neurobasal Medium with B27 supplement, see Methods). As expected, neurons were much less sensitive to MNNG in the standard culture medium (Supplemental Fig. 3C). This patterns was also observed with mouse cortical astrocytes and mouse embryonic fibroblasts (Supplemental Fig. 3D,E).

Figure 5
PARP-1-induced neuronal death is prevented by non-glycolytic substrates

Mitochondrial depolarization induced by PARP-1 activation is blocked by NAD+ and pyruvate

Depolarization of the mitochondrial membrane potential (Δψm) occurs after PARP-1 activation in astrocytes, neurons, and other cell types (C. C. Alano et al., 2004; S. W. Yu et al., 2006; L. Formentini et al., 2009). Cytosolic NAD+ has an essential role in providing the mitochondria with glucose carbon in the form of pyruvate, and reducing equivalents in the form of NADH (via the malate-aspartate shuttle). Cytosolic NAD+ depletion should disrupt this substrate flux and thereby lead to mitochondrial depolarization unless other energy substrates are present. Here we followed changes in Δψm with tetramethyl rhodamine methyl ester (TMRM, 1 nM) under non-quench conditions (S. Vesce et al., 2005; R. Tao et al., 2007). Neurons exposed to either MNNG or SIN1 exhibited a decrease in TMRM signal, indicating Δψm depolarization (Fig. 6). This decrease was blocked by the PARP inhibitor PJ34 and by post-treatment with either NAD+ or pyruvate (Fig. 6B,C). These findings suggest that PARP-1-induced Δψm depolarization results from glycolytic inhibition, and that either reversing this block with NAD+ or bypassing this block with pyruvate can preserve Δψm. The effects of non-glucose substrates on neuron viability and mitochondrial membrane potential after PARP-1 activation also provide a functional confirmation that the mitochondrial NAD+ pool is not depleted within the first few hours of PARP-1 activation (F. Di Lisa et al., 2001; C. C. Alano et al., 2007).

Figure 6
PARP-1 – induced mitochondrial depolarization is prevented by NAD+ and pyruvate

Depletion of cytosolic NAD+ mimics PARP-1 activation

We next sought to determine whether NAD+ depletion alone was sufficient to induce the neuronal death that results from PARP-1 activation. The Bioporter protein transfection system (O. Zelphati et al., 2001) was used to introduce NAD+ glycohydrolase (NADase) into the neuronal cytosol. Neurons transfected with NADase showed a significant decrease in NAD+ content within 3 hours (Fig. 7A). NAD+ content in mitochondria isolated from these cells was unchanged (not shown), confirming that NADase transfection depleted only the cytosolic NAD+ pool. The maximal degree of NAD+ depletion resulting from NADase transfection was about 50%, consistent with our previous report finding that cytosolic NAD+ accounts for approximately 50% of the total neuronal NAD+ (C. C. Alano et al., 2007). The decrease in NAD+ was prevented in cells co-cultured with 0.2 mM nicotinamide (NAM), an NADase inhibitor. Cultures treated with NADase also exhibited a dose-dependent loss of neuronal viability that was prevented by NAM (Fig. 7B) and by NAD+ repletion with exogenous NAD+ (Fig. 7C). These effects of NADase on NAD+ content and neuronal viability were comparable in wild-type and PARP-1−/− neurons (Fig. 6A), suggesting that the decrease in cytosolic NAD+ alone, independent of PARP-1 activation, is sufficient to cause neuronal death. NADase, like PARP-1 activation, also blocked neuronal glucose utilization and reduced pyruvate concentrations (Supplementary Fig. 4). Also like PARP-1 activation, the neuronal death resulting from NADase transfection was prevented by exogenous pyruvate, whereas the glycolytic block was not (Supplementary Fig. 4).

Figure 7
Depletion of cytosolic NAD+ with NADase kills neurons independent of PARP-1 activation

AIF translocation induced by PARP-1 or NADase is prevented by pyruvate

Translocation of AIF from mitochondria to nucleus is considered a necessary step in the PARP-1 cell death pathway. Here, AIF immunoreactivity was reproducibly observed in the nucleus beginning 3–4 hours after 30-minute incubations with 75 µM MNNG (Fig. 8A). The AIF translocation was blocked by PJ34, confirming the role of PARP-1 activation in this process. The AIF translocation was also blocked by the addition of 5 mM NAD+ after MNNG washout, suggesting that cytosolic NAD+ depletion is necessary for PARP-1- induced AIF translocation. We then used NADase to determine whether NAD+ depletion is sufficient to induce AIF translocation. NADase transfection induced nuclear AIF translocation in both wild-type and PARP-1−/− neurons (Fig. 8 B , C), and the AIF translocation induced by either PARP-1 activation or NADase was blocked by pyruvate (Fig. 8A–C). These results obtained by immunostaining were confirmed by western blots for AIF in mitochondria isolated from neurons at designated time points after NADase transfection. The western blots showed significant loss of AIF from the mitochondria 4 hours after NADase treatment, and this was blocked by the addition of pyruvate (Fig. 8D,E). Effectiveness of the subcellular fractionation was verified by the enrichment of the mitochondrial marker VDAC and absence of the nuclear marker histone H2B (not shown). For technical reasons it was not possible to isolate a nuclear fraction that was completely devoid of mitochondrial contamination (not shown).

Figure 8
AIF translocation induced by PARP-1 or NADase is prevented by pyruvate

The ability of pyruvate to block AIF translocation induced by either PARP-1 or NADase suggests that AIF release results from the glycolytic block and mitochondrial depolarization induced by NAD+ depletion. To confirm that glycolytic failure can lead to AIF release, we assayed mitochondrial AIF after placing neurons in glucose-free medium. This condition replicated the effects of PARP-1 activation and NADase; glucose-free media led to a decrease in mitochondrial AIF in both wild-type and PARP-1−/− neurons, and this decrease was prevented by the addition of pyruvate (Fig. 8 F , G).

MPT inhibitors block AIF release

Mitochondrial permeability transition (MPT) can be triggered by mitochondrial depolarization, and prior studies have shown that MPT can trigger AIF release from mitochondria (P. X. Petit et al., 1998; C. C. Alano et al., 2004; B. M. Polster et al., 2005). MPT induced by mitochondrial depolarization could thus provide a mechanism linking cytosolic NAD+ depletion to mitochondrial release of AIF. We evaluated this possibility using both the classical MPT inhibitor cyclosporine-A (CsA; 250 nM) and an alternative MPT inhibitor sanglifehrin-A (SfA; 250 nM), which is a potent inhibitor of the mitochondrial permeability transition (S. J. Clarke et al., 2002), and which does not inhibit calcineurin activity (G. Zenke et al., 2001; E. Sanchez-Tillo et al., 2006). Both agents prevented the mitochondria-to-nucleus translocation of AIF that otherwise resulted from neuronal PARP-1 activation (Fig. 9 A–C). The MPT inhibitors, unlike pyruvate, did not prevent the mitochondrial membrane depolarization (Δψm) that occurred during the initial 30 minutes after PARP-1 activation, thus arguing against the possibility that MPT was a cause rather than a result of Δψm (Fig. 9D). However, treatment with either CsA or SfA at the 30 minute time point did prevent the total collapse of Δψm otherwise seen at the 4 hours time point, consistent with an effect on MPT (Fig. 9D).

Figure 9
MPT inhibitors block mitochondrial AIF release

DISCUSSION

PARP-1 activation is a major cause of neuronal death in brain ischemia, trauma, and other settings, but the role of NAD+ depletion in this cell death pathway has been unresolved. The present findings show that PARP-1-mediated neuronal death is blocked when NAD+ depletion is prevented with exogenous NAD+. NAD+ repletion also prevents the intermediary steps in this cell death pathway that otherwise result from PARP-1 activation: glycolytic inhibition, mitochondrial depolarization, and mitochondrial AIF release. Conversely, depletion of cytosolic NAD+ with NAD+ glycohydrolase causes glycolytic inhibition and mitochondrial AIF release, independent of PARP-1 activation. These findings establish cytosolic NAD+ depletion as a necessary and sufficient event in the PARP-1 cell death pathway.

The cytosolic and mitochondrial NAD+ pools are physically separated by the mitochondrial membrane, and only the cytosolic pool is accessible to nuclear PARP-1 unless mitochondrial disruption or mitochondrial permeability transition occur (F. Di Lisa et al., 2001; C. C. Alano et al., 2007). Cytosolic NAD+ is required for the GAPDH step of glycolysis, and studies using other cell types have shown that PARP-1 activation can cause a block in glycolysis (W. X. Zong et al., 2004; J. Verrax et al., 2007) that is reversible with NAD+ repletion (C. C. Alano et al., 2004; W. X. Zong et al., 2004). The glycolytic inhibition that results from NAD+ depletion blocks the flux of glucose-derived pyruvate and NADH reducing equivalents to the mitochondria. This block provides a biochemical link between cytosolic NAD+ depletion and mitochondrial failure, because the mitochondrial membrane potential cannot be maintained in the absence of energy substrates. Moreover, the rise in AMP that results from this block can inhibit the mitochondrial adenine transporter (L. Formentini et al., 2009), an effect that could further contribute to mitochondrial depolarization. Mitochondrial depolarization promotes mitochondrial membrane permeability transition (MPT), and MPT can in turn trigger mitochondrial AIF release (P. X. Petit et al., 1998; C. C. Alano et al., 2004; B. M. Polster et al., 2005). Here, a role for MPT in PARP-1 – induced AIF release was supported by the suppression of AIF release in cells treated with the MPT inhibitors CsA and SfA. The use of CsA is highly criticized because, in addition to binding cyclophilin D to inhibit MPT pore opening, it can also bind to other cyclophilins, such as cyclophilin A, which in turn inhibits calcineurin, a calcium dependent protein phosphatase demonstrated to have many intracellular roles. Although SfA has been shown to bind cyclophilin A, it does not inhibit calcineurin activity (G. Zenke et al., 2001; E. Sanchez-Tillo et al., 2006).

Prior studies using PAR neutralizing antibody and exogenous delivery of PAR to neurons, have suggested an essential role for PAR itself in AIF release and PARP-1 - mediated neuronal death (S. A. Andrabi et al., 2006). In addition, AMP generated by PAR degradation can contribute to mitochondrial depolarization (L. Formentini et al., 2009). However, results of the present studies suggest that PARP-1 induced mitochondrial failure and cell death can occur independent of these effects, because (1) AIF translocation was blocked by NAD+ repletion and by pyruvate treatment, despite abundant PAR formation, and (2) AIF translocation and cell death occurred after NAD+ depletion even in PARP-1−/− neurons, in which PAR production is minimal (V. Schreiber et al., 2006). We propose that the effects of NAD+ depletion and PAR on AIF translocation may be context dependent. The present studies were performed using a medium containing glucose as the only energy substrate, in order to approximate the composition of brain extracellular fluid. The flux of carbon and reducing equivalents to the mitochondria is almost entirely dependent on glycolysis under these conditions. Standard culture medium, unlike brain extracellular fluid, contains substantial concentrations of amino acids and other substrates that do not require glycolysis or NAD+ for entry into oxidative metabolism, and which have been shown to rescue neurons and other cell types from PARP-1 induced cell death (W. Ying et al., 2002; W. X. Zong et al., 2004). Consequently, studies performed in standard culture medium may not replicate this aspect of PARP-1 activation in brain.

MNNG and SIN1 were used in these studies to induce nuclear PARP-1 activity and NAD+ depletion, but these compounds can also have direct effects on mitochondria (G. Dodoni et al., 2004). The lack of any detectable effect on mitochondria membrane potential or cell viability when these agents were used in the presence of PARP inhibitors or in PARP-1−/− cells argues against a significant direct effect on mitochondria under the conditions employed here. It is nevertheless possible that these agents could have a more subtle “sensitizing” effect on mitochondria, whereby they increase the likelihood of MPT when mitochondria are depolarized (G. Dodoni et al., 2004). This possibility cannot be excluded, but the results obtained with NADase transfection indicate that cytosolic NAD+ depletion alone is sufficient to induce mitochondrial AIF release and neuronal death.

Though prior studies have shown that exogenous NAD+ can replenish neuronal NAD+ levels (T. Araki et al., 2004; S. Wang et al., 2008), the mechanism of uptake into neurons has not previously been established. Results presented here indicate that NAD+ uptake occurs through P2X7 receptor-gated channels. P2X7 receptors are activated by ATP and other signals (R. X. Faria et al., 2005), and exhibit a basal state of conductance in some cell types (K. Nagasawa et al., 2009). P2X7 receptors are expressed on many cell types, including neurons (B. Sperlagh et al., 2006). Recent evidence suggests that the pore itself is formed by a separate protein, pannexin-1, rather than by the P2X7 receptor alone; (P. Pelegrin and A. Surprenant, 2006). Brilliant blue and oxidized ATP are potent inhibitors of the P2X7 receptor, and in the present studies these inhibitors completely blocked NAD+ uptake into neurons, (C. M. Anderson and M. Nedergaard, 2006), but we cannot entirely exclude a role for other purinergic receptors that are also associated with pore formation.

Measures of brain NAD+ changes in vivo are influenced by both mitochondrial and cyotosolic NAD+ pools, and by the presence of both neuronal and non-neuronal cells. Nevertheless, an early fall in total NAD+ has been reported after brain ischemia and brain trauma in most studies where this has been evaluated (M. Endres et al., 1997; W. Paschen et al., 2000; J. Yang et al., 2002; R. S. Clark et al., 2007; D. Liu et al., 2009). PARP-1 inhibitors prevent this drop and provide robust neuroprotection in these settings, but most be administered within a very short period of time after these insults to be effective (R. S. Clark et al., 2007; F. Moroni, 2008). A notable aspect of the studies presented here is that NAD+ repletion can prevent PARP-1-induced neuronal death when added hours after the PARP-1 – inducing injury stimulus has ceased and PARP-1 inhibitors no longer have a neuroprotective effect. The effect of NAD+ at these delayed time points suggests that it may be possible to similarly target downstream events in the PARP-1 cell death pathway in brain ischemia, brain trauma, or other settings in order to extend the window of opportunity for intervening in these disorders.

Supplementary Material

Supp1

Acknowledgements

This work was supported by the National Institutes of Health (NS14543, RAS), the Dept. of Veterans Affairs (CCA, RAS, WY), and the American Heart Association (CCA).

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