My NCBISign In
Integrating phenotype ontologies across multiple species
Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith, Melissa A Haendel, Suzanna E Lewis, Michael Ashburner
Genome Biol. 2010; 11(1): R2. Published online 2010 January 8. doi: 10.1186/gb-2010-11-1-r2
PMCID:
PMC2847714
Abstract Full Text PDF–842K

Is Cited by the Following 23 Articles in this Archive:

MouseFinder: candidate disease genes from mouse phenotype data
Chao-Kung Chen, Christopher J Mungall, Georgios V Gkoutos, Sandra C Doelken, Sebastian Köhler, Barbara J Ruef, Cynthia Smith, Monte Westerfield, Peter N Robinson, Suzanna E Lewis, Paul N Schofield, Damian Smedley
Hum Mutat. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: Hum Mutat. 2012 May; 33(5): 858–866. Published online 2012 March 16. doi: 10.1002/humu.22051
PMCID:
PMC3327758
Free in PMC on 2013/05/01
Uberon, an integrative multi-species anatomy ontology
Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel
Genome Biol. 2012; 13(1): R5. Published online 2012 January 31. doi: 10.1186/gb-2012-13-1-r5
PMCID:
PMC3334586
Abstract Full Text PDF–1.1M Supplementary Material
Disease Ontology: a backbone for disease semantic integration
Lynn Marie Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren Alden Kibbe
Nucleic Acids Res. 2012 January; 40(D1): D940–D946. Published online 2011 November 12. doi: 10.1093/nar/gkr972
PMCID:
PMC3245088
Abstract Full Text PDF–1.9M
Improving ontologies by automatic reasoning and evaluation of logical definitions
Sebastian Köhler, Sebastian Bauer, Chris J Mungall, Gabriele Carletti, Cynthia L Smith, Paul Schofield, Georgios V Gkoutos, Peter N Robinson
BMC Bioinformatics. 2011; 12: 418. Published online 2011 October 27. doi: 10.1186/1471-2105-12-418
PMCID:
PMC3224779
Abstract Full Text PDF–573K
New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models
Paul N. Schofield, John P. Sundberg, Robert Hoehndorf, Georgios V. Gkoutos
Brief Funct Genomics. 2011 September; 10(5): 258–265. Published online 2011 October 8. doi: 10.1093/bfgp/elr031
PMCID:
PMC3189694
Free in PMC on 2012/09/01
Integrating systems biology models and biomedical ontologies
Robert Hoehndorf, Michel Dumontier, John H Gennari, Sarala Wimalaratne, Bernard de Bono, Daniel L Cook, Georgios V Gkoutos
BMC Syst Biol. 2011; 5: 124. Published online 2011 August 11. doi: 10.1186/1752-0509-5-124
PMCID:
PMC3170340
Abstract Full Text PDF–984K
OBML – Ontologies in Biomedicine and Life Sciences
Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe, Stefan Schulz
J Biomed Semantics. 2011; 2(Suppl 4): I1. Published online 2011 August 9. doi: 10.1186/2041-1480-2-S4-I1
PMCID:
PMC3194167
Abstract Full Text PDF–224K
Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
PLoS One. 2011; 6(7): e22006. Published online 2011 July 18. doi: 10.1371/journal.pone.0022006
PMCID:
PMC3138764
Abstract Full Text PDF–387K
PhenomeNET: a whole-phenome approach to disease gene discovery
Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos
Nucleic Acids Res. 2011 October; 39(18): e119. Published online 2011 July 6. doi: 10.1093/nar/gkr538
PMCID:
PMC3185433
Abstract Full Text PDF–1.6M
Computable visually observed phenotype ontological framework for plants
Jaturon Harnsomburana, Jason M Green, Adrian S Barb, Mary Schaeffer, Leszek Vincent, Chi-Ren Shyu
BMC Bioinformatics. 2011; 12: 260. Published online 2011 June 24. doi: 10.1186/1471-2105-12-260
PMCID:
PMC3149582
Abstract Full Text PDF–5.4M Supplementary Material
Developing a kidney and urinary pathway knowledge base
Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens
J Biomed Semantics. 2011; 2(Suppl 2): S7. Published online 2011 May 17. doi: 10.1186/2041-1480-2-S2-S7
PMCID:
PMC3102896
Abstract Full Text PDF–718K
PHENOPSIS DB: an Information System for Arabidopsis thaliana phenotypic data in an environmental context
Juliette Fabre, Myriam Dauzat, Vincent Nègre, Nathalie Wuyts, Anne Tireau, Emilie Gennari, Pascal Neveu, Sébastien Tisné, Catherine Massonnet, Irène Hummel, Christine Granier
BMC Plant Biol. 2011; 11: 77. Published online 2011 May 9. doi: 10.1186/1471-2229-11-77
PMCID:
PMC3112076
Abstract Full Text PDF–856K Supplementary Material
A common layer of interoperability for biomedical ontologies based on OWL EL
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala Wimalaratne, Dietrich Rebholz-Schuhmann, Paul Schofield, Georgios V. Gkoutos
Bioinformatics. 2011 April 1; 27(7): 1001–1008. Published online 2011 February 21. doi: 10.1093/bioinformatics/btr058
PMCID:
PMC3065691
Abstract Full Text PDF–126K
Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community
Gary Schindelman, Jolene S Fernandes, Carol A Bastiani, Karen Yook, Paul W Sternberg
BMC Bioinformatics. 2011; 12: 32. Published online 2011 January 24. doi: 10.1186/1471-2105-12-32
PMCID:
PMC3039574
Abstract Full Text PDF–2.8M Supplementary Material
The RIKEN integrated database of mammals
Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda
Nucleic Acids Res. 2011 January; 39(Database issue): D861–D870. Published online 2010 November 13. doi: 10.1093/nar/gkq1078
PMCID:
PMC3013680
Abstract Full Text PDF–8.9M
Laboratory Mouse Models for the Human Genome-Wide Associations
Georgios D. Kitsios, Navdeep Tangri, Peter J. Castaldi, John P. A. Ioannidis
PLoS One. 2010; 5(11): e13782. Published online 2010 November 1. doi: 10.1371/journal.pone.0013782
PMCID:
PMC2967475
Abstract Full Text PDF–195K Supplementary Material
Interoperability between phenotype and anatomy ontologies
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann
Bioinformatics. 2010 December 15; 26(24): 3112–3118. Published online 2010 October 22. doi: 10.1093/bioinformatics/btq578
PMCID:
PMC2995119
Abstract Full Text PDF–143K
ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
Olivier Arnaiz, Linda Sperling
Nucleic Acids Res. 2011 January; 39(Database issue): D632–D636. Published online 2010 October 14. doi: 10.1093/nar/gkq918
PMCID:
PMC3013783
Abstract Full Text PDF–3.7M
Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
Wasila M. Dahdul, James P. Balhoff, Jeffrey Engeman, Terry Grande, Eric J. Hilton, Cartik Kothari, Hilmar Lapp, John G. Lundberg, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
PLoS One. 2010; 5(5): e10708. Published online 2010 May 20. doi: 10.1371/journal.pone.0010708
PMCID:
PMC2873956
Abstract Full Text PDF–370K Supplementary Material
Phenex: Ontological Annotation of Phenotypic Diversity
James P. Balhoff, Wasila M. Dahdul, Cartik R. Kothari, Hilmar Lapp, John G. Lundberg, Paula Mabee, Peter E. Midford, Monte Westerfield, Todd J. Vision
PLoS One. 2010; 5(5): e10500. Published online 2010 May 5. doi: 10.1371/journal.pone.0010500
PMCID:
PMC2864769
Abstract Full Text PDF–884K
Applying the functional abnormality ontology pattern to anatomical functions
Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Janet Kelso
J Biomed Semantics. 2010; 1: 4. Published online 2010 March 31. doi: 10.1186/2041-1480-1-4
PMCID:
PMC2895731
Abstract Full Text PDF–592K
The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age
Wasila M. Dahdul, John G. Lundberg, Peter E. Midford, James P. Balhoff, Hilmar Lapp, Todd J. Vision, Melissa A. Haendel, Monte Westerfield, Paula M. Mabee
Syst Biol. 2010 July; 59(4): 369–383. Published online 2010 March 29. doi: 10.1093/sysbio/syq013
PMCID:
PMC2885267
Abstract Full Text PDF–533K
Cross-Product Extensions of the Gene Ontology
Christopher J. Mungall, Michael Bada, Tanya Z. Berardini, Jennifer Deegan, Amelia Ireland, Midori A. Harris, David P. Hill, Jane Lomax
J Biomed Inform. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: J Biomed Inform. 2011 February; 44(1): 80–86. Published online 2010 February 10. doi: 10.1016/j.jbi.2010.02.002
PMCID:
PMC2910209
Abstract Full Text PDF–414K
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk