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Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays
Tatiana Popova, Elodie Manié, Dominique Stoppa-Lyonnet, Guillem Rigaill, Emmanuel Barillot, Marc Henri Stern
Genome Biol. 2009; 10(11): R128. Published online 2009 November 11. doi: 10.1186/gb-2009-10-11-r128
PMCID:
PMC2810663
Abstract Full Text PDF–2.8M Supplementary Material
 Is Cited by the Following 5 Articles in this Archive:
Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
Valentina Boeva, Tatiana Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot
Bioinformatics. 2012 February 1; 28(3): 423–425. Published online 2011 December 6. doi: 10.1093/bioinformatics/btr670
PMCID:
PMC3268243
Abstract Full Text PDF–269K Supplementary Material
Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data
Susann Stjernqvist, Tobias Rydén, Chris D. Greenman
Cancer Inform. 2011; 10: 159–173. Published online 2011 May 25. doi: 10.4137/CIN.S6873
PMCID:
PMC3118450
Abstract Full Text PDF–2.6M
GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays
Ao Li, Zongzhi Liu, Kimberly Lezon-Geyda, Sudipa Sarkar, Donald Lannin, Vincent Schulz, Ian Krop, Eric Winer, Lyndsay Harris, David Tuck
Nucleic Acids Res. 2011 July; 39(12): 4928–4941. Published online 2011 March 11. doi: 10.1093/nar/gkr014
PMCID:
PMC3130254
Abstract Full Text PDF–9.7M Supplementary Material
A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data
Christopher Yau, Dmitri Mouradov, Robert N Jorissen, Stefano Colella, Ghazala Mirza, Graham Steers, Adrian Harris, Jiannis Ragoussis, Oliver Sieber, Christopher C Holmes
Genome Biol. 2010; 11(9): R92. Published online 2010 September 21. doi: 10.1186/gb-2010-11-9-r92
PMCID:
PMC2965384
Abstract Full Text PDF–1.5M Supplementary Material
Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis
Eric Letouzé, Yves Allory, Marc A Bollet, François Radvanyi, Frédéric Guyon
Genome Biol. 2010; 11(7): R76. Published online 2010 July 22. doi: 10.1186/gb-2010-11-7-r76
PMCID:
PMC2926787
Abstract Full Text PDF–3.8M Supplementary Material
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