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Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen
J Biol. 2009; 8(11): 95. Published online 2009 December 14. doi: 10.1186/jbiol204
PMCID:
PMC2804285
Abstract Full Text PDF–177K

Is Cited by the Following 20 Articles in this Archive:

Nucleosome organization affects the sensitivity of gene expression to promoter mutations
Gil Hornung, Moshe Oren, Naama Barkai1
Mol Cell. Author manuscript; available in PMC 2013 May 11.
Published in final edited form as: Mol Cell. 2012 May 11; 46(3): 362–368. Published online 2012 March 29. doi: 10.1016/j.molcel.2012.02.019
PMCID:
PMC3356688
Free in PMC on 2013/05/11
Promoter Nucleosome Organization Shapes the Evolution of Gene Expression
Dalia Rosin, Gil Hornung, Itay Tirosh, Ariel Gispan, Naama Barkai
PLoS Genet. 2012 March; 8(3): e1002579. Published online 2012 March 15. doi: 10.1371/journal.pgen.1002579
PMCID:
PMC3305400
Abstract Full Text PDF–1.1M Supplementary Material
Linking Genome to Epigenome
Guo-Cheng Yuan
Wiley Interdiscip Rev Syst Biol Med. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Wiley Interdiscip Rev Syst Biol Med. 2012 May; 4(3): 297–309. Published online 2012 February 17. doi: 10.1002/wsbm.1165
PMCID:
PMC3328655
Abstract Full Text PDF–203K
Chromatin and Transcription in Yeast
Oliver J. Rando, Fred Winston
Genetics. 2012 February; 190(2): 351–387. doi: 10.1534/genetics.111.132266
PMCID:
PMC3276623
Free in PMC on 2013/02/01
Evolution of Nucleosome Occupancy: Conservation of Global Properties and Divergence of Gene-Specific Patterns
Kyle Tsui, Sébastien Dubuis, Marinella Gebbia, Randall H. Morse, Naama Barkai, Itay Tirosh, Corey Nislow
Mol Cell Biol. 2011 November; 31(21): 4348–4355. doi: 10.1128/MCB.05276-11
PMCID:
PMC3209338
Abstract Full Text PDF–1.8M Supplementary Material
Inferring regulatory mechanisms from patterns of evolutionary divergence
Itay Tirosh, Naama Barkai
Mol Syst Biol. 2011; 7: 530. Published online 2011 September 13. doi: 10.1038/msb.2011.60
PMCID:
PMC3202799
Abstract Full Text PDF–956K
Proteome-wide evidence for enhanced positive Darwinian selection within intrinsically disordered regions in proteins
Johan Nilsson, Mats Grahn, Anthony PH Wright
Genome Biol. 2011; 12(7): R65. Published online 2011 July 19. doi: 10.1186/gb-2011-12-7-r65
PMCID:
PMC3218827
Abstract Full Text PDF–1.0M Supplementary Material
Patterns and Mechanisms of Ancestral Histone Protein Inheritance in Budding Yeast
Marta Radman-Livaja, Kitty F. Verzijlbergen, Assaf Weiner, Tibor van Welsem, Nir Friedman, Oliver J. Rando, Fred van Leeuwen
PLoS Biol. 2011 June; 9(6): e1001075. Published online 2011 June 7. doi: 10.1371/journal.pbio.1001075
PMCID:
PMC3110181
Abstract Full Text PDF–4.5M Supplementary Material
Nucleosome Positioning in Saccharomyces cerevisiae
An Jansen, Kevin J. Verstrepen
Microbiol Mol Biol Rev. 2011 June; 75(2): 301–320. doi: 10.1128/MMBR.00046-10
PMCID:
PMC3122627
Free in PMC on 2012/06/01
Core promoter T-blocks correlate with gene expression levels in C. elegans
Vladislav Grishkevich, Tamar Hashimshony, Itai Yanai
Genome Res. 2011 May; 21(5): 707–717. doi: 10.1101/gr.113381.110
PMCID:
PMC3083087
Abstract Full Text PDF–1.3M
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F1 interspecies hybrids
Yingjia Shen, Julian Catchen, Tzintzuni Garcia, Angel Amores, Ion Beldroth, Jonathon R Wagner, Ziping Zhang, John Postlethwait, Wes Warren, Manfred Schartl, Ronald B. Walter
Comp Biochem Physiol C Toxicol Pharmacol. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Comp Biochem Physiol C Toxicol Pharmacol. 2012 January; 155(1): 102–108. Published online 2011 April 3. doi: 10.1016/j.cbpc.2011.03.012
PMCID:
PMC3178741
Free in PMC on 2013/01/01
A Tradeoff Drives the Evolution of Reduced Metal Resistance in Natural Populations of Yeast
Shang-Lin Chang, Jun-Yi Leu
PLoS Genet. 2011 March; 7(3): e1002034. Published online 2011 March 31. doi: 10.1371/journal.pgen.1002034
PMCID:
PMC3069115
Abstract Full Text PDF–826K Supplementary Material
Robustness and evolvability in the B-system of flower development
K. Geuten, T. Viaene, V. F. Irish
Ann Bot. 2011 June; 107(9): 1545–1556. Published online 2011 March 25. doi: 10.1093/aob/mcr061
PMCID:
PMC3108807
Free in PMC on 2012/06/01
Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level
Elizabeth A. Rach, Deborah R. Winter, Ashlee M. Benjamin, David L. Corcoran, Ting Ni, Jun Zhu, Uwe Ohler
PLoS Genet. 2011 January; 7(1): e1001274. Published online 2011 January 13. doi: 10.1371/journal.pgen.1001274
PMCID:
PMC3020932
Abstract Full Text PDF–3.1M Supplementary Material
A systems biology model of the regulatory network in Populus leaves reveals interacting regulators and conserved regulation
Nathaniel Robert Street, Stefan Jansson, Torgeir R Hvidsten
BMC Plant Biol. 2011; 11: 13. Published online 2011 January 13. doi: 10.1186/1471-2229-11-13
PMCID:
PMC3030533
Abstract Full Text PDF–2.8M Supplementary Material
Chromatin regulators as capacitors of interspecies variations in gene expression
Itay Tirosh, Sharon Reikhav, Nadejda Sigal, Yael Assia, Naama Barkai
Mol Syst Biol. 2010; 6: 435. Published online 2010 November 30. doi: 10.1038/msb.2010.84
PMCID:
PMC3010112
Abstract Full Text PDF–573K Supplementary Material
Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution
Ken Daigoro Yokoyama, Jeffrey L. Thorne, Gregory A. Wray
Genome Biol Evol. 2011; 3: 66–74. Published online 2010 November 30. doi: 10.1093/gbe/evq078
PMCID:
PMC3021792
Abstract Full Text PDF–211K
Conflict between Noise and Plasticity in Yeast
Ben Lehner
PLoS Genet. 2010 November; 6(11): e1001185. Published online 2010 November 4. doi: 10.1371/journal.pgen.1001185
PMCID:
PMC2973811
Abstract Full Text PDF–679K Supplementary Material
Rapid Expansion and Functional Divergence of Subtelomeric Gene Families in Yeasts
Chris A. Brown, Andrew W. Murray, Kevin J. Verstrepen
Curr Biol. Author manuscript; available in PMC 2011 May 25.
Published in final edited form as: Curr Biol. 2010 May 25; 20(10): 895–903. Published online 2010 May 13. doi: 10.1016/j.cub.2010.04.027
PMCID:
PMC2877759
Abstract Full Text PDF–1.1M Supplementary Material
Gene regulation, evolvability and the limits of genomics
Miranda Robertson
J Biol. 2009; 8(11): 94. Published online 2009 December 24. doi: 10.1186/jbiol209
PMCID:
PMC2804289
Full Text PDF–52K
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