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Nat Chem Biol. Author manuscript; available in PMC Jan 1, 2010.
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PMCID: PMC2784199
NIHMSID: NIHMS98505

Green fluorescent proteins are light-induced electron donors

Abstract

Proteins of the green fluorescent protein (GFP) family are well known due to their unique biochemistry and extensive use as in vivo markers. Here, we discovered a new feature of GFPs of diverse origins to act as the light-induced electron donors in photochemical reactions with various electron acceptors, including biologically relevant ones. Moreover, this process accompanying with green-to-red GFP photoconversion can be observed in living cells without additional treatment.

Green fluorescent protein (GFP) from the jellyfish Aequorea victoria and its artificial mutants are widely used in cell biology and biomedical research as genetically encoded fluorescent markers1. In the past decade, a number of GFP-like proteins have been found in diverse marine creatures—corals2, copepods3, and even lower chordates4. Detailed biochemical and crystallographic studies have showed a remarkable diversity of chromophore structures that explain wide spectral variations in GFP-like proteins57.

In addition, diverse photoconversions have been demonstrated for fluorescent proteins8,9. In particular, in 1997, an intriguing phenomenon was described: under anaerobic conditions GFP and some of its mutants underwent efficient photoconversion into a red fluorescent state10,11. We use the term “redding” to describe this photoconversion. Little is known about the structural basis of GFP redding. It occurs only if the oxygen concentration in the superfusing gas is below 1%12. Red fluorescence possesses excitation-emission maxima at 525 and 600 nm, respectively10, and a fluorescence lifetime of 2.5 ns13. The red fluorescent form is stable for many hours in the absence of molecular oxygen, but it disappears quickly after re-oxygenation of the sample10,12,13. The structure and mechanisms of the formation of the GFP red state are unclear, and no hypothesis has been proposed.

Here, using confocal and fluorescence microscopy, we studied the influence of external agents on photobehavior of His-tagged EGFP immobilized on metal affinity beads (Supplementary Methods online). To our surprise, we observed very efficient green-to-red EGFP photoconversion when various electron acceptors were present in the medium. In contrast to anaerobic redding discussed above, EGFP redding with oxidants can be performed under both aerobic and anaerobic conditions. Such “oxidative redding” was detected with K3[Fe(CN)6] (potassium ferricyanide), benzoquinone (1), and 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyl tetrazolium bromide (MTT, 2). In the presence on these chemicals, irradiation with a 488 nm laser line resulted in greatly accelerated bleaching of the green fluorescence and appearance of the red signal (Fig. 1a). As expected with MTT, a blue insoluble precipitate of the reduced formazan was detected on the irradiated areas of EGFP-containing beads. Notably, we observed drastically different degrees of dependence on oxidant concentration for rates of green fluorescence decrease and red fluorescence increase (Fig. 1b, Supplementary Fig. 1). For all compounds tested, the EC50 (half maximal effective concentration) for EGFP bleaching was much (in some cases an order of magnitude) lower than that for the appearance of red fluorescence (Supplementary Table 1). This difference suggests that EGFP redding can be a two-step process (Fig. 1c). Measurements of EGFP redding efficiency at different light intensities showed a linear dependence (Supplementary Fig. 2). Thus, this photoconversion is a one-photon process, and we assume that a photon is absorbed at the first step of the proposed scheme. The nature of the red GFP state is unclear. A possible explanation is that, as a result of a two-electron oxidation, a DsRed-like red chromophore14 is formed.

Figure 1
Oxidant-mediated green-to-red photoconversion of EGFP in vitro. (a) Confocal images of benzoquinone-mediated photoconversion of EGFP immobilized on a metal-affinity bead in green (left) and red (center) channels, and their overlay (right). A region on ...

Oxidative redding of an EGFP solution in the presence of potassium ferricyanide in a cuvette showed red fluorescence spectra with excitation and emission maxima at 575 and 607 nm, respectively (Supplementary Fig. 3a). Quantum yield of red fluorescence was about 0.05.

After oxidative redding at low concentrations of oxidants (e.g., 1 µM benzoquinone) the red signal did not decrease for at least 1 h observation. High concentrations (1 mM) of oxidants resulted in gradual decay of red fluorescence with a half-life of about 0.5 h. Fast disappearance of the red signal could be induced by addition of β-mercaptoethanol, while reduced glutathione (3) and ascorbate (4) did not affect stability of the red form. It is reasonable to expect reversibility of oxidative redding, i.e., disappearance of red fluorescence would result in reappearance of green signal. However, experimentally we did not observe proportional increase of green fluorescence during decay (either spontaneous or β-mercaptoethanol-induced) of EGFP red form. Thus, the red chromophore converts into a spectrally undetectable form. It could be the GFP-like chromophore in a non-fluorescent state or a new unknown structure.

Next we tested biologically relevant electron acceptors. EGFP oxidative redding was found to occur in the presence of cytochrome c (cyt c)15; flavin adenine dinucleotide (FAD, 5) and flavin mononucleotide (FMN, 6); FAD-containing flavoprotein glucose oxidase, which belongs to the same structural class as ubiquitous and abundant enzymes of cell redox homeostasis such as glutathione reductase and thioredoxin reductase16; and nicotinamide adenine dinucleotide (NAD+, 7). So, excited EGFP was able to reduce compounds with E´0 (the standard oxidation-reduction potential) of up to −0.32 V (Supplementary Table 1). Importantly, appearance of reduced forms of cyt c and NAD+ after EGFP oxidative redding was detected by absorption spectroscopy (Supplementary Fig. 3b,c). We estimated the yield of the redox reaction between EGFP and cyt c to be about 1.7 that suggests that EGFP oxidation is a two-electron process that can generate two reduced cyt c molecules per EGFP molecule. Interestingly, in the case of flavin-based oxidants, there was almost no difference in the EC50 calculated for the bleaching of green and activation of red fluorescence (Supplementary Table 1). It is likely that these oxidants are able to accept two electrons at once, thus promoting a one-step formation of the EGFP red state. Neither oxidized nor reduced glutathione, which are abundant components of cell redox homeostasis system, induced green-to-red EGFP photoconversion (concentrations up to 30 mM have been tested).

Then we tested other GFPs of diverse origins, such as AcGFP1, TagGFP, zFP506, amFP486, and ppluGFP2 and found that all these proteins undergo oxidative redding (Supplementary Table 2). However, the blue and cyan mutants of GFP, EBFP and ECFP, showed no oxidant-mediated photoconversion. Our recent study demonstrated that several diverse green and cyan fluorescent proteins can undergo anaerobic redding, but ECFP can not17. Thus, for both oxidative and anaerobic redding the chromophore should be based on tyrosine to be converted into the red state.

We tried out whether EGFP can find appropriate electron acceptors and undergo green-to-red photoconversion within live mammalian cells. Indeed, green-to-red photoconversion was observed in HEK293-derived Phoenix Eco cell line transiently transfected with an EGFP-N1 vector. Blue light irradiation resulted in a gradual decrease of green fluorescence and a proportional increase of red fluorescence in living cells (Fig. 2a). Unexpectedly, individual cells demonstrated very high variability of EGFP redding rate (Fig. 2b). No clear correlations between cell morphology or EGFP expression level and redding efficiency were revealed.

Figure 2
Green-to-red photoconversion of GFPs in live cells. (a) Fluorescence microscopy of Phoenix Eco cells transiently expressing EGFP-N1 in green (upper row) and red (center row) channels. Bottom row represents an overlay of the green and red images. Numbers ...

Then we compared the efficiency of EGFP redding in three cell lines: HEK293, HeLa, and 3T3. We detected redding of different intensities, with very large differences between individual cells within each cell line (Fig. 2c).

Mitochondria represent the most reducing and redox-active compartment of mammalian cells18. Redding of EGFP targeted to mitochondria was tested in the Phoenix Eco, HEK293, and HeLa cell lines. Only in HEK293 cells EGFP-mito redding was efficient, while other cell lines showed a much lower level of green-to-red photoconversion (Fig. 2d). Notably, the difference between individual cells was rather low. Generally, the rate of red fluorescence increase during the course of EGFP-mito redding was considerably faster than that of cytoplasmic EGFP under the same illumination conditions, even when compared to EGFP-N1-expressing cells with very high redding efficiency (Supplementary Fig. 4). Thus, intracellular localization of EGFP strongly affects its redding, possibly due to known differences in redox potential and the composition and quantities of redox-active molecules in different cell compartments18.

To test redding in vivo, we selected a button polyp, Zoanthus sp., whose fluorescent proteins are well characterized2,1921. A specimen with bright green tentacles (Fig. 2e) was analyzed by confocal microscopy. We found that cells with green fluorescence can be readily converted into a red state by brief irradiation with an intense 488 nm laser line (Fig. 2f). We believe that this photoconversion represents an oxidative redding of zFP506 in coral tissues. However, the presence of some still unidentified photoconvertible fluorescent molecules that colocalize with zFP506 cannot be excluded.

Photoconversion described in the present work (oxidative redding) is clearly distinguishable from previously described green-to-red photoconversions of GFP variants under anaerobic conditions10,11 (anaerobic redding). First, in contrast to anaerobic green-to-red photoconversion, during oxidative redding the red state is formed and is stable under normal aerobic conditions. Also, the red forms possess different shapes and maxima of spectra, especially for excitation (525 and 575 nm for anaerobic and oxidative redding, respectively).

In the literature we found two classic models clearly resembling anaerobic GFP redding: a photoreduction of chlorophylls under anaerobic conditions22,23, and an anaerobic photoconversion of flavoproteins24 resulting in accumulation of stable semiquinoid radical forms that usually have red-shifted absorption spectra. Similarly, we propose that anaerobic GFP redding represents a photoreduction with formation of a stable radical state of GFP chromophore. This hypothesis explains the observed sensitivity of the photoconverted red GFP state to molecular oxygen. If so, GFPs can undergo both photoreduction (anaerobic redding) and photooxidation (oxidative redding) depending on external conditions, i.e., the presence of oxygen and appropriate electron donors or acceptors.

Biological functions of fluorescent proteins remain incompletely understood25. The data presented here suggest a novel GFP function: induction of a light-driven electron transfer. Such reactions may be involved in diverse cellular processes ranging from production of reductive equivalents (e.g, FADH2 or NADH) to general light sensing, if appropriate partners are connected with GFPs. Importantly, oxidative redding represents a common feature of many diverse GFPs. In fact, this is perhaps the most common type of photoconversion in GFP-like proteins. Thus, light-induced electron transfer may be considered a potential “primary” function of the GFP ancestor, whereas other “secondary” GFP functions, such as participation in bioluminescence and protection from sunlight, evolved later.

In addition, oxidative redding sheds light on the problem of multiple independent origins of red fluorescent proteins during evolution of the Anthozoa species, which is a striking example of convergent evolution at the molecular level3,25. From our data it is clear that various GFPs are “accustomed” to light-induced oxidation into a red fluorescent state. Thus, it is reasonable to propose that some point mutations can further develop this ability toward light-independent maturation of the red chromophore.

In summary, the present work changes our general view of GFPs as passive light absorbers/emitters. Rather, an active role of GFPs in light-induced electron transfer should be kept in mind when one considers the biology of GFPs and potential applications. A number of novel practical applications of GFP can be envisioned, such as redox monitoring in different cell compartments or of particular proteins, monitoring proximity to an electron acceptor, and light-induced manipulation of redox processes in living cells.

Supplementary Material

ACKNOWLEDGEMENTS

This work was supported by the MCB program of the Russian Academy of Sciences, Russian Federal Agency for Science and Innovations (grant 02.513.12.3013), HHMI grant 55005618, EC FP6 Integrated Project LSHG-CT-2003-503259, and the program “State Support of the Leading Scientific Schools” (NS-2395.2008.4). D.M.C. and K.A.L. are supported by the Russian Science Support Foundation and grants from the President of the Russian Federation MK-6119.2008.4 and MD-5815.2008.4. V.V.V. was supported by grant GM073913 from the National Institutes of Health (USA).

Footnotes

COMPETING INTERESTS STATEMENT

The authors declare that they have no competing financial interests.

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