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Simultaneous alignment of short reads against multiple genomes
Korbinian Schneeberger, Jörg Hagmann, Stephan Ossowski, Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel
Genome Biol. 2009; 10(9): R98. Published online 2009 September 17. doi: 10.1186/gb-2009-10-9-r98
PMCID:
PMC2768987
Abstract Full Text PDF–247K Supplementary Material

Is Cited by the Following 14 Articles in this Archive:

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics
Detlef Weigel
Plant Physiol. 2012 January; 158(1): 2–22. Published online 2011 December 6. doi: 10.1104/pp.111.189845
PMCID:
PMC3252104
Full Text PDF–974K
LOCAS – A Low Coverage Assembly Tool for Resequencing Projects
Juliane D. Klein, Stephan Ossowski, Korbinian Schneeberger, Detlef Weigel, Daniel H. Huson
PLoS One. 2011; 6(8): e23455. Published online 2011 August 15. doi: 10.1371/journal.pone.0023455
PMCID:
PMC3156226
Abstract Full Text PDF–395K Supplementary Material
Reference-guided assembly of four diverse Arabidopsis thaliana genomes
Korbinian Schneeberger, Stephan Ossowski, Felix Ott, Juliane D. Klein, Xi Wang, Christa Lanz, Lisa M. Smith, Jun Cao, Joffrey Fitz, Norman Warthmann, Stefan R. Henz, Daniel H. Huson, Detlef Weigel
Proc Natl Acad Sci U S A. 2011 June 21; 108(25): 10249–10254. Published online 2011 June 6. doi: 10.1073/pnas.1107739108
PMCID:
PMC3121819
Abstract Full Text PDF–203K Supplementary Material
Prediction of Regulatory Interactions from Genome Sequences Using a Biophysical Model for the Arabidopsis LEAFY Transcription Factor
Edwige Moyroud, Eugenio Gómez Minguet, Felix Ott, Levi Yant, David Posé, Marie Monniaux, Sandrine Blanchet, Olivier Bastien, Emmanuel Thévenon, Detlef Weigel, Markus Schmid, François Parcy
Plant Cell. 2011 April; 23(4): 1293–1306. Published online 2011 April 22. doi: 10.1105/tpc.111.083329
PMCID:
PMC3101549
Abstract Full Text PDF–1014K
Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology
Stephanie Hammond, Jeffrey C Swanberg, Mihailo Kaplarevic, Kelvin H Lee
BMC Genomics. 2011; 12: 67. Published online 2011 January 26. doi: 10.1186/1471-2164-12-67
PMCID:
PMC3038171
Abstract Full Text PDF–389K
The case for resequencing studies of Arabidopsis thaliana accessions: mining the dark matter of natural genetic variation
Luca Santuari, Christian S Hardtke
F1000 Biol Rep. 2010; 2: 85. Published online 2010 December 8. doi: 10.3410/B2-85
PMCID:
PMC3026625
Abstract Full Text PDF–324K
Directed adenovirus evolution using engineered mutator viral polymerases
Taco G. Uil, Jort Vellinga, Jeroen de Vrij, Sanne K. van den Hengel, Martijn J. W. E. Rabelink, Steve J. Cramer, Julia J. M. Eekels, Yavuz Ariyurek, Michiel van Galen, Rob C. Hoeben
Nucleic Acids Res. 2011 March; 39(5): e30. Published online 2010 December 7. doi: 10.1093/nar/gkq1258
PMCID:
PMC3061072
Abstract Full Text PDF–8.6M Supplementary Material
Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2
Levi Yant, Johannes Mathieu, Thanh Theresa Dinh, Felix Ott, Christa Lanz, Heike Wollmann, Xuemei Chen, Markus Schmid
Plant Cell. 2010 July; 22(7): 2156–2170. Published online 2010 July 30. doi: 10.1105/tpc.110.075606
PMCID:
PMC2929098
Abstract Full Text PDF–901K Supplementary Material
Caesium and strontium accumulation in shoots of Arabidopsis thaliana: genetic and physiological aspects
Ulrike Kanter, Andreas Hauser, Bernhard Michalke, Stephan Dräxl, Anton R. Schäffner
J Exp Bot. 2010 September; 61(14): 3995–4009. Published online 2010 July 11. doi: 10.1093/jxb/erq213
PMCID:
PMC2935873
Abstract Full Text PDF–822K Supplementary Material
rQuant.web: a tool for RNA-Seq-based transcript quantitation
Regina Bohnert, Gunnar Rätsch
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W348–W351. Published online 2010 June 15. doi: 10.1093/nar/gkq448
PMCID:
PMC2896134
Abstract Full Text PDF–1.1M
Gene Transposition Causing Natural Variation for Growth in Arabidopsis thaliana
Daniela Vlad, Fabrice Rappaport, Matthieu Simon, Olivier Loudet
PLoS Genet. 2010 May; 6(5): e1000945. Published online 2010 May 13. doi: 10.1371/journal.pgen.1000945
PMCID:
PMC2869320
Abstract Full Text PDF–574K Supplementary Material
A survey of sequence alignment algorithms for next-generation sequencing
Heng Li, Nils Homer
Brief Bioinform. 2010 September; 11(5): 473–483. Published online 2010 May 11. doi: 10.1093/bib/bbq015
PMCID:
PMC2943993
Abstract Full Text PDF–334K
Identification of a Spontaneous Frame Shift Mutation in a Nonreference Arabidopsis Accession Using Whole Genome Sequencing
Roosa A.E. Laitinen, Korbinian Schneeberger, Noémie S. Jelly, Stephan Ossowski, Detlef Weigel
Plant Physiol. 2010 June; 153(2): 652–654. Published online 2010 April 13. doi: 10.1104/pp.110.156448
PMCID:
PMC2879766
Full Text PDF–572K
Assembly Algorithms for Next-Generation Sequencing Data
Jason R. Miller, Sergey Koren, Granger Sutton
Genomics. Author manuscript; available in PMC 2011 June 1.
Published in final edited form as: Genomics. 2010 June; 95(6): 315–327. Published online 2010 March 6. doi: 10.1016/j.ygeno.2010.03.001
PMCID:
PMC2874646
Abstract Full Text PDF–367K
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