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High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans
Arun K Ramani, Andrew C Nelson, Philipp Kapranov, Ian Bell, Thomas R Gingeras, Andrew G Fraser
Genome Biol. 2009; 10(9): R101. Published online 2009 September 24. doi: 10.1186/gb-2009-10-9-r101
PMCID:
PMC2768976
Abstract Full Text PDF–2.8M Supplementary Material

Is Cited by the Following 10 Articles in this Archive:

A Role for Nonsense-Mediated mRNA Decay in Plants: Pathogen Responses Are Induced in Arabidopsis thaliana NMD Mutants
Samantha Rayson, Luis Arciga-Reyes, Lucie Wootton, Marta De Torres Zabala, William Truman, Neil Graham, Murray Grant, Brendan Davies
PLoS One. 2012; 7(2): e31917. Published online 2012 February 22. doi: 10.1371/journal.pone.0031917
PMCID:
PMC3284524
Abstract Full Text PDF–1.2M Supplementary Material
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
Maria Kalyna, Craig G. Simpson, Naeem H. Syed, Dominika Lewandowska, Yamile Marquez, Branislav Kusenda, Jacqueline Marshall, John Fuller, Linda Cardle, Jim McNicol, Huy Q. Dinh, Andrea Barta, John W. S. Brown
Nucleic Acids Res. 2012 March; 40(6): 2454–2469. Published online 2011 November 29. doi: 10.1093/nar/gkr932
PMCID:
PMC3315328
Abstract Full Text PDF–647K Supplementary Material
The role of the 5′–3′ exoribonuclease XRNA in transcriptome-wide mRNA degradation
Theresa Manful, Abeer Fadda, Christine Clayton
RNA. 2011 November; 17(11): 2039–2047. doi: 10.1261/rna.2837311
PMCID:
PMC3198596
Free in PMC on 2012/11/01
Is There a Classical Nonsense-Mediated Decay Pathway in Trypanosomes?
Praveen Delhi, Rafael Queiroz, Diana Inchaustegui, Mark Carrington, Christine Clayton
PLoS One. 2011; 6(9): e25112. Published online 2011 September 21. doi: 10.1371/journal.pone.0025112
PMCID:
PMC3177853
Abstract Full Text PDF–1.0M Supplementary Material
The Genomic Signature of Splicing-Coupled Selection Differs between Long and Short Introns
Ashley Farlow, Marlies Dolezal, Liushuai Hua, Christian Schlötterer
Mol Biol Evol. 2012 January; 29(1): 21–24. Published online 2011 August 30. doi: 10.1093/molbev/msr201
PMCID:
PMC3245539
Abstract Full Text PDF–418K Supplementary Material
Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner
Paul Avery, Marta Vicente-Crespo, Deepthy Francis, Oxana Nashchekina, Claudio R. Alonso, Isabel M. Palacios
RNA. 2011 April; 17(4): 624–638. doi: 10.1261/rna.2404211
PMCID:
PMC3062174
Abstract Full Text PDF–1024K
Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome
Ayelet T. Lamm, Michael R. Stadler, Huibin Zhang, Jonathan I. Gent, Andrew Z. Fire
Genome Res. 2011 February; 21(2): 265–275. doi: 10.1101/gr.108845.110
PMCID:
PMC3032930
Abstract Full Text PDF–854K
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
Arun K. Ramani, John A. Calarco, Qun Pan, Sepand Mavandadi, Ying Wang, Andrew C. Nelson, Leo J. Lee, Quaid Morris, Benjamin J. Blencowe, Mei Zhen, Andrew G. Fraser
Genome Res. 2011 February; 21(2): 342–348. doi: 10.1101/gr.114645.110
PMCID:
PMC3032936
Abstract Full Text PDF–759K
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Nicholas J McGlincy, Lit-Yeen Tan, Nicodeme Paul, Mihaela Zavolan, Kathryn S Lilley, Christopher WJ Smith
BMC Genomics. 2010; 11: 565. Published online 2010 October 14. doi: 10.1186/1471-2164-11-565
PMCID:
PMC3091714
Abstract Full Text PDF–1.0M Supplementary Material
Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay
David R. McIlwain, Qun Pan, Patrick T. Reilly, Andrew J. Elia, Susan McCracken, Andrew C. Wakeham, Annick Itie-Youten, Benjamin J. Blencowe, Tak W. Mak
Proc Natl Acad Sci U S A. 2010 July 6; 107(27): 12186–12191. Published online 2010 June 21. doi: 10.1073/pnas.1007336107
PMCID:
PMC2901484
Abstract Full Text PDF–875K Supplementary Material
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