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The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum
Eugene V Koonin, Yuri I Wolf
Biol Direct. 2009; 4: 33. Published online 2009 September 29. doi: 10.1186/1745-6150-4-33
PMCID:
PMC2761301
Abstract Full Text PDF–647K

Is Cited by the Following 13 Articles in this Archive:

Statistics and Truth in Phylogenomics
Sudhir Kumar, Alan J. Filipski, Fabia U. Battistuzzi, Sergei L. Kosakovsky Pond, Koichiro Tamura
Mol Biol Evol. 2012 February; 29(2): 457–472. Published online 2011 August 26. doi: 10.1093/molbev/msr202
PMCID:
PMC3258035
Free in PMC on 2013/02/01
Lateral Transfer of Genes and Gene Fragments in Staphylococcus Extends beyond Mobile Elements
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
J Bacteriol. 2011 August; 193(15): 3964–3977. doi: 10.1128/JB.01524-10
PMCID:
PMC3147504
Abstract Full Text PDF–1.4M Supplementary Material
From the scala naturae to the symbiogenetic and dynamic tree of life
Ulrich Kutschera
Biol Direct. 2011; 6: 33. Published online 2011 June 30. doi: 10.1186/1745-6150-6-33
PMCID:
PMC3154191
Abstract Full Text PDF–3.0M
How stands the Tree of Life a century and a half after The Origin?
Maureen A O'Malley, Eugene V Koonin
Biol Direct. 2011; 6: 32. Published online 2011 June 30. doi: 10.1186/1745-6150-6-32
PMCID:
PMC3158114
Abstract Full Text PDF–521K
Early evolution without a tree of life
William F Martin
Biol Direct. 2011; 6: 36. Published online 2011 June 30. doi: 10.1186/1745-6150-6-36
PMCID:
PMC3158116
Abstract Full Text PDF–2.2M
Computational methods for Gene Orthology inference
David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin
Brief Bioinform. 2011 September; 12(5): 379–391. Published online 2011 June 17. doi: 10.1093/bib/bbr030
PMCID:
PMC3178053
Free in PMC on 2012/09/01
Population genetics of the cytoplasm and the units of selection on mitochondrial DNA in Drosophila melanogaster
David M. Rand
Genetica. Author manuscript; available in PMC 2011 August 4.
Published in final edited form as: Genetica. 2011 May; 139(5): 685–697. Published online 2011 May 3. doi: 10.1007/s10709-011-9576-y
PMCID:
PMC3149803
Abstract Full Text PDF–865K Supplementary Material
Origin of the fittest: link between emergent variation and evolutionary change as a critical question in evolutionary biology
Alexander V. Badyaev
Proc Biol Sci. 2011 July 7; 278(1714): 1921–1929. Published online 2011 April 13. doi: 10.1098/rspb.2011.0548
PMCID:
PMC3107662
Free in PMC on 2012/07/07
Evolutionarily Conserved Orthologous Families in Phages Are Relatively Rare in Their Prokaryotic Hosts
David M. Kristensen, Xixu Cai, Arcady Mushegian
J Bacteriol. 2011 April; 193(8): 1806–1814. doi: 10.1128/JB.01311-10
PMCID:
PMC3133016
Abstract Full Text PDF–614K
The Tree and Net Components of Prokaryote Evolution
Pere Puigbò, Yuri I. Wolf, Eugene V. Koonin
Genome Biol Evol. 2010; 2: 745–756. Published online 2010 October 1. doi: 10.1093/gbe/evq062
PMCID:
PMC2997564
Abstract Full Text PDF–1.7M
Save the tree of life or get lost in the woods
Ruben E Valas, Philip E Bourne
Biol Direct. 2010; 5: 44. Published online 2010 July 1. doi: 10.1186/1745-6150-5-44
PMCID:
PMC2910001
Abstract Full Text PDF–1000K Supplementary Material
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
Sarah Schaack, Clément Gilbert, Cédric Feschotte
Trends Ecol Evol. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Trends Ecol Evol. 2010 September; 25(9): 537–546. Published online 2010 June 28. doi: 10.1016/j.tree.2010.06.001
PMCID:
PMC2940939
Abstract Full Text PDF–617K Supplementary Material
Is evolution Darwinian or/and Lamarckian?
Eugene V Koonin, Yuri I Wolf
Biol Direct. 2009; 4: 42. Published online 2009 November 11. doi: 10.1186/1745-6150-4-42
PMCID:
PMC2781790
Abstract Full Text PDF–387K
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