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Tools for simulating evolution of aligned genomic regions with integrated parameter estimation
Avinash Varadarajan, Robert K Bradley, Ian H Holmes
Genome Biol. 2008; 9(10): R147. Published online 2008 October 8. doi: 10.1186/gb-2008-9-10-r147
PMCID:
PMC2760874
Abstract Full Text PDF–425K
 Is Cited by the Following 5 Articles in this Archive:
Cactus: Algorithms for genome multiple sequence alignment
Benedict Paten, Dent Earl, Ngan Nguyen, Mark Diekhans, Daniel Zerbino, David Haussler
Genome Res. 2011 September; 21(9): 1512–1528. doi: 10.1101/gr.123356.111
PMCID:
PMC3166836
Abstract Full Text PDF–1.7M
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Botond Sipos, Tim Massingham, Gregory E Jordan, Nick Goldman
BMC Bioinformatics. 2011; 12: 104. Published online 2011 April 19. doi: 10.1186/1471-2105-12-104
PMCID:
PMC3102636
Abstract Full Text PDF–3.7M Supplementary Material
Simulation of Genes and Genomes Forward in Time
Antonio Carvajal-Rodríguez
Curr Genomics. 2010 March; 11(1): 58–61. doi: 10.2174/138920210790218007
PMCID:
PMC2851118
Abstract Full Text PDF–73K
Biological Sequence Simulation for Testing Complex Evolutionary Hypotheses: indel-Seq-Gen Version 2.0
Cory L. Strope, Kevin Abel, Stephen D. Scott, Etsuko N. Moriyama
Mol Biol Evol. 2009 November; 26(11): 2581–2593. Published online 2009 August 3. doi: 10.1093/molbev/msp174
PMCID:
PMC2760465
Abstract Full Text PDF–1.0M Supplementary Material
INDELible: A Flexible Simulator of Biological Sequence Evolution
William Fletcher, Ziheng Yang
Mol Biol Evol. 2009 August; 26(8): 1879–1888. Published online 2009 May 7. doi: 10.1093/molbev/msp098
PMCID:
PMC2712615
Abstract Full Text PDF–262K
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