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Copyright Mangeat et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. HIV-1 Vpu Neutralizes the Antiviral Factor Tetherin/BST-2 by Binding It and Directing Its Beta-TrCP2-Dependent Degradation 1Department of Dermatology and Venereology, University Hospitals and Medical School of Geneva, University of Geneva, Switzerland 2Department of Microbiology and Molecular Medicine, University Hospitals and Medical School of Geneva, University of Geneva, Switzerland Thomas J. Hope, Editor Northwestern University, United States of America * E-mail: vincent.piguet/at/unige.ch Conceived and designed the experiments: BM JL VP. Performed the experiments: BM GGH ML MZ. Analyzed the data: BM GGH ML JL VP. Wrote the paper: BM VP. Received April 13, 2009; Accepted August 11, 2009. This article has been cited by other articles in PMC.Abstract Host cells impose a broad range of obstacles to the replication of retroviruses. Tetherin (also known as CD317, BST-2 or HM1.24) impedes viral release by retaining newly budded HIV-1 virions on the surface of cells. HIV-1 Vpu efficiently counteracts this restriction. Here, we show that HIV-1 Vpu induces the depletion of tetherin from cells. We demonstrate that this phenomenon correlates with the ability of Vpu to counteract the antiviral activity of both overexpressed and interferon-induced endogenous tetherin. In addition, we show that Vpu co-immunoprecipitates with tetherin and β-TrCP in a tri-molecular complex. This interaction leads to Vpu-mediated proteasomal degradation of tetherin in a β-TrCP2-dependent manner. Accordingly, in conditions where Vpu-β-TrCP2-tetherin interplay was not operative, including cells stably knocked down for β-TrCP2 expression or cells expressing a dominant negative form of β-TrCP, the ability of Vpu to antagonize the antiviral activity of tetherin was severely impaired. Nevertheless, tetherin degradation did not account for the totality of Vpu-mediated counteraction against the antiviral factor, as binding of Vpu to tetherin was sufficient for a partial relief of the restriction. Finally, we show that the mechanism used by Vpu to induce tetherin depletion implicates the cellular ER-associated degradation (ERAD) pathway, which mediates the dislocation of ER membrane proteins into the cytosol for subsequent proteasomal degradation. In conclusion, we show that Vpu interacts with tetherin to direct its β-TrCP2-dependent proteasomal degradation, thereby alleviating the blockade to the release of infectious virions. Identification of tetherin binding to Vpu provides a potential novel target for the development of drugs aimed at inhibiting HIV-1 replication. Author Summary To efficiently replicate in cells, HIV-1 needs to inactivate a number of intracellular host defenses. One such antiviral mechanism is provided by the newly identified tetherin protein. This factor blocks viral production by impeding the release of newly generated HIV-1 particles from the surface of cells. HIV-1 possesses the Vpu protein, which efficiently counteracts this blockade. Here we reveal that HIV-1 Vpu interacts with tetherin and leads to its depletion from cells, possibly through multiple mechanisms, including proteasomal degradation. In order to eliminate tetherin, Vpu hijacks a cellular component, named β-TrCP2, which is normally used by human cells to induce degradation of certain proteins. Identification of tetherin binding to Vpu provides a potential novel target for the development of drugs aimed at inhibiting HIV-1 replication. Introduction In order to successfully infect human cells, HIV-1 has to neutralize cellular restriction factors that impede its replication at multiple steps. HIV-1 Vpu serves this goal by counteracting a blockade imposed by the newly identified protein tetherin [1]–[4]. Under basal conditions, tetherin is expressed in B and T cells, plasmacytoid dendritic cells and myeloid cells [5]–[7]. In addition, tetherin expression is strongly upregulated in many cell types by type-I interferon (IFN), a situation typically encountered in viral infections [5]. Tetherin is a heavily glycosylated type-II transmembrane protein with an unusual topology, which is otherwise only found in mammals in a minor but pathologically important topological variant of the prion protein [8],[9]. Tetherin is indeed linked to membranes both by its one-pass transmembrane domain and by a C-ter GPI anchor. This anti-viral factor is mostly intracellular, but it is also localized at the cell surface in lipid rafts, from where it is continually recycled to the trans-Golgi network [8],[10]. In cells expressing tetherin, HIV-1 viruses deleted for the Vpu gene can bud normally but remain tethered to the cell surface through a protein bond [1],[9]. The mechanistic details of this phenomenon remain to be clarified. A hypothesis, that still awaits confirmation, is that tetherin itself forms the protein tether between the cell surface and the virion owing to its ability to form stable dimers [11]. The affected virions are then endocytosed and probably degraded in lysosomes [1]. In addition to inhibiting HIV-1, tetherin also blocks the replication of numerous retroviruses, as well as other non-related enveloped viruses [12]–[14]. The importance of this restriction in the cellular antiviral arsenal is underscored by the apparent positive selection that tetherin undergoes, which is the hallmark of an ongoing molecular fight with pathogens [15]. Vpu is a transmembrane protein which removes the HIV-1 CD4 receptor from the ER biosynthetic pathway [9]. This is thought to liberate the HIV-1 env glycoprotein from unwanted premature interactions with its receptor. For that task, Vpu bridges CD4 to β-TrCP [16]. β-TrCP (actually representing the two homologues β-TrCP1 and β-TrCP2) is a substrate recognition unit of the SCF (Skp1/Cullin/F-box protein) E3 ubiquitin ligase that provides specificity to this machinery by binding to target proteins harboring a distinct motif (DSGXXS, where both serines are phosphorylated), thereby inducing their ubiquitination and subsequent proteasomal degradation [17],[18]. Vpu possesses a β-TrCP target motif, where the cytosolic serines S52 and S56 are constitutively phosphorylated, which allows efficient recruitment of β-TrCP [19]. Vpu itself escapes degradation by unclear means [16], but instead induces the degradation of the CD4 molecules to which it associates. Of note, the mechanistic details of this action of Vpu are only partly understood, since a direct ubiquitination of CD4 in presence of Vpu is not yet demonstrated [16],[20]. Besides that, Vpu-induced CD4 degradation requires a functional ER-associated degradation pathway (ERAD), which mediates the dislocation of proteins targeted for degradation from ER membranes [21]. Although it had been previously shown that Vpu downmodulates tetherin level from the cell surface [3],[22], the mechanistic details have just begun to be unraveled. It was recently shown that Vpu targets tetherin for proteasomal and/or lysosomal degradation, through a β-TrCP-dependent mechanism [23],[24]. Here we confirm that Vpu leads to a depletion of tetherin from cells. We further show that Vpu performs this action by interacting with tetherin in a ternary complex that also comprises β-TrCP. Importantly, we found this depletion to be functionally relevant since it is required for the efficient counteraction of tetherin-mediated restriction, both in overexpression settings and upon IFN-α-induced endogenous tetherin expression. By generating several cell lines stably knocked-down for β-TrCP1 or β-TrCP2 expression, we further show that β-TrCP2, but not β-TrCP1, is required for this depletion. Furthermore, we confirm that this reduction of tetherin level occurs at least for a large part through the proteasome. The depletion is indeed blocked by a proteasome inhibitor, as well as the K48R mutant of ubiquitin, which allows monoubiquitination of targeted proteins but not the subsequent elongation of the polyubiquitin chains required for proteasomal degradation. In addition, our data are also compatible with a model where some fraction of the Vpu-induced tetherin depletion is due to a β-TrCP2-dependent lysosomal degradation. However, Vpu-induced tetherin degradation explained only a part of its activity against the antiviral factor. Binding of Vpu to tetherin was indeed sufficient for a partial rescue of viral release, even in absence of tetherin degradation. Finally, we show that the mechanism underlying the degradation of tetherin uses a cellular machinery at least partly overlapping with the cellular ERAD pathway. Results Vpu diminishes cellular levels of human tetherin In order to investigate the mechanistic details of Vpu action against tetherin, we generated constructs of human and mouse tetherin tagged with HA at their cytosolic N-terminus. We expressed these in 293T cells, which do not express endogenous tetherin [2]. In the absence of Vpu, both constructs potently blocked the release of HIV-1 virions as scored by titrating the viral output (Fig. 1A
In order to strengthen these observations, we asked whether the Vpu-induced tetherin depletion quantitatively correlated with its ability to rescue viral release. Increasing the dose of Vpu, as expected, proportionally decreased the level of tetherin, which paralleled the decrease in the antiviral activity of the cellular factor (Fig. 2A
Vpu requires its β-TrCP interaction motif to deplete IFN-induced tetherin, and to counteract its antiviral action We wondered whether Vpu depletes tetherin via a mechanism related to its downregulation of CD4. We therefore first asked whether Vpu required an intact β-TrCP interaction motif. For that purpose, we generated a Vpu mutated for one (S52A) or both (S52A and S56A, thereafter coined Vpu 2S/A) of the serines crucial for β-TrCP recruitment [16],[19], and monitored the ability of these constructs to deplete tetherin from transfected 293T cells. Strikingly, both mutants were unable to downregulate tetherin expression (Fig. 3A
We next assessed the importance of β-TrCP recruitment motif of Vpu for tetherin counteraction in cells expressing endogenously the antiviral restriction factor, as opposed to an overexpressed form of the protein. For that purpose, we treated 293T with IFN-α for 8 hours, which potently induced expression of endogenous tetherin both at mRNA and protein levels, as previously reported [2] (Fig. 4A and 4B
Vpu requires β-TrCP2 to deplete tetherin from cells and antagonize its antiviral action To confirm the involvement of β-TrCP in the anti-tetherin action of Vpu, we tested the effect on Vpu action of a β-TrCP-ΔF deletion mutant, which was shown to abrogate the degradation of CD4 by Vpu [16]. This construct is a well characterized dominant negative of β-TrCP that cannot be anchored on the SCF E3 ligase since it lacks the so-called F-box domain, which mediates β-TrCP binding to the skp1 adaptor of this machinery [17]. This mutant, derived from a β-TrCP1 clone, has dominant negative activity on both β-TrCP1 and β-TrCP2. Strikingly the concomitant expression of this dominant negative form of β-TrCP (β-TrCP-ΔF) completely abolished Vpu-mediated tetherin degradation (Fig. 5
In order to further analyze the requirement for β-TrCP in Vpu anti-tetherin action, we generated 293T cell lines stably transduced with lentiviral vectors expressing microRNA-adapted shRNA (shRNAmir) specifically targeting β-TrCP1 or β-TrCP2. We obtained one cell line harboring potent β-TrCP1 downregulation (shRNAmir #325), and three cell lines harboring potent β-TrCP2 downregulation (shRNAmir # 187, 190 & 192), as measured by real-time RT-PCR (Fig. 6A
Vpu and β-TrCP co-immunoprecipitate with tetherin In order to analyze whether Vpu could interact in eukaryotic cells with the antiviral factor, we transfected 293T cells with Vpu in the presence or absence of HA-tagged tetherin. Monitoring the lysates from these co-transfections confirmed Vpu-induced depletion of tetherin (Fig. 7
Vpu requires a functional polyubiquitin/proteasome system for efficient tetherin depletion Our results point out towards a model where Vpu bridges tetherin to β-TrCP2, which leads to the depletion of tetherin from cells and, as a consequence, alleviates the restriction imposed by the antiviral factor. In order to define if Vpu-tetherin-β-TrCP2 complexes were targeted to proteasomal degradation, we transfected 293T cells with an HA-tetherin construct in the presence or absence of Vpu. Forty hours later, the cells were either left untreated or treated with the proteasome inhibitor MG132 for 12 hours and then lysed. This revealed that proteasomal inhibition significantly rescued tetherin expression in presence of Vpu (Fig. 8A
A functional ERAD pathway is required for Vpu-induced tetherin degradation The proteasomal degradation of trans-membrane proteins such as tetherin requires that the cell employs a specific machinery. Indeed, such proteins must be dislocated from membranes prior to their entry into the cytosolic proteasome complex [27]. In the ER, this dislocation is mediated by a series of distinct mechanisms, collectively known as the ERAD (ER-associated degradation) pathways. Briefly, the targeted protein is marked for degradation by a mostly unclear mechanism, which can include ubiquitination. The subsequent dislocation from the membrane is performed by a series of protein complexes which all require at some point the mechanical pulling force generated by the p97 ATPase (also known as VCP). The dislocated protein is then targeted to proteasomal degradation by ubiquitination [27]. To address whether the ERAD pathway is required for Vpu-induced tetherin proteasomal degradation, we transfected 293T with a control siRNA or a siRNA pool specific for p97, which led to a 50% downregulation of its mRNA level (data not shown). This relatively low level of downregulation might be due to the constitutively very high expression of p97 [28]. Nevertheless, co-transfection of these cells with a Flag-tetherin plasmid in the absence or presence of Vpu revealed that p97 downregulation partially impaired Vpu-mediated tetherin degradation (Fig. 9A
Discussion It has been known for a long time that HIV-1 deleted for the Vpu gene cannot be released efficiently from specific cell types such as macrophages or T cells [29],[30]. The recent identification of the IFN-α induced restriction factor tetherin provides an explanation for this phenomenon [2],[3]. Tetherin impedes release of newly budded virions and mediates their internalization, probably thereby targeting them for lysosomal degradation. Vpu efficiently counteracts this antiviral activity by a mechanism whose details only begin to be revealed [2],[3]. Indeed, while it had been known from some time that Vpu downmodulates tetherin from the cell surface [3],[22], it was only recently shown that Vpu targets tetherin for proteasomal and/or lysosomal degradation [23],[24]. We confirm here that Vpu expression indeed induces a sharp reduction of tetherin protein levels in cells (Fig. 1 We also showed that efficient Vpu-induced tetherin depletion required a functional proteasomal pathway (Fig. 8 The mechanism underlying tetherin degradation had common characteristics with the cellular ER-associated degradation pathway (ERAD), where ER-associated proteins are dislocated and subsequently degraded by the proteasome in the cytosol (Fig. 9A Importantly, our data also suggest that the Vpu anti-tetherin activity is not fully explained by Vpu-mediated tetherin depletion. Indeed, this phenomenon accounted for a large part but not the integrality of the Vpu anti-tetherin functional effect. In particular, in conditions where degradation was completely abrogated, Vpu still had a residual ability to counteract tetherin antiviral action (Fig. 3B Hijacking of ubiquitin E3 ligases appears to be a common theme for HIV-1 accessory proteins to counteract host cell restriction factors. In addition to Vpu that serves as a bridge between the E3 β-TrCP substrate recognition module and the targeted restriction factor, HIV-1 Vif developed a similar but slightly different strategy, where it directly replaces the substrate recognition module to induce the degradation of the APOBEC3G antiviral protein [53]. More generally, it will be worth investigating the strategies used by other classes of viruses to counteract the broad antiviral action of tetherin. To conclude, we propose that the molecular interplays revealed here pave the way for the development of new therapeutic strategies targeting the Vpu-tetherin interaction in order to thwart HIV-1 replication. Materials and Methods Plasmids, reagents Expression plasmids for untagged tetherin of human and murine origin were obtained from Origene (Rockville, MD). Tetherin was subsequently sub-cloned using standard molecular biology procedures into pCDNA3.1(+) or pEF1 backbones (both from Invitrogen), with either a Flag or HA tag added in frame at their N-terminus. The tetherin mutant harboring lysines to arginines changes in its two cytosolic lysines (K18R and K21R, which we named KcytoR), was engineered with the help of the QuickChange mutagenesis system (Stratagene). Of note, the N-terminal HA-tag appended to this construct does not itself encode for any lysine. The expression plasmid for Vpu, pCDNA-Vphu, encodes a well characterized codon-optimized version of Vpu (made by K. Strebel and S. Bour, obtained through the NIH AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH) [54]. Versions of this plasmid harboring the S52A or S52A/S56A (which we named 2S/A in the core of the text) were made with the help of the QuickChange mutagenesis system (Stratagene). The Vpu-deficient or proficient HIV-1 expression vectors are kind gifts of Didier Trono and are based on the pR9 proviral construct [55]. Wild type β-TrCP1 was expressed from the pCR3-Flag-β-TrCP1 plasmid (a kind gift of Sylvia Rothenberger) [56]. β-TrCP1-ΔF-box was expressed from the pCMV2-FLAG-β-TrCP1-ΔF plasmid (a kind gift or Yinon Ben Neriah) [33]. Wild type β-TrCP1 was expressed from the pCDNA3-β-TrCP2-HA plasmid [57]. HA-tagged wild type and K48R mutant of ubiquitin were expressed from the pRK5 backbone and were obtained from Ted Dawson's lab through Addgene [58]. The K63R version of this ubiquitin construct was engineered with the help of the QuickChange mutagenesis system (Stratagene). The GFP expression plasmid was pEGFP.N1 (Clontech). Bafilomycin A1 (Sigma) was used at a concentration of 50 nM, and MG132 (Sigma) at a concentration of 10 uM. Recombinant human IFN-α was obtained from Sigma. Cells and transfections 293T cells were cultured following usual procedures. The transfection of these cells was performed either following a standard calcium-phosphate-based technique or with the help of the Fugene 6 reagent (Roche), according to manufacturer instructions. For experiments done in the absence of proviral constructs, the molar ratio of transfected Vpu and tetherin plasmids was 2 1, unless otherwise indicated.Viral production and infectivity assay HIV-1 particles were produced by transient transfection of 293T cells with CaCl2 or Fugene (Roche). Unless otherwise indicated, the supernatant of producer cells was collected 36 hours post-transfection. Virion release was scored by monitoring the reverse transcriptase enzymatic activity in the producer cells supernatant. In single-round infectivity assays, viral titer was determined by applying filtered supernatant from producer cells on HeLa-CD4-LTR-LacZ indicator cells [59]. When Vpu and tetherin were co-transfected with a proviral construct, the plasmid molar ratio was 2 2 1, respectively, unless otherwise indicated. When required, statistical analysis of the results were performed with the InStat software (GraphPad).Protein analysis Unless otherwise indicated, cells were lysed with RIPA buffer 36 hours post-transfection. Lysates were pre-cleared (13'000 rpm tabletop spin for 10 minutes), and subjected to standard SDS-PAGE, after protein quantification with the BCA kit (Thermo). Overexpressed tetherin was detected with antibodies against the relevant tag added on its N-terminus. Namely, the HA and Flag tags were detected with the mouse monoclonal antibodies 3F10 (Roche) and M2 (Sigma), respectively. The endogenous tetherin and the Vpu protein were detected with rabbit anti-tetherin and anti-Vpu antibodies, respectively, both made by K. Strebel [52],[60] (obtained through the AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH). All western blots of endogenous or tagged tetherin depict its glycosylated forms in the 28 to 37 kDa range, but not its immature 20 kDa form. Depending on the experiments, the relative intensity of individual tetherin bands in the 28–37 Kd range varies and we always depict the predominant species. PCNA (Oncogene Research Products) and GFP (Miltenyi) antibodies were of mouse origin, while anti-ezrin (Cell Signaling Technology) was raised in rabbits. RIG-I and ubiquitin were detected with the mouse monoclonal antibodies Alme-1 (Alexis Biochemicals) and FK-2 (BioMol International), respectively. Gag p55 and p24 were detected with the mouse monoclonal antibody made by Bruce Chesebro and Kathy Wehrly [61] (obtained through the AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH). Quantifications of tetherin protein levels were performed by densitometry using Photoshop (Adobe), with normalization for loading input by the parallel quantification of a control cellular protein. When required, statistical analysis of the results were performed with the InStat software (GraphPad). Immunoprecipitation Lysates were prepared as described for the western blotting protein analysis. HA-tetherin was immunoprecipitated overnight in PBS, using anti-HA affinity matrix (clone 3F10, Roche Applied Science). The resulting immunoprecipitates were washed three times with RIPA buffer. They were then resuspended in Laemmli sample buffer, followed by western blot analysis. RNA interference To achieve downregulation of the VCP (p97) mRNA, 293T cells were transfected using HiPerFect (Qiagen) with 100 nM of either a siRNA pool specific for this RNA (“siRNA ON-Target plus smart pool”, # L-008727-00, from Dharmacon), or a non-targeting siRNA (“Dharmacon siGenome Non-Targeting siRNA”). Twenty-four hours later, the cells were split into the adequate number of wells, and transfected with the plasmids indicated in the relevant figure. The pGIPZ lentiviral vectors expressing, under the control of a CMV promoter, the shRNAmirs specific for β-TrCP1 or β-TrCP2 were obtained from Open Biosystems. The targeted sequences were: β-TrCP1 shRNAmir #325 (GGCACATAAACTCGTATCTTAA), β-TrCP2 shRNAmir #187 (TGCCAATTATCTGTTTGAAATA), β-TrCP2 shRNAmir #190 (GACATATTAACTCTTACCTGAA) β-TrCP2 shRNAmir #192 (GGCCTACGAGATAATTCTATTA). The production of the lentiviral vector particles serving for the delivery of these shRNAmirs were done according to the manufacturer instruction (which is a standard procedure). The transduced cells were selected with puromycin to generate stable cell lines. Real-time RT-PCR Total RNA was extracted from cells with the help of the RNeasy mini kit (Qiagen), including an on-column DNase treatment step. The integrity of the resulting RNAs was checked with a spectrophotometer. Then, they served as templates for the synthesis of cDNA by the Superscript II reverse transcriptase kit (Invitrogen), using random primers. The cDNAs were quantified by SYBR-green-based real-time PCR using JumpStart SYBR green Taq ReadyMix (Sigma), on a CFX96 cycler (Bio-Rad), with the following primers: β-TrCP1 (sense CCAACATGGGCACATAAACTCG, antisense GCAGCACATAGTGATTTGGCATCC), β-TrCP2 (sense ACGAATGGTACGCACTGATCC, antisense ACTTCACCCGTGTTCACATCC), tetherin (sense CTGCAACCACACTGTGATG, antisense ACGCGTCCTGAAGCTTATG), TBP (sense GCCCGAAACGCCGAATATA, antisense: CGTGGCTCTCTTATCCTCATGA), p97 (sense: TTGCTCCAGACACAGTGATCC, antisense: GCCACCAATGTCATCATACCC). The TBP quantification allowed normalization for the starting amount of RNA. Acknowledgments We thank Florence Leuba for excellent technical help. We thank Sylvia Rothenberger, Yinon Ben-Neriah, Didier Trono and Klaus Strebel for the kind gift of reagents. Footnotes The authors have declared that no competing interests exist. VP was supported by Swiss National Science Foundation grant PP00A3- 114755, by The Human Science Frontier Program and by the Geneva Cancer League. 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