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A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes
Diego Cortez, Patrick Forterre, Simonetta Gribaldo
Genome Biol. 2009; 10(6): R65. Published online 2009 June 16. doi: 10.1186/gb-2009-10-6-r65
PMCID:
PMC2718499
Abstract Full Text PDF–375K Supplementary Material

Is Cited by the Following 15 Articles in this Archive:

High-Density Transcriptional Initiation Signals Underline Genomic Islands in Bacteria
Qianli Huang, Xuanjin Cheng, Man Kit Cheung, Sergey S. Kiselev, Olga N. Ozoline, Hoi Shan Kwan
PLoS One. 2012; 7(3): e33759. Published online 2012 March 20. doi: 10.1371/journal.pone.0033759
PMCID:
PMC3309015
Abstract Full Text PDF–656K Supplementary Material
Purine biosynthesis in archaea: variations on a theme
Anne M Brown, Samantha L Hoopes, Robert H White, Catherine A Sarisky
Biol Direct. 2011; 6: 63. Published online 2011 December 14. doi: 10.1186/1745-6150-6-63
PMCID:
PMC3261824
Abstract Full Text PDF–3.8M Supplementary Material
Provirus Induction in Hyperthermophilic Archaea: Characterization of Aeropyrum pernix Spindle-Shaped Virus 1 and Aeropyrum pernix Ovoid Virus 1
Tomohiro Mochizuki, Yoshihiko Sako, David Prangishvili
J Bacteriol. 2011 October; 193(19): 5412–5419. doi: 10.1128/JB.05101-11
PMCID:
PMC3187419
Abstract Full Text PDF–2.2M Supplementary Material
A quantitative account of genomic island acquisitions in prokaryotes
Tom E Roos, Mark WJ van Passel
BMC Genomics. 2011; 12: 427. Published online 2011 August 24. doi: 10.1186/1471-2164-12-427
PMCID:
PMC3176501
Abstract Full Text PDF–866K Supplementary Material
The mosaicism of plasmids revealed by atypical genes detection and analysis
Emanuele Bosi, Renato Fani, Marco Fondi
BMC Genomics. 2011; 12: 403. Published online 2011 August 8. doi: 10.1186/1471-2164-12-403
PMCID:
PMC3166947
Abstract Full Text PDF–812K Supplementary Material
Evolutionarily Conserved Orthologous Families in Phages Are Relatively Rare in Their Prokaryotic Hosts
David M. Kristensen, Xixu Cai, Arcady Mushegian
J Bacteriol. 2011 April; 193(8): 1806–1814. doi: 10.1128/JB.01311-10
PMCID:
PMC3133016
Abstract Full Text PDF–614K
Gene gain and loss events in Rickettsia and Orientia species
Kalliopi Georgiades, Vicky Merhej, Khalid El Karkouri, Didier Raoult, Pierre Pontarotti
Biol Direct. 2011; 6: 6. Published online 2011 February 8. doi: 10.1186/1745-6150-6-6
PMCID:
PMC3055210
Abstract Full Text PDF–490K Supplementary Material
Towards more robust methods of alien gene detection
Rajeev K. Azad, Jeffrey G. Lawrence
Nucleic Acids Res. 2011 May; 39(9): e56. Published online 2011 February 4. doi: 10.1093/nar/gkr059
PMCID:
PMC3089488
Abstract Full Text PDF–563K Supplementary Material
Ribonucleotide reduction - horizontal transfer of a required function spans all three domains
Daniel Lundin, Simonetta Gribaldo, Eduard Torrents, Britt-Marie Sjöberg, Anthony M Poole
BMC Evol Biol. 2010; 10: 383. Published online 2010 December 10. doi: 10.1186/1471-2148-10-383
PMCID:
PMC3019208
Abstract Full Text PDF–735K Supplementary Material
Genomic and Functional Analyses of Rhodococcus equi Phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7
E. J. Summer, M. Liu, J. J. Gill, M. Grant, T. N. Chan-Cortes, L. Ferguson, C. Janes, K. Lange, M. Bertoli, C. Moore, R. C. Orchard, N. D. Cohen, R. Young
Appl Environ Microbiol. 2011 January; 77(2): 669–683. Published online 2010 November 19. doi: 10.1128/AEM.01952-10
PMCID:
PMC3020559
Abstract Full Text PDF–3.0M
Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics
Luis David Alcaraz, Gabriel Moreno-Hagelsieb, Luis E Eguiarte, Valeria Souza, Luis Herrera-Estrella, Gabriela Olmedo
BMC Genomics. 2010; 11: 332. Published online 2010 May 26. doi: 10.1186/1471-2164-11-332
PMCID:
PMC2890564
Abstract Full Text PDF–1.7M Supplementary Material
Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins
Nicolas Soler, Evelyne Marguet, Diego Cortez, Nicole Desnoues, Jenny Keller, Herman van Tilbeurgh, Guennadi Sezonov, Patrick Forterre
Nucleic Acids Res. 2010 August; 38(15): 5088–5104. Published online 2010 April 19. doi: 10.1093/nar/gkq236
PMCID:
PMC2926602
Abstract Full Text PDF–1.7M Supplementary Material
A Unique Group of Virus-Related, Genome-Integrating Elements Found Solely in the Bacterial Family Thermaceae and the Archaeal Family Halobacteriaceae
Matti Jalasvuori, Alice Pawlowski, Jaana K. H. Bamford
J Bacteriol. 2010 June; 192(12): 3231–3234. Published online 2010 April 16. doi: 10.1128/JB.00124-10
PMCID:
PMC2901701
Abstract Full Text PDF–1.6M Supplementary Material
Composition bias and the origin of ORFan genes
Inbal Yomtovian, Nuttinee Teerakulkittipong, Byungkook Lee, John Moult, Ron Unger
Bioinformatics. 2010 April 15; 26(8): 996–999. Published online 2010 March 15. doi: 10.1093/bioinformatics/btq093
PMCID:
PMC2853687
Abstract Full Text PDF–430K Supplementary Material
Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity
Natalya Yutin, Eugene V Koonin
Biol Direct. 2009; 4: 51. Published online 2009 December 18. doi: 10.1186/1745-6150-4-51
PMCID:
PMC2806865
Abstract Full Text PDF–399K Supplementary Material
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