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A novel and universal method for microRNA RT-qPCR data normalization
Pieter Mestdagh, Pieter Van Vlierberghe, An De Weer, Daniel Muth, Frank Westermann, Frank Speleman, Jo Vandesompele
Genome Biol. 2009; 10(6): R64. Published online 2009 June 16. doi: 10.1186/gb-2009-10-6-r64
PMCID:
PMC2718498
Abstract Full Text PDF–292K Supplementary Material
 Is Cited by the Following 25 Articles in this Archive:
A novel mean-centering method for normalizing microRNA expression from high-throughput RT-qPCR data
Dennis Wylie, Jeffrey Shelton, Ashish Choudhary, Alex T Adai
BMC Res Notes. 2011; 4: 555. Published online 2011 December 21. doi: 10.1186/1756-0500-4-555
PMCID:
PMC3267743
Abstract Full Text PDF–323K Supplementary Material
The Murine Caecal MicroRNA Signature Depends on the Presence of the Endogenous Microbiota
Natasha Singh, Elize A. Shirdel, Levi Waldron, Regan-Heng Zhang, Igor Jurisica, Elena M. Comelli
Int J Biol Sci. 2012; 8(2): 171–186. Published online 2011 December 19.
PMCID:
PMC3248702
Abstract Full Text PDF–735K Supplementary Material
Selection and Validation of Reference Genes for miRNA Expression Studies during Porcine Pregnancy
Jocelyn M. Wessels, Andrew K. Edwards, Candace Zettler, Chandrakant Tayade
PLoS One. 2011; 6(12): e28940. Published online 2011 December 12. doi: 10.1371/journal.pone.0028940
PMCID:
PMC3236229
Abstract Full Text PDF–443K
miRNA Expression Profiling of the Murine TH-MYCN Neuroblastoma Model Reveals Similarities with Human Tumors and Identifies Novel Candidate MiRNAs
Marta Terrile, Kenneth Bryan, Lynsey Vaughan, Albert Hallsworth, Hannah Webber, Louis Chesler, Raymond L. Stallings
PLoS One. 2011; 6(12): e28356. Published online 2011 December 2. doi: 10.1371/journal.pone.0028356
PMCID:
PMC3229581
Abstract Full Text PDF–804K Supplementary Material
Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection
Xinxia Peng, Lisa Gralinski, Martin T. Ferris, Matthew B. Frieman, Matthew J. Thomas, Sean Proll, Marcus J. Korth, Jennifer R. Tisoncik, Mark Heise, Shujun Luo, Gary P. Schroth, Terrence M. Tumpey, Chengjun Li, Yoshihiro Kawaoka, Ralph S. Baric, Michael G. Katze
mBio. 2011 Nov-Dec; 2(6): e00198-11. Published online 2011 November 15. doi: 10.1128/mBio.00198-11
PMCID:
PMC3221602
Abstract Full Text PDF–1.5M Supplementary Material
The microRNA body map: dissecting microRNA function through integrative genomics
Pieter Mestdagh, Steve Lefever, Filip Pattyn, Dana Ridzon, Erik Fredlund, Annelies Fieuw, Maté Ongenaert, Joëlle Vermeulen, Anne De Paepe, Linda Wong, Frank Speleman, Caifu Chen, Jo Vandesompele
Nucleic Acids Res. 2011 November; 39(20): e136. Published online 2011 August 10. doi: 10.1093/nar/gkr646
PMCID:
PMC3203610
Abstract Full Text PDF–3.1M Supplementary Material
High Throughput MicroRNA Profiling: Optimized Multiplex qRT-PCR at Nanoliter Scale on the Fluidigm Dynamic ArrayTM IFCs
Felix Moltzahn, Nathan Hunkapiller, Alain A. Mir, Tal Imbar, Robert Blelloch
J Vis Exp. 2011; (54): 2552. Published online 2011 August 3. doi: 10.3791/2552
PMCID:
PMC3211115
Abstract Full Text PDF–1.0M
NORMA-Gene: A simple and robust method for qPCR normalization based on target gene data
Lars-Henrik Heckmann, Peter B Sørensen, Paul Henning Krogh, Jesper G Sørensen
BMC Bioinformatics. 2011; 12: 250. Published online 2011 June 21. doi: 10.1186/1471-2105-12-250
PMCID:
PMC3223928
Abstract Full Text PDF–306K Supplementary Material
MicroRNA analysis of microdissected normal squamous esophageal epithelium and tumor cells
Liang Zhu, Wusheng Yan, Jaime Rodriguez-Canales, Alex M Rosenberg, Nan Hu, Alisa M Goldstein, Philip R Taylor, Heidi S Erickson, Michael R Emmert-Buck, Michael A Tangrea
Am J Cancer Res. 2011; 1(5): 574–584. Published online 2011 April 15.
PMCID:
PMC3142940
Abstract Full Text PDF–4.0M
Dynamic Changes in the MicroRNA Expression Profile Reveal Multiple Regulatory Mechanisms in the Spinal Nerve Ligation Model of Neuropathic Pain
David von Schack, Michael J. Agostino, B. Stuart Murray, Yizheng Li, Padmalatha S. Reddy, Jin Chen, Sung E. Choe, Brian W. Strassle, Christine Li, Brian Bates, Lynn Zhang, Huijuan Hu, Smita Kotnis, Brendan Bingham, Wei Liu, Garth T. Whiteside, Tarek A. Samad, Jeffrey D. Kennedy, Seena K. Ajit
PLoS One. 2011; 6(3): e17670. Published online 2011 March 14. doi: 10.1371/journal.pone.0017670
PMCID:
PMC3056716
Abstract Full Text PDF–523K Supplementary Material
MicroRNA signatures in tissues and plasma predict development and prognosis of computed tomography detected lung cancer
Mattia Boeri, Carla Verri, Davide Conte, Luca Roz, Piergiorgio Modena, Federica Facchinetti, Elisa Calabrò, Carlo M. Croce, Ugo Pastorino, Gabriella Sozzi
Proc Natl Acad Sci U S A. 2011 March 1; 108(9): 3713–3718. Published online 2011 February 7. doi: 10.1073/pnas.1100048108
PMCID:
PMC3048155
Abstract Full Text PDF–818K Supplementary Material
MicroRNAs Profiling in Murine Models of Acute and Chronic Asthma: A Relationship with mRNAs Targets
Nancy Garbacki, Emmanuel Di Valentin, Vân Anh Huynh-Thu, Pierre Geurts, Alexandre Irrthum, Céline Crahay, Thierry Arnould, Christophe Deroanne, Jacques Piette, Didier Cataldo, Alain Colige
PLoS One. 2011; 6(1): e16509. Published online 2011 January 28. doi: 10.1371/journal.pone.0016509
PMCID:
PMC3030602
Abstract Full Text PDF–1.3M Supplementary Material
The miR-17-92 microRNA cluster regulates multiple components of the TGFβ-pathway in neuroblastoma
Pieter Mestdagh, Anna-Karin Boström, Francis Impens, Erik Fredlund, Gert Van Peer, Pasqualino De Antonellis, Kristoffer von Stedingk, Bart Ghesquière, Stefanie Schulte, Michael Dews, Andrei Thomas-Tikhonenko, Johannes H. Schulte, Massimo Zollo, Alexander Schramm, Kris Gevaert, Håkan Axelson, Frank Speleman, Jo Vandesompele
Mol Cell. Author manuscript; available in PMC 2011 December 10.
Published in final edited form as: Mol Cell. 2010 December 10; 40(5): 762–773. doi: 10.1016/j.molcel.2010.11.038
PMCID:
PMC3032380
Abstract Full Text PDF–2.4M Supplementary Material
Suitable reference genes for relative quantification of miRNA expression in prostate cancer
Annika Schaefer, Monika Jung, Kurt Miller, Michael Lein, Glen Kristiansen, Andreas Erbersdobler, Klaus Jung
Exp Mol Med. 2010 November 30; 42(11): 749–758. Published online 2010 October 1. doi: 10.3858/emm.2010.42.11.076
PMCID:
PMC2992854
Abstract Full Text PDF–377K
Microvesicles Derived from Adult Human Bone Marrow and Tissue Specific Mesenchymal Stem Cells Shuttle Selected Pattern of miRNAs
Federica Collino, Maria Chiara Deregibus, Stefania Bruno, Luca Sterpone, Giulia Aghemo, Laura Viltono, Ciro Tetta, Giovanni Camussi
PLoS One. 2010; 5(7): e11803. Published online 2010 July 27. doi: 10.1371/journal.pone.0011803
PMCID:
PMC2910725
Abstract Full Text PDF–1.6M Supplementary Material
Integrated miRNA and mRNA expression profiling of the inflammatory breast cancer subtype
I Van der Auwera, R Limame, P van Dam, P B Vermeulen, L Y Dirix, S J Van Laere
Br J Cancer. 2010 August 10; 103(4): 532–541. Published online 2010 July 27. doi: 10.1038/sj.bjc.6605787
PMCID:
PMC2939785
Abstract Full Text PDF–576K
Fecal microRNAs as novel biomarkers for colon cancer screening
Alexander Link, Francesc Balaguer, Yan Shen, Takeshi Nagasaka, Juan José Lozano, C. Richard Boland, Ajay Goel
Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2011 July 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2010 July; 19(7): 1766–1774. Published online 2010 June 15. doi: 10.1158/1055-9965.EPI-10-0027
PMCID:
PMC2901410
Abstract Full Text PDF–573K Supplementary Material
Determination of genes and microRNAs involved in the resistance to fludarabine in vivo in chronic lymphocytic leukemia
Etienne Moussay, Valérie Palissot, Laurent Vallar, Hélène A Poirel, Thomas Wenner, Victoria El Khoury, Nasséra Aouali, Kris Van Moer, Bernadette Leners, François Bernardin, Arnaud Muller, Pascale Cornillet-Lefebvre, Alain Delmer, Caroline Duhem, Fernand Ries, Eric van Dyck, Guy Berchem
Mol Cancer. 2010; 9: 115. Published online 2010 May 20. doi: 10.1186/1476-4598-9-115
PMCID:
PMC2881880
Abstract Full Text PDF–3.7M Supplementary Material
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
Johannes H. Schulte, Tobias Marschall, Marcel Martin, Philipp Rosenstiel, Pieter Mestdagh, Stefanie Schlierf, Theresa Thor, Jo Vandesompele, Angelika Eggert, Stefan Schreiber, Sven Rahmann, Alexander Schramm
Nucleic Acids Res. 2010 September; 38(17): 5919–5928. Published online 2010 May 13. doi: 10.1093/nar/gkq342
PMCID:
PMC2943620
Abstract Full Text PDF–290K Supplementary Material
MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer
Kah Hoong Chang, Pieter Mestdagh, Jo Vandesompele, Michael J Kerin, Nicola Miller
BMC Cancer. 2010; 10: 173. Published online 2010 April 29. doi: 10.1186/1471-2407-10-173
PMCID:
PMC2873395
Abstract Full Text PDF–1.1M
Chromosomal and miRNA Expression Patterns Reveal Biologically Distinct Subgroups of 11q− Neuroblastoma
Patrick G Buckley, Leah Alcock, Kenneth Bryan, Isabella Bray, Johannes H Schulte, Alexander Schramm, Angelika Eggert, Pieter Mestdagh, Katleen De Preter, Jo Vandesompele, Frank Speleman, Raymond L Stallings
Clin Cancer Res. Author manuscript; available in PMC 2011 June 1.
Published in final edited form as: Clin Cancer Res. 2010 June 1; 16(11): 2971–2978. Published online 2010 April 20. doi: 10.1158/1078-0432.CCR-09-3215
PMCID:
PMC2880207
Abstract Full Text PDF–558K Supplementary Material
miR-9, a MYC/MYCN-activated microRNA, regulates E-cadherin and cancer metastasis
Li Ma, Jennifer Young, Harsha Prabhala, Elizabeth Pan, Pieter Mestdagh, Daniel Muth, Julie Teruya-Feldstein, Ferenc Reinhardt, Tamer T. Onder, Scott Valastyan, Frank Westermann, Frank Speleman, Jo Vandesompele, Robert A. Weinberg
Nat Cell Biol. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Nat Cell Biol. 2010 March; 12(3): 247–256. Published online 2010 February 21. doi: 10.1038/ncb2024
PMCID:
PMC2845545
Abstract Full Text PDF–3.1M Supplementary Material
Application of housekeeping npcRNAs for quantitative expression analysis of human transcriptome by real-time PCR
Chenna R. Galiveti, Timofey S. Rozhdestvensky, Jürgen Brosius, Hans Lehrach, Zoltán Konthur
RNA. 2010 February; 16(2): 450–461. doi: 10.1261/rna.1755810
PMCID:
PMC2811673
Abstract Full Text PDF–277K
MicroRNA Expression and Virulence in Pandemic Influenza Virus-Infected Mice
Yu Li, Eric Y. Chan, Jiangning Li, Chester Ni, Xinxia Peng, Elizabeth Rosenzweig, Terrence M. Tumpey, Michael G. Katze
J Virol. 2010 March; 84(6): 3023–3032. Published online 2010 January 13. doi: 10.1128/JVI.02203-09
PMCID:
PMC2826040
Abstract Full Text PDF–1.0M Supplementary Material
Widespread Dysregulation of MiRNAs by MYCN Amplification and Chromosomal Imbalances in Neuroblastoma: Association of miRNA Expression with Survival
Isabella Bray, Kenneth Bryan, Suzanne Prenter, Patrick G. Buckley, Niamh H. Foley, Derek M. Murphy, Leah Alcock, Pieter Mestdagh, Jo Vandesompele, Frank Speleman, Wendy B. London, Patrick W. McGrady, Desmond G. Higgins, Anne O'Meara, Maureen O'Sullivan, Raymond L. Stallings
PLoS One. 2009; 4(11): e7850. Published online 2009 November 16. doi: 10.1371/journal.pone.0007850
PMCID:
PMC2773120
Abstract Full Text PDF–765K Supplementary Material
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