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Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
Xiaoyu Zhang, Yana V Bernatavichute, Shawn Cokus, Matteo Pellegrini, Steven E Jacobsen
Genome Biol. 2009; 10(6): R62. Published online 2009 June 9. doi: 10.1186/gb-2009-10-6-r62
PMCID:
PMC2718496
Abstract Full Text PDF–849K Supplementary Material
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 Is Cited by the Following 31 Articles in this Archive:
Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions
Keiichi Mochida, Kazuo Shinozaki
Plant Cell Physiol. 2011 December; 52(12): 2017–2038. Published online 2011 December 6. doi: 10.1093/pcp/pcr153
PMCID:
PMC3233218
Abstract Full Text PDF–1.6M
The Role of Histone Methylation and H2A.Z Occupancy during Rapid Activation of Ethylene Responsive Genes
Yongfeng Hu, Yuan Shen, Natalia Conde e Silva, Dao-Xiu Zhou
PLoS One. 2011; 6(11): e28224. Published online 2011 November 28. doi: 10.1371/journal.pone.0028224
PMCID:
PMC3225391
Abstract Full Text PDF–747K Supplementary Material
Arabidopsis Homologs of Retinoblastoma-Associated Protein 46/48 Associate with a Histone Deacetylase to Act Redundantly in Chromatin Silencing
Xiaofeng Gu, Danhua Jiang, Wannian Yang, Yannick Jacob, Scott D. Michaels, Yuehui He
PLoS Genet. 2011 November; 7(11): e1002366. Published online 2011 November 10. doi: 10.1371/journal.pgen.1002366
PMCID:
PMC3213158
Abstract Full Text PDF–1.0M Supplementary Material
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
François Roudier, Ikhlak Ahmed, Caroline Bérard, Alexis Sarazin, Tristan Mary-Huard, Sandra Cortijo, Daniel Bouyer, Erwann Caillieux, Evelyne Duvernois-Berthet, Liza Al-Shikhley, Laurène Giraut, Barbara Després, Stéphanie Drevensek, Frédy Barneche, Sandra Dèrozier, Véronique Brunaud, Sébastien Aubourg, Arp Schnittger, Chris Bowler, Marie-Laure Martin-Magniette, Stéphane Robin, Michel Caboche, Vincent Colot
EMBO J. 2011 May 18; 30(10): 1928–1938. Published online 2011 April 12. doi: 10.1038/emboj.2011.103
PMCID:
PMC3098477
Abstract Full Text PDF–906K Supplementary Material
High-throughput approaches for plant epigenomic studies
Robert J Schmitz, Xiaoyu Zhang
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 October 4.
Published in final edited form as: Curr Opin Plant Biol. 2011 April; 14(2): 130–136. Published online 2011 April 4. doi: 10.1016/j.pbi.2011.03.010
PMCID:
PMC3112054
Abstract Full Text PDF–158K
Coordinated histone modifications are associated with gene expression variation within and between species
Misook Ha, Danny W-K. Ng, Wen-Hsiung Li, Z. Jeffrey Chen
Genome Res. 2011 April; 21(4): 590–598. doi: 10.1101/gr.116467.110
PMCID:
PMC3065706
Abstract Full Text PDF–1.1M
H3 Lysine 4 Is Acetylated at Active Gene Promoters and Is Regulated by H3 Lysine 4 Methylation
Benoit Guillemette, Paul Drogaris, Hsiu-Hsu Sophia Lin, Harry Armstrong, Kyoko Hiragami-Hamada, Axel Imhof, Éric Bonneil, Pierre Thibault, Alain Verreault, Richard J. Festenstein
PLoS Genet. 2011 March; 7(3): e1001354. Published online 2011 March 31. doi: 10.1371/journal.pgen.1001354
PMCID:
PMC3069113
Abstract Full Text PDF–3.7M Supplementary Material
Arabidopsis COMPASS-Like Complexes Mediate Histone H3 Lysine-4 Trimethylation to Control Floral Transition and Plant Development
Danhua Jiang, Nicholas C. Kong, Xiaofeng Gu, Zicong Li, Yuehui He
PLoS Genet. 2011 March; 7(3): e1001330. Published online 2011 March 10. doi: 10.1371/journal.pgen.1001330
PMCID:
PMC3053346
Abstract Full Text PDF–1.3M Supplementary Material
Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition
Daniel Bouyer, Francois Roudier, Maren Heese, Ellen D. Andersen, Delphine Gey, Moritz K. Nowack, Justin Goodrich, Jean-Pierre Renou, Paul E. Grini, Vincent Colot, Arp Schnittger
PLoS Genet. 2011 March; 7(3): e1002014. Published online 2011 March 10. doi: 10.1371/journal.pgen.1002014
PMCID:
PMC3053347
Abstract Full Text PDF–2.5M Supplementary Material
Rapid and Reversible Light-Mediated Chromatin Modifications of Arabidopsis Phytochrome A Locus
In-Cheol Jang, Pil Joong Chung, Hans Hemmes, Choonkyun Jung, Nam-Hai Chua
Plant Cell. 2011 February; 23(2): 459–470. Published online 2011 February 11. doi: 10.1105/tpc.110.080481
PMCID:
PMC3077797
Abstract Full Text PDF–977K
Genome-wide mapping of Arabidopsis origins of DNA replication and their associated epigenetic marks
Celina Costas, Maria de la Paz Sanchez, Hume Stroud, Yanchun Yu, Juan Carlos Oliveros, Suhua Feng, Alberto Benguria, Irene López-Vidriero, Xiaoyu Zhang, Roberto Solano, Steven E. Jacobsen, Crisanto Gutierrez
Nat Struct Mol Biol. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Nat Struct Mol Biol. 2011 March; 18(3): 395–400. Published online 2011 February 6. doi: 10.1038/nsmb.1988
PMCID:
PMC3079358
Abstract Full Text PDF–859K Supplementary Material
Two Distinct Roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at Promoters and within Transcribed Regions of ATX1-Regulated Genes
Yong Ding, Zoya Avramova, Michael Fromm
Plant Cell. 2011 January; 23(1): 350–363. Published online 2011 January 25. doi: 10.1105/tpc.110.080150
PMCID:
PMC3051232
Abstract Full Text PDF–1.4M
Epigenetic modifications in plants: an evolutionary perspective
Suhua Feng, Steven E Jacobsen
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 October 1.
Published in final edited form as: Curr Opin Plant Biol. 2011 April; 14(2): 179–186. Published online 2011 January 11. doi: 10.1016/j.pbi.2010.12.002
PMCID:
PMC3097131
Abstract Full Text PDF–82K
Histone variants and modifications in plant gene regulation
Roger B. Deal, Steven Henikoff
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 October 1.
Published in final edited form as: Curr Opin Plant Biol. 2011 April; 14(2): 116–122. Published online 2010 December 13. doi: 10.1016/j.pbi.2010.11.005
PMCID:
PMC3093162
Abstract Full Text PDF–79K
Arabidopsis thaliana telomeres exhibit euchromatic features
María I. Vaquero-Sedas, Francisco M. Gámez-Arjona, Miguel A. Vega-Palas
Nucleic Acids Res. 2011 March; 39(6): 2007–2017. Published online 2010 November 10. doi: 10.1093/nar/gkq1119
PMCID:
PMC3064777
Abstract Full Text PDF–3.1M Supplementary Material
Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation
Angelique Deleris, Maxim V C Greenberg, Israel Ausin, Rona W Y Law, Guillaume Moissiard, Daniel Schubert, Steven E Jacobsen
EMBO Rep. 2010 December; 11(12): 950–955. Published online 2010 November 5. doi: 10.1038/embor.2010.158
PMCID:
PMC2999860
Abstract Full Text PDF–604K Supplementary Material
Dynamic changes in genome-wide histone H3 lysine 4 methylation patterns in response to dehydration stress in Arabidopsis thaliana
Karin van Dijk, Yong Ding, Sridhar Malkaram, Jean-Jack M Riethoven, Rong Liu, Jingyi Yang, Peter Laczko, Han Chen, Yuannan Xia, Istvan Ladunga, Zoya Avramova, Michael Fromm
BMC Plant Biol. 2010; 10: 238. Published online 2010 November 5. doi: 10.1186/1471-2229-10-238
PMCID:
PMC3095321
Abstract Full Text PDF–2.5M Supplementary Material
Arabidopsis SET DOMAIN GROUP2 Is Required for H3K4 Trimethylation and Is Crucial for Both Sporophyte and Gametophyte Development
Alexandre Berr, Emily J. McCallum, Rozenn Ménard, Denise Meyer, Jörg Fuchs, Aiwu Dong, Wen-Hui Shen
Plant Cell. 2010 October; 22(10): 3232–3248. Published online 2010 October 29. doi: 10.1105/tpc.110.079962
PMCID:
PMC2990135
Abstract Full Text PDF–2.4M Supplementary Material
SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis
Lin Guo, Yanchun Yu, Julie A. Law, Xiaoyu Zhang
Proc Natl Acad Sci U S A. 2010 October 26; 107(43): 18557–18562. Published online 2010 October 11. doi: 10.1073/pnas.1010478107
Correction in:
Proc Natl Acad Sci U S A. 2010 December 21; 107(51): 22360.
PMCID:
PMC2972934
Abstract Full Text PDF–1.1M Supplementary Material Correction
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases
Yannick Jacob, Hume Stroud, Chantal LeBlanc, Suhua Feng, Luting Zhou, Elena Caro, Christiane Hassel, Crisanto Gutierrez, Scott D. Michaels, Steven E. Jacobsen
Nature. Author manuscript; available in PMC 2011 February 1.
Published in final edited form as: Nature. 2010 August 19; 466(7309): 987–991. Published online 2010 July 14. doi: 10.1038/nature09290
PMCID:
PMC2964344
Abstract Full Text PDF–221K Supplementary Material
A simple method for gene expression and chromatin profiling of individual cell types within a tissue
Roger B. Deal, Steven Henikoff
Dev Cell. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Dev Cell. 2010 June 15; 18(6): 1030–1040. doi: 10.1016/j.devcel.2010.05.013
PMCID:
PMC2905389
Abstract Full Text PDF–3.1M Supplementary Material
Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State
Tae-Jin Lee, Pete E. Pascuzzi, Sharon B. Settlage, Randall W. Shultz, Milos Tanurdzic, Pablo D. Rabinowicz, Margit Menges, Ping Zheng, Dorrie Main, James A. H. Murray, Bryon Sosinski, George C. Allen, Robert A. Martienssen, Linda Hanley-Bowdoin, Matthew W. Vaughn, William F. Thompson
PLoS Genet. 2010 June; 6(6): e1000982. Published online 2010 June 10. doi: 10.1371/journal.pgen.1000982
PMCID:
PMC2883604
Abstract Full Text PDF–1.2M Supplementary Material
The Arabidopsis Paf1c Complex Component CDC73 Participates in the Modification of FLOWERING LOCUS C Chromatin
Xuhong Yu, Scott D. Michaels
Plant Physiol. 2010 July; 153(3): 1074–1084. Published online 2010 May 12. doi: 10.1104/pp.110.158386
PMCID:
PMC2899897
Abstract Full Text PDF–1.1M Supplementary Material
Regulation by Polycomb and Trithorax Group Proteins in Arabidopsis
Raúl Alvarez-Venegas
Arabidopsis Book. 2010; 8: e0128. Published online 2010 May 8. doi: 10.1199/tab.0128
PMCID:
PMC3244960
Abstract Full Text PDF–2.3M
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law, Steven E. Jacobsen
Nat Rev Genet. Author manuscript; available in PMC 2011 April 12.
Published in final edited form as: Nat Rev Genet. 2010 March; 11(3): 204–220. doi: 10.1038/nrg2719
PMCID:
PMC3034103
Abstract Full Text PDF–1.0M
Arabidopsis Histone Lysine Methyltransferases
FRÉDÉRIC PONTVIANNE, TODD BLEVINS, CRAIG S. PIKAARD
Adv Bot Res. Author manuscript; available in PMC 2010 August 10.
Published in final edited form as: Adv Bot Res. 2010 January 1; 53: 1–22. doi: 10.1016/S0065-2296(10)53001-5
PMCID:
PMC2918895
Abstract Full Text PDF–1.1M
OMICS MEET NETWORKS - USING SYSTEMS APPROACHES TO INFER REGULATORY NETWORKS IN PLANTS
Miguel A. Moreno-Risueno, Wolfgang Busch, Philip N. Benfey
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 April 1.
Published in final edited form as: Curr Opin Plant Biol. 2010 April; 13(2): 126–131. Published online 2009 December 28. doi: 10.1016/j.pbi.2009.11.005
PMCID:
PMC2862083
Abstract Full Text PDF–716K
High-resolution mapping studies of chromatin and gene regulatory elements
Alan P Boyle, Terrence S Furey
Epigenomics. Author manuscript; available in PMC 2010 October 1.
Published in final edited form as: Epigenomics. 2009 December 1; 1(2): 319–329. doi: 10.2217/epi.09.29
PMCID:
PMC2877397
Abstract Full Text PDF–254K
Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome
Sanzhen Liu, Cheng-Ting Yeh, Tieming Ji, Kai Ying, Haiyan Wu, Ho Man Tang, Yan Fu, Dan Nettleton, Patrick S. Schnable
PLoS Genet. 2009 November; 5(11): e1000733. Published online 2009 November 20. doi: 10.1371/journal.pgen.1000733
PMCID:
PMC2774946
Abstract Full Text PDF–810K Supplementary Material
SET DOMAIN GROUP25 Encodes a Histone Methyltransferase and Is Involved in FLOWERING LOCUS C Activation and Repression of Flowering
Alexandre Berr, Lin Xu, Juan Gao, Valérie Cognat, Andre Steinmetz, Aiwu Dong, Wen-Hui Shen
Plant Physiol. 2009 November; 151(3): 1476–1485. doi: 10.1104/pp.109.143941
PMCID:
PMC2773071
Abstract Full Text PDF–1020K Supplementary Material
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