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A review on SNP and other types of molecular markers and their use in animal genetics
Alain Vignal, Denis Milan, Magali SanCristobal, André Eggen
Genet Sel Evol. 2002; 34(3): 275–305. Published online 2002 May 15. doi: 10.1186/1297-9686-34-3-275
PMCID:
PMC2705447
Abstract Full Text PDF–474K

Is Cited by the Following 26 Articles in this Archive:

MolabIS - An integrated information system for storing and managing molecular genetics data
Cong VC Truong, Linn F Groeneveld, Burkhard Morgenstern, Eildert Groeneveld
BMC Bioinformatics. 2011; 12: 425. Published online 2011 October 31. doi: 10.1186/1471-2105-12-425
PMCID:
PMC3268772
Abstract Full Text PDF–1.1M Supplementary Material
Detection of Single-Nucleotide Polymorphism on uidA Gene of Escherichia coli by a Multiplexed Electrochemical DNA Biosensor with Oligonucleotide-Incorporated Nonfouling Surface
Gang Liu, Ruojun Lao, Li Xu, Qin Xu, Lanying Li, Min Zhang, Hao Shen, Sanjay Mathur, Chunhai Fan, Shiping Song
Sensors (Basel) 2011; 11(8): 8018–8027. Published online 2011 August 15. doi: 10.3390/s110808018
PMCID:
PMC3231733
Abstract Full Text PDF–1.1M
Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle
Marte Sodeland, Harald Grove, Matthew Kent, Simon Taylor, Morten Svendsen, Ben J Hayes, Sigbjørn Lien
BMC Genet. 2011; 12: 70. Published online 2011 August 11. doi: 10.1186/1471-2156-12-70
PMCID:
PMC3171720
Abstract Full Text PDF–335K Supplementary Material
Transcriptome Sequencing, and Rapid Development and Application of SNP Markers for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)
Venu M. Margam, Brad S. Coates, Darrell O. Bayles, Richard L. Hellmich, Tolulope Agunbiade, Manfredo J. Seufferheld, Weilin Sun, Jeremy A. Kroemer, Malick N. Ba, Clementine L. Binso-Dabire, Ibrahim Baoua, Mohammad F. Ishiyaku, Fernando G. Covas, Ramasamy Srinivasan, Joel Armstrong, Larry L. Murdock, Barry R. Pittendrigh
PLoS One. 2011; 6(7): e21388. Published online 2011 July 6. doi: 10.1371/journal.pone.0021388
PMCID:
PMC3130784
Abstract Full Text PDF–681K Supplementary Material
Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)
Robert HS Kraus, Hindrik HD Kerstens, Pim Van Hooft, Richard PMA Crooijmans, Jan J Van Der Poel, Johan Elmberg, Alain Vignal, Yinhua Huang, Ning Li, Herbert HT Prins, Martien AM Groenen
BMC Genomics. 2011; 12: 150. Published online 2011 March 16. doi: 10.1186/1471-2164-12-150
PMCID:
PMC3065436
Abstract Full Text PDF–933K Supplementary Material
Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach
Rune Andreassen, Sigbjørn Lunner, Bjørn Høyheim
BMC Genomics. 2010; 11: 706. Published online 2010 December 15. doi: 10.1186/1471-2164-11-706
PMCID:
PMC3053593
Abstract Full Text PDF–266K Supplementary Material
Rapid Detection of Multidrug-Resistant Mycobacterium tuberculosis by Use of Real-Time PCR and High-Resolution Melt Analysis
Melissa V. Ramirez, Kelley C. Cowart, Patricia J. Campbell, Glenn P. Morlock, David Sikes, Jonas M. Winchell, James E. Posey
J Clin Microbiol. 2010 November; 48(11): 4003–4009. Published online 2010 September 1. doi: 10.1128/JCM.00812-10
PMCID:
PMC3020863
Abstract Full Text PDF–842K
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea
Chrystel Deulvot, Hélène Charrel, Amandine Marty, Françoise Jacquin, Cécile Donnadieu, Isabelle Lejeune-Hénaut, Judith Burstin, Grégoire Aubert
BMC Genomics. 2010; 11: 468. Published online 2010 August 11. doi: 10.1186/1471-2164-11-468
PMCID:
PMC3091664
Abstract Full Text PDF–849K Supplementary Material
Detection and correction of false segmental duplications caused by genome mis-assembly
David R Kelley, Steven L Salzberg
Genome Biol. 2010; 11(3): R28. Published online 2010 March 10. doi: 10.1186/gb-2010-11-3-r28
PMCID:
PMC2864568
Abstract Full Text PDF–1.2M Supplementary Material
Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers
Delphine Van Inghelandt, Albrecht E. Melchinger, Claude Lebreton, Benjamin Stich
Theor Appl Genet. 2010 May; 120(7): 1289–1299. Published online 2010 January 10. doi: 10.1007/s00122-009-1256-2
PMCID:
PMC2854351
Abstract Full Text PDF–423K Supplementary Material
A simple and efficient method for isolating polymorphic microsatellites from cDNA
Gen Hua Yue, Ze Yuan Zhu, Chun Ming Wang, Jun Hong Xia
BMC Genomics. 2009; 10: 125. Published online 2009 March 25. doi: 10.1186/1471-2164-10-125
PMCID:
PMC2667190
Abstract Full Text PDF–409K
Isolation and characterization of SNP variation at 90 anonymous loci in the banded wren (Thryothorus pleurostictus)
EMILY R. A. CRAMER, L. STENZLER, A. L. TALABA, C. A. MAKAREWICH, S. L. VEHRENCAMP, I. J. LOVETTE
Conserv Genet. Author manuscript; available in PMC 2008 December 4.
Published in final edited form as: Conserv Genet. 2008 December; 9(6): 1657–1660. doi: 10.1007/s10592-008-9511-7
PMCID:
PMC2593829
Abstract Full Text PDF–288K
An assessment of population structure in eight breeds of cattle using a whole genome SNP panel
Stephanie D McKay, Robert D Schnabel, Brenda M Murdoch, Lakshmi K Matukumalli, Jan Aerts, Wouter Coppieters, Denny Crews, Emmanuel Dias Neto, Clare A Gill, Chuan Gao, Hideyuki Mannen, Zhiquan Wang, Curt P Van Tassell, John L Williams, Jeremy F Taylor, Stephen S Moore
BMC Genet. 2008; 9: 37. Published online 2008 May 20. doi: 10.1186/1471-2156-9-37
PMCID:
PMC2408608
Abstract Full Text PDF–395K Supplementary Material
Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness
Martha T. Hamblin, Marilyn L. Warburton, Edward S. Buckler
PLoS ONE. 2007; 2(12): e1367. Published online 2007 December 26. doi: 10.1371/journal.pone.0001367
PMCID:
PMC2137949
Abstract Full Text PDF–355K Supplementary Material
Whole genome linkage disequilibrium maps in cattle
Stephanie D McKay, Robert D Schnabel, Brenda M Murdoch, Lakshmi K Matukumalli, Jan Aerts, Wouter Coppieters, Denny Crews, Emmanuel Dias Neto, Clare A Gill, Chuan Gao, Hideyuki Mannen, Paul Stothard, Zhiquan Wang, Curt P Van Tassell, John L Williams, Jeremy F Taylor, Stephen S Moore
BMC Genet. 2007; 8: 74. Published online 2007 October 25. doi: 10.1186/1471-2156-8-74
PMCID:
PMC2174945
Abstract Full Text PDF–1.0M Supplementary Material
Rapid Genetic Mapping in Neurospora crassa
Yuan Jin, Sabrina Allan, Lauren Baber, Eric K. Bhattarai, Teresa M. Lamb, Wayne K. Versaw
Fungal Genet Biol. Author manuscript; available in PMC 2007 August 24.
Published in final edited form as: Fungal Genet Biol. 2007 June; 44(6): 455–465. Published online 2006 October 23. doi: 10.1016/j.fgb.2006.09.002
PMCID:
PMC1951786
Abstract Full Text PDF–463K
Evaluation of Molecular-Beacon, TaqMan, and Fluorescence Resonance Energy Transfer Probes for Detection of Antibiotic Resistance-Conferring Single Nucleotide Polymorphisms in Mixed Mycobacterium tuberculosis DNA Extracts
Hasan Yesilkaya, Francesca Meacci, Stefan Niemann, Doris Hillemann, Sabine Rüsch-Gerdes, LONG DRUG Study Group, Michael R. Barer, Peter W. Andrew, Marco R. Oggioni
J Clin Microbiol. 2006 October; 44(10): 3826–3829. doi: 10.1128/JCM.00225-06
PMCID:
PMC1594805
Abstract Full Text PDF–53K
Genetic variation in the zebrafish
Victor Guryev, Marco J. Koudijs, Eugene Berezikov, Stephen L. Johnson, Ronald H.A. Plasterk, Fredericus J.M. van Eeden, Edwin Cuppen
Genome Res. 2006 April; 16(4): 491–497. doi: 10.1101/gr.4791006
PMCID:
PMC1457036
Abstract Full Text PDF–544K
A genetic variation map for chicken with 2.8 million single nucleotide polymorphisms
International Chicken Polymorphism Map Consortium
Nature. Author manuscript; available in PMC 2008 March 6.
Published in final edited form as: Nature. 2004 December 9; 432(7018): 717–722. doi: 10.1038/nature03156
PMCID:
PMC2263125
Abstract Full Text PDF–547K Supplementary Material
Single-nucleotide polymorphism discovery by targeted DNA photocleavage
Jonathan R. Hart, Martin D. Johnson, Jacqueline K. Barton
Proc Natl Acad Sci U S A. 2004 September 28; 101(39): 14040–14044. Published online 2004 September 21. doi: 10.1073/pnas.0406169101
PMCID:
PMC521117
Abstract Full Text PDF–467K Supplementary Material
Genetic Variation in Coding Regions Between and Within Commonly Used Inbred Rat Strains
Bart M.G. Smits, Bert F.M. van Zutphen, Ronald H.A. Plasterk, Edwin Cuppen
Genome Res. 2004 July; 14(7): 1285–1290. doi: 10.1101/gr.2155004
PMCID:
PMC442143
Abstract Full Text PDF–346K
Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences
Victor Guryev, Eugene Berezikov, Rainer Malik, Ronald H.A. Plasterk, Edwin Cuppen
Genome Res. 2004 July; 14(7): 1438–1443. doi: 10.1101/gr.2154304
PMCID:
PMC442160
Abstract Full Text PDF–200K
A Comparison of Rice Chloroplast Genomes
Jiabin Tang, Hong'ai Xia, Mengliang Cao, Xiuqing Zhang, Wanyong Zeng, Songnian Hu, Wei Tong, Jun Wang, Jian Wang, Jun Yu, Huanming Yang, Lihuang Zhu
Plant Physiol. 2004 May; 135(1): 412–420. doi: 10.1104/pp.103.031245
PMCID:
PMC429394
Abstract Full Text PDF–172K Supplementary Material
Hairpin Primers for Simplified Single-Nucleotide Polymorphism Analysis of Mycobacterium tuberculosis and Other Organisms
Manzour Hernando Hazbón, David Alland
J Clin Microbiol. 2004 March; 42(3): 1236–1242. doi: 10.1128/JCM.42.3.1236-1242.2004
PMCID:
PMC356870
Abstract Full Text PDF–846K
Real-time closed tube single nucleotide polymorphism (SNP) quantification in pooled samples by quencher extension (QEXT)
Knut Rudi, Askild L. Holck
Nucleic Acids Res. 2003 October 1; 31(19): e117. doi: 10.1093/nar/gng118
PMCID:
PMC206483
Abstract Full Text PDF–201K
Maximum-likelihood and markov chain monte carlo approaches to estimate inbreeding and effective size from allele frequency changes.
Guillaume Laval, Magali SanCristobal, Claude Chevalet
Genetics. 2003 July; 164(3): 1189–1204.
PMCID:
PMC1462632
Summary PDF–251K
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