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Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'
Michelle M Meyer, Tyler D Ames, Daniel P Smith, Zasha Weinberg, Michael S Schwalbach, Stephen J Giovannoni, Ronald R Breaker
BMC Genomics. 2009; 10: 268. Published online 2009 June 16. doi: 10.1186/1471-2164-10-268
PMCID:
PMC2704228
Abstract Full Text PDF–521K Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

The SAR11 Group of Alpha-Proteobacteria Is Not Related to the Origin of Mitochondria
Naiara Rodríguez-Ezpeleta, T. Martin Embley
PLoS One. 2012; 7(1): e30520. Published online 2012 January 23. doi: 10.1371/journal.pone.0030520
PMCID:
PMC3264578
Abstract Full Text PDF–729K Supplementary Material
Predicting coaxial helical stacking in RNA junctions
Christian Laing, Dongrong Wen, Jason T. L. Wang, Tamar Schlick
Nucleic Acids Res. 2012 January; 40(2): 487–498. Published online 2011 September 14. doi: 10.1093/nar/gkr629
PMCID:
PMC3258123
Abstract Full Text PDF–6.1M Supplementary Material
RNAcode: Robust discrimination of coding and noncoding regions in comparative sequence data
Stefan Washietl, Sven Findeiß, Stephan A. Müller, Stefan Kalkhof, Martin von Bergen, Ivo L. Hofacker, Peter F. Stadler, Nick Goldman
RNA. 2011 April; 17(4): 578–594. doi: 10.1261/rna.2536111
PMCID:
PMC3062170
Abstract Full Text PDF–1.5M
An expanded collection and refined consensus model of glmS ribozymes
Phillip J. McCown, Adam Roth, Ronald R. Breaker
RNA. 2011 April; 17(4): 728–736. doi: 10.1261/rna.2590811
PMCID:
PMC3062183
Abstract Full Text PDF–555K
Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation
Magali Naville, Daniel Gautheret
Genome Biol. 2010; 11(9): R97. Published online 2010 September 29. doi: 10.1186/gb-2010-11-9-r97
PMCID:
PMC2965389
Abstract Full Text PDF–2.0M Supplementary Material
Bcheck: a wrapper tool for detecting RNase P RNA genes
Dilmurat Yusuf, Manja Marz, Peter F Stadler, Ivo L Hofacker
BMC Genomics. 2010; 11: 432. Published online 2010 July 13. doi: 10.1186/1471-2164-11-432
PMCID:
PMC2996960
Abstract Full Text PDF–798K
Transcriptional and Translational Regulatory Responses to Iron Limitation in the Globally Distributed Marine Bacterium Candidatus Pelagibacter ubique
Daniel P. Smith, Joshua B. Kitner, Angela D. Norbeck, Therese R. Clauss, Mary S. Lipton, Michael S. Schwalbach, Laura Steindler, Carrie D. Nicora, Richard D. Smith, Stephen J. Giovannoni
PLoS One. 2010; 5(5): e10487. Published online 2010 May 5. doi: 10.1371/journal.pone.0010487
PMCID:
PMC2864753
Abstract Full Text PDF–635K Supplementary Material
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Zasha Weinberg, Joy X Wang, Jarrod Bogue, Jingying Yang, Keith Corbino, Ryan H Moy, Ronald R Breaker
Genome Biol. 2010; 11(3): R31. Published online 2010 March 15. doi: 10.1186/gb-2010-11-3-r31
PMCID:
PMC2864571
Abstract Full Text PDF–1.1M Supplementary Material
Atomistic basis for the on–off signaling mechanism in SAM-II riboswitch
Jennifer Munro Kelley, Donald Hamelberg
Nucleic Acids Res. 2010 March; 38(4): 1392–1400. Published online 2009 December 7. doi: 10.1093/nar/gkp1106
PMCID:
PMC3303485
Abstract Full Text PDF–7.6M Supplementary Material
A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria
Elena Poiata, Michelle M. Meyer, Tyler D. Ames, Ronald R. Breaker
RNA. 2009 November; 15(11): 2046–2056. doi: 10.1261/rna.1824209
PMCID:
PMC2764483
Abstract Full Text PDF–876K
Motifs from the deep
Tony W Hwang, Vlad Codrea, Andrew D Ellington
J Biol. 2009; 8(8): 72. Published online 2009 September 2. doi: 10.1186/jbiol174
PMCID:
PMC2776916
Abstract Full Text PDF–103K
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