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Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
Kira S Makarova, Yuri I Wolf, Eugene V Koonin
Biol Direct. 2009; 4: 19. Published online 2009 June 3. doi: 10.1186/1745-6150-4-19
PMCID:
PMC2701414
Abstract Full Text PDF–2.0M Supplementary Material

Is Cited by the Following 27 Articles in this Archive:

A Stress-Inducible Quorum-Sensing Peptide Mediates the Formation of Persister Cells with Noninherited Multidrug Tolerance
Vincent Leung, Céline M. Lévesque
J Bacteriol. 2012 May; 194(9): 2265–2274. doi: 10.1128/JB.06707-11
PMCID:
PMC3347057
Free in PMC on 2012/11/01
Identification of the First Functional Toxin-Antitoxin System in Streptomyces
Laura Sevillano, Margarita Díaz, Yoshihiro Yamaguchi, Masayori Inouye, Ramón I. Santamaría
PLoS One. 2012; 7(3): e32977. Published online 2012 March 14. doi: 10.1371/journal.pone.0032977
PMCID:
PMC3303803
Abstract Full Text PDF–1.4M
Molecular Structure and Function of the Novel BrnT/BrnA Toxin-Antitoxin System of Brucella abortus
Brook E. Heaton, Julien Herrou, Anne E. Blackwell, Vicki H. Wysocki, Sean Crosson
J Biol Chem. 2012 April 6; 287(15): 12098–12110. Published online 2012 February 14. doi: 10.1074/jbc.M111.332163
PMCID:
PMC3320955
Free in PMC on 2013/04/06
Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
Kira S. Makarova, Yuri I. Wolf, Sagi Snir, Eugene V. Koonin
J Bacteriol. 2011 November; 193(21): 6039–6056. doi: 10.1128/JB.05535-11
PMCID:
PMC3194920
Abstract Full Text PDF–3.3M Supplementary Material
Genetic Regulation of the yefM-yoeB Toxin-Antitoxin Locus of Streptococcus pneumoniae
Wai Ting Chan, Concha Nieto, Jennifer Ann Harikrishna, Seok Kooi Khoo, Rofina Yasmin Othman, Manuel Espinosa, Chew Chieng Yeo
J Bacteriol. 2011 September; 193(18): 4612–4625. doi: 10.1128/JB.05187-11
PMCID:
PMC3165651
Abstract Full Text PDF–1.4M Supplementary Material
A Toxin-Antitoxin Module in Bacillus subtilis Can Both Mitigate and Amplify Effects of Lethal Stress
Xiangli Wu, Xiuhong Wang, Karl Drlica, Xilin Zhao
PLoS One. 2011; 6(8): e23909. Published online 2011 August 29. doi: 10.1371/journal.pone.0023909
PMCID:
PMC3163665
Abstract Full Text PDF–269K Supplementary Material
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
Kira S Makarova, L Aravind, Yuri I Wolf, Eugene V Koonin
Biol Direct. 2011; 6: 38. Published online 2011 July 14. doi: 10.1186/1745-6150-6-38
PMCID:
PMC3150331
Abstract Full Text PDF–2.9M Supplementary Material
Toxin-Antitoxin (TA) Systems are Prevalent and Transcribed in Clinical Isolates of Pseudomonas aeruginosa and Methicillin-Resistant Staphylococcus aureus
Julia J. Williams, Elizabeth M. Halvorsen, Ellen M. Dwyer, Robert M. DiFazio, Paul J. Hergenrother
FEMS Microbiol Lett. Author manuscript; available in PMC 2012 September 1.
Published in final edited form as: FEMS Microbiol Lett. 2011 September; 322(1): 41–50. Published online 2011 July 13. doi: 10.1111/j.1574-6968.2011.02330.x
PMCID:
PMC3184004
Free in PMC on 2012/09/01
VapC6, a ribonucleolytic toxin regulates thermophilicity in the crenarchaeote Sulfolobus solfataricus
Yukari Maezato, Amanda Daugherty, Karl Dana, Edith Soo, Charlotte Cooper, Sabrina Tachdjian, Robert M. Kelly, Paul Blum
RNA. 2011 July; 17(7): 1381–1392. doi: 10.1261/rna.2679911
PMCID:
PMC3138573
Abstract Full Text PDF–635K
Virulence Factors of the Oral Spirochete Treponema denticola
S.G. Dashper, C.A. Seers, K.H. Tan, E.C. Reynolds
J Dent Res. 2011 June; 90(6): 691–703. doi: 10.1177/0022034510385242
PMCID:
PMC3144123
Free in PMC on 2012/06/01
Structural Basis of Defects in the Sacsin HEPN Domain Responsible for Autosomal Recessive Spastic Ataxia of Charlevoix-Saguenay (ARSACS)
Guennadi Kozlov, Alexey Y. Denisov, Martine Girard, Marie-Josée Dicaire, Jason Hamlin, Peter S. McPherson, Bernard Brais, Kalle Gehring
J Biol Chem. 2011 June 10; 286(23): 20407–20412. Published online 2011 April 20. doi: 10.1074/jbc.M111.232884
PMCID:
PMC3121481
Free in PMC on 2012/06/10
Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes
Vera P Pisareva, Maxim A Skabkin, Christopher U T Hellen, Tatyana V Pestova, Andrey V Pisarev
EMBO J. 2011 May 4; 30(9): 1804–1817. Published online 2011 March 29. doi: 10.1038/emboj.2011.93
PMCID:
PMC3101999
Abstract Full Text PDF–749K Supplementary Material
Diversity of bacterial type II toxin–antitoxin systems: a comprehensive search and functional analysis of novel families
Raphaël Leplae, Damien Geeraerts, Régis Hallez, Julien Guglielmini, Pierre Drèze, Laurence Van Melderen
Nucleic Acids Res. 2011 July; 39(13): 5513–5525. Published online 2011 March 21. doi: 10.1093/nar/gkr131
PMCID:
PMC3141249
Abstract Full Text PDF–4.9M Supplementary Material
Txe, an endoribonuclease of the enterococcal Axe–Txe toxin–antitoxin system, cleaves mRNA and inhibits protein synthesis
Elizabeth M. Halvorsen, Julia J. Williams, Azra J. Bhimani, Emily A. Billings, Paul J. Hergenrother
Microbiology. 2011 February; 157(Pt 2): 387–397. doi: 10.1099/mic.0.045492-0
PMCID:
PMC3090131
Abstract Full Text PDF–374K
A simple and efficient method to search for selected primary transcripts: non-coding and antisense RNAs in the human pathogen Enterococcus faecalis
Aymeric Fouquier d’Hérouel, Françoise Wessner, David Halpern, Joseph Ly-Vu, Sean P. Kennedy, Pascale Serror, Erik Aurell, Francis Repoila
Nucleic Acids Res. 2011 April; 39(7): e46. Published online 2011 January 25. doi: 10.1093/nar/gkr012
PMCID:
PMC3074167
Abstract Full Text PDF–1.6M Supplementary Material
The phage-host arms-race: Shaping the evolution of microbes
Adi Stern, Rotem Sorek
Bioessays. Author manuscript; available in PMC 2012 February 8.
Published in final edited form as: Bioessays. 2011 January; 33(1): 43–51. doi: 10.1002/bies.201000071
PMCID:
PMC3274958
Abstract Full Text PDF–746K
The Chromosomal mazEF Locus of Streptococcus mutans Encodes a Functional Type II Toxin-Antitoxin Addiction System
Mohammad Adnan Syed, Stephanie Koyanagi, Eesha Sharma, Marie-Claude Jobin, Alexander F. Yakunin, Céline M. Lévesque
J Bacteriol. 2011 March; 193(5): 1122–1130. Published online 2010 December 23. doi: 10.1128/JB.01114-10
PMCID:
PMC3067577
Abstract Full Text PDF–835K Supplementary Material
TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea
Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng
Nucleic Acids Res. 2011 January; 39(Database issue): D606–D611. Published online 2010 October 6. doi: 10.1093/nar/gkq908
PMCID:
PMC3013778
Abstract Full Text PDF–4.2M
Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence
Eitan Rotem, Adiel Loinger, Irine Ronin, Irit Levin-Reisman, Chana Gabay, Noam Shoresh, Ofer Biham, Nathalie Q. Balaban
Proc Natl Acad Sci U S A. 2010 July 13; 107(28): 12541–12546. Published online 2010 June 28. doi: 10.1073/pnas.1004333107
PMCID:
PMC2906590
Abstract Full Text PDF–1.2M Supplementary Material
Analyzing the Regulatory Role of the HigA Antitoxin within Mycobacterium tuberculosis
Amanda S. Fivian-Hughes, Elaine O. Davis
J Bacteriol. 2010 September; 192(17): 4348–4356. Published online 2010 June 28. doi: 10.1128/JB.00454-10
PMCID:
PMC2937366
Abstract Full Text PDF–1.0M Supplementary Material
The relBE2Spn Toxin-Antitoxin System of Streptococcus pneumoniae: Role in Antibiotic Tolerance and Functional Conservation in Clinical Isolates
Concha Nieto, Ewa Sadowy, Adela G. de la Campa, Waleria Hryniewicz, Manuel Espinosa
PLoS One. 2010; 5(6): e11289. Published online 2010 June 23. doi: 10.1371/journal.pone.0011289
PMCID:
PMC2890582
Abstract Full Text PDF–1.1M Supplementary Material
The Yersinia pestis Chromosome Encodes Active Addiction Toxins
Céline Goulard, Sophie Langrand, Elisabeth Carniel, Sylvie Chauvaux
J Bacteriol. 2010 July; 192(14): 3669–3677. Published online 2010 May 14. doi: 10.1128/JB.00336-10
PMCID:
PMC2897361
Abstract Full Text PDF–833K Supplementary Material
Interaction specificity, toxicity, and regulation of a paralogous set of ParE/RelE-family toxin-antitoxin systems
Aretha Fiebig, Cyd Marie Castro Rojas, Dan Siegal-Gaskins, Sean Crosson
Mol Microbiol. Author manuscript; available in PMC 2011 July 1.
Published in final edited form as: Mol Microbiol. 2010 July 1; 77(1): 236–251. Published online 2010 May 12. doi: 10.1111/j.1365-2958.2010.07207.x
PMCID:
PMC2907451
Abstract Full Text PDF–1.5M Supplementary Material
The Escherichia coli mqsR and ygiT Genes Encode a New Toxin-Antitoxin Pair
Villu Kasari, Kristi Kurg, Tõnu Margus, Tanel Tenson, Niilo Kaldalu
J Bacteriol. 2010 June; 192(11): 2908–2919. Published online 2010 March 16. doi: 10.1128/JB.01266-09
PMCID:
PMC2876487
Abstract Full Text PDF–1.5M Supplementary Material
Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families
Elizabeth M. Fozo, Kira S. Makarova, Svetlana A. Shabalina, Natalya Yutin, Eugene V. Koonin, Gisela Storz
Nucleic Acids Res. 2010 June; 38(11): 3743–3759. Published online 2010 February 15. doi: 10.1093/nar/gkq054
PMCID:
PMC2887945
Abstract Full Text PDF–9.6M Supplementary Material
Comprehensive Functional Analysis of Mycobacterium tuberculosis Toxin-Antitoxin Systems: Implications for Pathogenesis, Stress Responses, and Evolution
Holly R. Ramage, Lynn E. Connolly, Jeffery S. Cox
PLoS Genet. 2009 December; 5(12): e1000767. Published online 2009 December 11. doi: 10.1371/journal.pgen.1000767
PMCID:
PMC2781298
Abstract Full Text PDF–1.7M Supplementary Material
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements
Kira S Makarova, Yuri I Wolf, John van der Oost, Eugene V Koonin
Biol Direct. 2009; 4: 29. Published online 2009 August 25. doi: 10.1186/1745-6150-4-29
PMCID:
PMC2743648
Abstract Full Text PDF–579K Supplementary Material
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