My NCBISign In
Conservation of core gene expression in vertebrate tissues
Esther T Chan, Gerald T Quon, Gordon Chua, Tomas Babak, Miles Trochesset, Ralph A Zirngibl, Jane Aubin, Michael JH Ratcliffe, Andrew Wilde, Michael Brudno, Quaid D Morris, Timothy R Hughes
J Biol. 2009; 8(3): 33. Published online 2009 April 16. doi: 10.1186/jbiol130
PMCID:
PMC2689434
Abstract Full Text PDF–1.8M Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Evolution of Nucleosome Occupancy: Conservation of Global Properties and Divergence of Gene-Specific Patterns
Kyle Tsui, Sébastien Dubuis, Marinella Gebbia, Randall H. Morse, Naama Barkai, Itay Tirosh, Corey Nislow
Mol Cell Biol. 2011 November; 31(21): 4348–4355. doi: 10.1128/MCB.05276-11
PMCID:
PMC3209338
Abstract Full Text PDF–1.8M Supplementary Material
No Excess Gene Movement Is Detected off the Avian or Lepidopteran Z Chromosome
Melissa A. Toups, James B. Pease, Matthew W. Hahn
Genome Biol Evol. 2011; 3: 1381–1390. Published online 2011 October 24. doi: 10.1093/gbe/evr109
PMCID:
PMC3242482
Abstract Full Text PDF–143K
Regulation of Pou4f3 Gene Expression in Hair Cells by 5’ DNA in Mice
Masatsugu Masuda, Didier Dulon, Kwang Pak, Lina M. Mullen, Yan Li, Linda Erkman, Allen F. Ryan
Neuroscience. Author manuscript; available in PMC 2012 December 1.
Published in final edited form as: Neuroscience. 2011 December 1; 197: 48–64. Published online 2011 September 19. doi: 10.1016/j.neuroscience.2011.09.033
PMCID:
PMC3243488
Free in PMC on 2012/12/01
Pol III binding in six mammalian genomes shows high conservation among amino acid isotypes, despite divergence in tRNA gene usage
Claudia Kutter, Gordon D. Brown, Ângela Gonçalves, Michael D. Wilson, Stephen Watt, Alvis Brazma, Robert J. White, Duncan T. Odom
Nat Genet. Author manuscript; available in PMC 2012 April 1.
Published in final edited form as: Nat Genet. 2011 August 28; 43(10): 948–955. doi: 10.1038/ng.906
PMCID:
PMC3184141
Abstract Full Text PDF–1.8M Supplementary Material
Comparative Network Analysis Reveals That Tissue Specificity and Gene Function Are Important Factors Influencing the Mode of Expression Evolution in Arabidopsis and Rice
Sara Movahedi, Yves Van de Peer, Klaas Vandepoele
Plant Physiol. 2011 July; 156(3): 1316–1330. Published online 2011 May 13. doi: 10.1104/pp.111.177865
PMCID:
PMC3135928
Free in PMC on 2012/07/01
The similarity of gene expression between human and mouse tissues
Robin D Dowell
Genome Biol. 2011; 12(1): 101. Published online 2011 January 17. doi: 10.1186/gb-2011-12-1-101
PMCID:
PMC3091293
Abstract Full Text PDF–230K
Large scale comparison of global gene expression patterns in human and mouse
Xiangqun Zheng-Bradley, Johan Rung, Helen Parkinson, Alvis Brazma
Genome Biol. 2010; 11(12): R124. Published online 2010 December 23. doi: 10.1186/gb-2010-11-12-r124
PMCID:
PMC3046484
Abstract Full Text PDF–2.0M Supplementary Material
Coordinated Genome-Wide Modifications within Proximal Promoter Cis-regulatory Elements during Vertebrate Evolution
Ken Daigoro Yokoyama, Jeffrey L. Thorne, Gregory A. Wray
Genome Biol Evol. 2011; 3: 66–74. Published online 2010 November 30. doi: 10.1093/gbe/evq078
PMCID:
PMC3021792
Abstract Full Text PDF–211K
Is Transcription Factor Binding Site Turnover a Sufficient Explanation for Cis-Regulatory Sequence Divergence?
Sandeep Venkataram, Justin C. Fay
Genome Biol Evol. 2010; 2: 851–858. Published online 2010 November 11. doi: 10.1093/gbe/evq066
PMCID:
PMC2997565
Abstract Full Text PDF–230K
Significant Selective Constraint at 4-Fold Degenerate Sites in the Avian Genome and Its Consequence for Detection of Positive Selection
Axel Künstner, Benoit Nabholz, Hans Ellegren
Genome Biol Evol. 2011; 3: 1381–1389. Published online 2010 October 31. doi: 10.1093/gbe/evr112
PMCID:
PMC3242499
Abstract Full Text PDF–185K
Evolutionary Analysis and Expression Profiling of Zebra Finch Immune Genes
Robert Ekblom, Lisa French, Jon Slate, Terry Burke
Genome Biol Evol. 2010; 2: 781–790. Published online 2010 September 30. doi: 10.1093/gbe/evq061
PMCID:
PMC2975445
Abstract Full Text PDF–183K
Cross-species queries of large gene expression databases
Hai-Son Le, Zoltán N. Oltvai, Ziv Bar-Joseph
Bioinformatics. 2010 October 1; 26(19): 2416–2423. Published online 2010 August 11. doi: 10.1093/bioinformatics/btq451
PMCID:
PMC2944203
Abstract Full Text PDF–293K Supplementary Material
Gene Expression in Chicken Reveals Correlation with Structural Genomic Features and Conserved Patterns of Transcription in the Terrestrial Vertebrates
Haisheng Nie, Richard P. M. A. Crooijmans, Aart Lammers, Evert M. van Schothorst, Jaap Keijer, Pieter B. T. Neerincx, Jack A. M. Leunissen, Hendrik-Jan Megens, Martien A. M. Groenen
PLoS One. 2010; 5(8): e11990. Published online 2010 August 5. doi: 10.1371/journal.pone.0011990
PMCID:
PMC2916831
Abstract Full Text PDF–501K Supplementary Material
The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity
Deborah I. Ritter, Qiang Li, Dennis Kostka, Katherine S. Pollard, Su Guo, Jeffrey H. Chuang
Mol Biol Evol. 2010 October; 27(10): 2322–2332. Published online 2010 May 21. doi: 10.1093/molbev/msq128
PMCID:
PMC3107594
Abstract Full Text PDF–866K Supplementary Material
Selection for the compactness of highly expressed genes in Gallus gallus
You S Rao, Zhang F Wang, Xue W Chai, Guo Z Wu, Ming Zhou, Qing H Nie, Xi Q Zhang
Biol Direct. 2010; 5: 35. Published online 2010 May 14. doi: 10.1186/1745-6150-5-35
PMCID:
PMC2883972
Abstract Full Text PDF–831K Supplementary Material
Five vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
Dominic Schmidt, Michael D. Wilson, Benoit Ballester, Petra C. Schwalie, Gordon D. Brown, Aileen Marshall, Claudia Kutter, Stephen Watt, Celia P. Martinez-Jimenez, Sarah Mackay, Iannis Talianidis, Paul Flicek, Duncan T. Odom
Science. Author manuscript; available in PMC 2010 December 23.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1036–1040. Published online 2010 April 8. doi: 10.1126/science.1186176
PMCID:
PMC3008766
Abstract Full Text PDF–1.0M Supplementary Material
Contrasting genetic paths to morphological and physiological evolution
Ben-Yang Liao, Meng-Pin Weng, Jianzhi Zhang
Proc Natl Acad Sci U S A. 2010 April 20; 107(16): 7353–7358. Published online 2010 April 5. doi: 10.1073/pnas.0910339107
PMCID:
PMC2867737
Abstract Full Text PDF–350K Supplementary Material
Top ten in Journal of Biology in 2009: stem cells, influenza, pit bulls, Darwin, and more
Miranda Robertson
J Biol. 2009; 8(12): 102. Published online 2009 December 31. doi: 10.1186/jbiol210
PMCID:
PMC2804281
Full Text PDF–59K
Gene regulation, evolvability and the limits of genomics
Miranda Robertson
J Biol. 2009; 8(11): 94. Published online 2009 December 24. doi: 10.1186/jbiol209
PMCID:
PMC2804289
Full Text PDF–52K
Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen
J Biol. 2009; 8(11): 95. Published online 2009 December 14. doi: 10.1186/jbiol204
PMCID:
PMC2804285
Abstract Full Text PDF–177K
The genomic 'inner fish' and a regulatory enigma in the vertebrates
John Malone, Brian Oliver
J Biol. 2009; 8(3): 32. Published online 2009 April 16. doi: 10.1186/jbiol131
PMCID:
PMC2689435
Abstract Full Text PDF–244K
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