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Choosing the right path: enhancement of biologically relevant sets of genes or proteins using pathway structure
Reuben Thomas, Julia M Gohlke, Geffrey F Stopper, Frederick M Parham, Christopher J Portier
Genome Biol. 2009; 10(4): R44. Published online 2009 April 24. doi: 10.1186/gb-2009-10-4-r44
PMCID:
PMC2688935
Abstract Full Text PDF–678K Supplementary Material

Is Cited by the Following 5 Articles in this Archive:

A network-based gene-weighting approach for pathway analysis
Zhaoyuan Fang, Weidong Tian, Hongbin Ji
Cell Res. 2012 March; 22(3): 565–580. Published online 2011 September 6. doi: 10.1038/cr.2011.149
PMCID:
PMC3292304
Free in PMC on 2013/03/01
Genome-Wide Functional Profiling Reveals Genes Required for Tolerance to Benzene Metabolites in Yeast
Matthew North, Vickram J. Tandon, Reuben Thomas, Alex Loguinov, Inna Gerlovina, Alan E. Hubbard, Luoping Zhang, Martyn T. Smith, Chris D. Vulpe
PLoS One. 2011; 6(8): e24205. Published online 2011 August 30. doi: 10.1371/journal.pone.0024205
PMCID:
PMC3166172
Abstract Full Text PDF–908K Supplementary Material
Global Gene Expression Profiling of a Population Exposed to a Range of Benzene Levels
Cliona M. McHale, Luoping Zhang, Qing Lan, Roel Vermeulen, Guilan Li, Alan E. Hubbard, Kristin E. Porter, Reuben Thomas, Christopher J. Portier, Min Shen, Stephen M. Rappaport, Songnian Yin, Martyn T. Smith, Nathaniel Rothman
Environ Health Perspect. 2011 May; 119(5): 628–640. Published online 2010 December 13. doi: 10.1289/ehp.1002546
PMCID:
PMC3094412
Abstract Full Text PDF–470K
ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-work
Gregor Warsow, Boris Greber, Steffi SI Falk, Clemens Harder, Marcin Siatkowski, Sandra Schordan, Anup Som, Nicole Endlich, Hans Schöler, Dirk Repsilber, Karlhans Endlich, Georg Fuellen
BMC Syst Biol. 2010; 4: 164. Published online 2010 November 30. doi: 10.1186/1752-0509-4-164
PMCID:
PMC3012047
Abstract Full Text PDF–2.0M Supplementary Material
Genetic and environmental pathways to complex diseases
Julia M Gohlke, Reuben Thomas, Yonqing Zhang, Michael C Rosenstein, Allan P Davis, Cynthia Murphy, Kevin G Becker, Carolyn J Mattingly, Christopher J Portier
BMC Syst Biol. 2009; 3: 46. Published online 2009 May 5. doi: 10.1186/1752-0509-3-46
PMCID:
PMC2680807
Abstract Full Text PDF–1.6M Supplementary Material
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