My NCBISign In
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Hideya Kawaji, Jessica Severin, Marina Lizio, Andrew Waterhouse, Shintaro Katayama, Katharine M Irvine, David A Hume, Alistair RR Forrest, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub
Genome Biol. 2009; 10(4): R40. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r40
PMCID:
PMC2688931
Abstract Full Text PDF–518K Supplementary Material

Is Cited by the Following 15 Articles in this Archive:

MYC Protein Inhibits Transcription of the MicroRNA Cluster MC-let-7a-1~let-7d via Noncanonical E-box
Zifeng Wang, Sheng Lin, Julia Jun Li, Zhenhua Xu, Hong Yao, Xiao Zhu, Dan Xie, Zan Shen, Johnny Sze, Kui Li, Gang Lu, Danny Tat-Ming Chan, Wai Sang Poon, Hsiang-fu Kung, Marie Chia-mi Lin
J Biol Chem. 2011 November 18; 286(46): 39703–39714. Published online 2011 September 8. doi: 10.1074/jbc.M111.293126
PMCID:
PMC3220549
Free in PMC on 2012/11/18
The plausible reason why the length of 5' untranslated region is unrelated to organismal complexity
Chun-Hsi Chen, Hsuan-Yu Lin, Chia-Lin Pan, Feng-Chi Chen
BMC Res Notes. 2011; 4: 312. Published online 2011 August 27. doi: 10.1186/1756-0500-4-312
PMCID:
PMC3224463
Abstract Full Text PDF–626K Supplementary Material
Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts
D Perna, G Fagà, A Verrecchia, M M Gorski, I Barozzi, V Narang, J Khng, K C Lim, W-K Sung, R Sanges, E Stupka, T Oskarsson, A Trumpp, C-L Wei, H Müller, B Amati
Oncogene. 2012 March 29; 31(13): 1695–1709. Published online 2011 August 22. doi: 10.1038/onc.2011.359
PMCID:
PMC3324106
Abstract Full Text PDF–930K Supplementary Material
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data
Chia-Hung Chien, Yi-Ming Sun, Wen-Chi Chang, Pei-Yun Chiang-Hsieh, Tzong-Yi Lee, Wei-Chih Tsai, Jorng-Tzong Horng, Ann-Ping Tsou, Hsien-Da Huang
Nucleic Acids Res. 2011 November; 39(21): 9345–9356. Published online 2011 August 5. doi: 10.1093/nar/gkr604
PMCID:
PMC3241639
Abstract Full Text PDF–5.3M Supplementary Material
Inactivation of promoter 1B of APC causes partial gene silencing: evidence for a significant role of the promoter in regulation and causative of familial adenomatous polyposis
A Rohlin, Y Engwall, K Fritzell, K Göransson, A Bergsten, Z Einbeigi, M Nilbert, P Karlsson, J Björk, M Nordling
Oncogene. 2011 December 15; 30(50): 4977–4989. Published online 2011 June 6. doi: 10.1038/onc.2011.201
PMCID:
PMC3240859
Abstract Full Text PDF–874K Supplementary Material
Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level
Elizabeth A. Rach, Deborah R. Winter, Ashlee M. Benjamin, David L. Corcoran, Ting Ni, Jun Zhu, Uwe Ohler
PLoS Genet. 2011 January; 7(1): e1001274. Published online 2011 January 13. doi: 10.1371/journal.pgen.1001274
PMCID:
PMC3020932
Abstract Full Text PDF–3.1M Supplementary Material
Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma
Chiara Braconi, Nicola Valeri, Takayuki Kogure, Pierluigi Gasparini, Nianyuan Huang, Gerard J. Nuovo, Luigi Terracciano, Carlo M. Croce, Tushar Patel
Proc Natl Acad Sci U S A. 2011 January 11; 108(2): 786–791. Published online 2010 December 27. doi: 10.1073/pnas.1011098108
PMCID:
PMC3021052
Abstract Full Text PDF–1.1M Supplementary Material
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Hideya Kawaji, Jessica Severin, Marina Lizio, Alistair R. R. Forrest, Erik van Nimwegen, Michael Rehli, Kate Schroder, Katharine Irvine, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub
Nucleic Acids Res. 2011 January; 39(Database issue): D856–D860. Published online 2010 November 11. doi: 10.1093/nar/gkq1112
PMCID:
PMC3013704
Abstract Full Text PDF–378K
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq
Hao Sun, Jiejun Wu, Priyankara Wickramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim H.-M. Huang, Ramana V. Davuluri
Nucleic Acids Res. 2011 January; 39(1): 190–201. Published online 2010 September 14. doi: 10.1093/nar/gkq775
PMCID:
PMC3017616
Abstract Full Text PDF–4.5M Supplementary Material
Identification of cis-Regulatory Elements in the Mammalian Genome: The cREMaG Database
Marcin Piechota, Michal Korostynski, Ryszard Przewlocki
PLoS One. 2010; 5(8): e12465. Published online 2010 August 31. doi: 10.1371/journal.pone.0012465
PMCID:
PMC2930848
Abstract Full Text PDF–288K Supplementary Material
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level
Philippe Rocca-Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris Taylor, Kimberly Begley, Dawn Field, Stephen Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna-Assunta Sansone
Bioinformatics. 2010 September 15; 26(18): 2354–2356. Published online 2010 August 2. doi: 10.1093/bioinformatics/btq415
PMCID:
PMC2935443
Abstract Full Text PDF–184K
A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers
Francesca De Santa, Iros Barozzi, Flore Mietton, Serena Ghisletti, Sara Polletti, Betsabeh Khoramian Tusi, Heiko Muller, Jiannis Ragoussis, Chia-Lin Wei, Gioacchino Natoli
PLoS Biol. 2010 May; 8(5): e1000384. Published online 2010 May 11. doi: 10.1371/journal.pbio.1000384
PMCID:
PMC2867938
Abstract Full Text PDF–1.0M Supplementary Material
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhattacharyya, Francisco A Perez, Sharmistha Pal, Ramana V Davuluri
BMC Bioinformatics. 2010; 11(Suppl 1): S65. Published online 2010 January 18. doi: 10.1186/1471-2105-11-S1-S65
PMCID:
PMC3009539
Abstract Full Text PDF–904K
Probe-Level Analysis of Expression Microarrays Characterizes Isoform-Specific Degradation during Mouse Oocyte Maturation
Jesse Salisbury, Keith W. Hutchison, Karen Wigglesworth, John J. Eppig, Joel H. Graber
PLoS One. 2009; 4(10): e7479. Published online 2009 October 16. doi: 10.1371/journal.pone.0007479
PMCID:
PMC2759528
Abstract Full Text PDF–640K Supplementary Material
Regulation of Non-Coding RNA Networks in the Nervous System—What’s the REST of the Story?
Irfan A. Qureshi, Mark F. Mehler
Neurosci Lett. Author manuscript; available in PMC 2010 December 4.
Published in final edited form as: Neurosci Lett. 2009 December 4; 466(2): 73–80. Published online 2009 August 11. doi: 10.1016/j.neulet.2009.07.093
PMCID:
PMC2767456
Abstract Full Text PDF–77K
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