My NCBISign In
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
Jessica Severin, Andrew M Waterhouse, Hideya Kawaji, Timo Lassmann, Erik van Nimwegen, Piotr J Balwierz, Michiel JL de Hoon, David A Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten O Daub, Alistair RR Forrest
Genome Biol. 2009; 10(4): R39. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r39
PMCID:
PMC2688930
Abstract Full Text PDF–566K Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Greg von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
J Biomed Semantics. 2011; 2: 4. Published online 2011 August 2. doi: 10.1186/2041-1480-2-4
PMCID:
PMC3170566
Abstract Full Text PDF–2.1M
The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression
Yunfei Wang, Jingjing Chen, Guifeng Wei, Housheng He, Xiaopeng Zhu, Tengfei Xiao, Jiao Yuan, Bo Dong, Shunmin He, Geir Skogerbø, Runsheng Chen
Nucleic Acids Res. 2011 July; 39(12): 5203–5214. Published online 2011 March 4. doi: 10.1093/nar/gkr102
PMCID:
PMC3130273
Abstract Full Text PDF–1.5M Supplementary Material
The in silico macrophage: toward a better understanding of inflammatory disease
Peter Ghazal, Steven Watterson, Kevin Robertson, David C Kluth
Genome Med. 2011; 3(1): 4. Published online 2011 January 22. doi: 10.1186/gm218
PMCID:
PMC3092089
Abstract Full Text PDF–777K
MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data
Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Priyankara Wickramasinghe, Ramana V. Davuluri
Nucleic Acids Res. 2011 January; 39(Database issue): D92–D97. Published online 2010 November 20. doi: 10.1093/nar/gkq1171
PMCID:
PMC3013732
Abstract Full Text PDF–4.5M
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Hideya Kawaji, Jessica Severin, Marina Lizio, Alistair R. R. Forrest, Erik van Nimwegen, Michael Rehli, Kate Schroder, Katharine Irvine, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub
Nucleic Acids Res. 2011 January; 39(Database issue): D856–D860. Published online 2010 November 11. doi: 10.1093/nar/gkq1112
PMCID:
PMC3013704
Abstract Full Text PDF–378K
Transcriptional regulation of mammalian miRNA genes
Brian C. Schanen, Xiaoman Li
Genomics. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Genomics. 2011 January; 97(1): 1–6. Published online 2010 October 23. doi: 10.1016/j.ygeno.2010.10.005
PMCID:
PMC3019299
Abstract Full Text PDF–318K
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
A. Maxwell Burroughs, Yoshinari Ando, Michiel J.L. de Hoon, Yasuhiro Tomaru, Takahiro Nishibu, Ryo Ukekawa, Taku Funakoshi, Tsutomu Kurokawa, Harukazu Suzuki, Yoshihide Hayashizaki, Carsten O. Daub
Genome Res. 2010 October; 20(10): 1398–1410. doi: 10.1101/gr.106054.110
PMCID:
PMC2945189
Abstract Full Text PDF–1.5M
Tissue-Specific and Ubiquitous Expression Patterns from Alternative Promoters of Human Genes
Edwin Jacox, Valer Gotea, Ivan Ovcharenko, Laura Elnitski
PLoS One. 2010; 5(8): e12274. Published online 2010 August 18. doi: 10.1371/journal.pone.0012274
PMCID:
PMC2923625
Abstract Full Text PDF–2.1M Supplementary Material
Association Rule Based Similarity Measures for the Clustering of Gene Expression Data
Prerna Sethi, Sathya Alagiriswamy
Open Med Inform J. 2010; 4: 63–73. Published online 2010 May 28. doi: 10.2174/1874431101004010063
PMCID:
PMC3096052
Abstract Full Text PDF–3.2M
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David S. Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole
Nucleic Acids Res. 2010 January; 38(Database issue): D75–D80. Published online 2010 January. doi: 10.1093/nar/gkp902
PMCID:
PMC2808995
Abstract Full Text PDF–5.3M
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Hideya Kawaji, Jessica Severin, Marina Lizio, Andrew Waterhouse, Shintaro Katayama, Katharine M Irvine, David A Hume, Alistair RR Forrest, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub
Genome Biol. 2009; 10(4): R40. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r40
PMCID:
PMC2688931
Abstract Full Text PDF–518K Supplementary Material
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk