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Transcriptional features of genomic regulatory blocks
Altuna Akalin, David Fredman, Erik Arner, Xianjun Dong, Jan Christian Bryne, Harukazu Suzuki, Carsten O Daub, Yoshihide Hayashizaki, Boris Lenhard
Genome Biol. 2009; 10(4): R38. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r38
PMCID:
PMC2688929
Abstract Full Text PDF–729K Supplementary Material

Is Cited by the Following 10 Articles in this Archive:

Genomic Hypomethylation in the Human Germline Associates with Selective Structural Mutability in the Human Genome
Jian Li, R. Alan Harris, Sau Wai Cheung, Cristian Coarfa, Mira Jeong, Margaret A. Goodell, Lisa D. White, Ankita Patel, Sung-Hae Kang, Chad Shaw, A. Craig Chinault, Tomasz Gambin, Anna Gambin, James R. Lupski, Aleksandar Milosavljevic
PLoS Genet. 2012 May; 8(5): e1002692. Published online 2012 May 17. doi: 10.1371/journal.pgen.1002692
PMCID:
PMC3355074
Abstract Full Text PDF–1.0M Supplementary Material
Genomic features and computational identification of human microRNAs under long-range developmental regulation
Ying Sheng, Christopher Previti
BMC Genomics. 2011; 12: 270. Published online 2011 May 27. doi: 10.1186/1471-2164-12-270
PMCID:
PMC3123655
Abstract Full Text PDF–731K Supplementary Material
Functional Relevance of CpG Island Length for Regulation of Gene Expression
Navin Elango, Soojin V. Yi
Genetics. 2011 April; 187(4): 1077–1083. doi: 10.1534/genetics.110.126094
PMCID:
PMC3070517
Abstract Full Text PDF–1.3M
Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions
Christian Rödelsperger, Gao Guo, Mateusz Kolanczyk, Angelika Pletschacher, Sebastian Köhler, Sebastian Bauer, Marcel H. Schulz, Peter N. Robinson
Nucleic Acids Res. 2011 April; 39(7): 2492–2502. Published online 2010 November 24. doi: 10.1093/nar/gkq1081
PMCID:
PMC3074119
Abstract Full Text PDF–348K Supplementary Material
A unique H3K4me2 profile marks tissue-specific gene regulation
Aleksandra Pekowska, Touati Benoukraf, Pierre Ferrier, Salvatore Spicuglia
Genome Res. 2010 November; 20(11): 1493–1502. doi: 10.1101/gr.109389.110
PMCID:
PMC2963813
Abstract Full Text PDF–1.1M
The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity
Deborah I. Ritter, Qiang Li, Dennis Kostka, Katherine S. Pollard, Su Guo, Jeffrey H. Chuang
Mol Biol Evol. 2010 October; 27(10): 2322–2332. Published online 2010 May 21. doi: 10.1093/molbev/msq128
PMCID:
PMC3107594
Abstract Full Text PDF–866K Supplementary Material
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
Eric Soler, Charlotte Andrieu-Soler, Ernie de Boer, Jan Christian Bryne, Supat Thongjuea, Ralph Stadhouders, Robert-Jan Palstra, Mary Stevens, Christel Kockx, Wilfred van IJcken, Jun Hou, Christine Steinhoff, Erikjan Rijkers, Boris Lenhard, Frank Grosveld
Genes Dev. 2010 February 1; 24(3): 277–289. doi: 10.1101/gad.551810
Correction in:
Genes Dev. 2010 March 15; 24(6): 623.
PMCID:
PMC2811829
Abstract Full Text PDF–1.7M Correction
CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
Christian Rödelsperger, Christoph Dieterich
PLoS One. 2010; 5(1): e8861. Published online 2010 January 28. doi: 10.1371/journal.pone.0008861
PMCID:
PMC2812507
Abstract Full Text PDF–253K Supplementary Material
CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses
Helge G. Roider, Boris Lenhard, Aditi Kanhere, Stefan A. Haas, Martin Vingron
Nucleic Acids Res. 2009 October; 37(19): 6305–6315. Published online 2009 October. doi: 10.1093/nar/gkp682
PMCID:
PMC2770660
Abstract Full Text PDF–8.3M Supplementary Material
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes
Xianjun Dong, David Fredman, Boris Lenhard
Genome Biol. 2009; 10(8): R86. Published online 2009 August 21. doi: 10.1186/gb-2009-10-8-r86
PMCID:
PMC2745767
Abstract Full Text PDF–1.3M Supplementary Material
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