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Transcriptional features of genomic regulatory blocks
Altuna Akalin, David Fredman, Erik Arner, Xianjun Dong, Jan Christian Bryne, Harukazu Suzuki, Carsten O Daub, Yoshihide Hayashizaki, Boris Lenhard
Genome Biol. 2009; 10(4): R38. Published online 2009 April 19. doi: 10.1186/gb-2009-10-4-r38
PMCID:
PMC2688929
Abstract Full Text PDF–729K Supplementary Material
 Is Cited by the Following 8 Articles in this Archive:
Genomic features and computational identification of human microRNAs under long-range developmental regulation
Ying Sheng, Christopher Previti
BMC Genomics. 2011; 12: 270. Published online 2011 May 27. doi: 10.1186/1471-2164-12-270
PMCID:
PMC3123655
Abstract Full Text PDF–731K Supplementary Material
Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions
Christian Rödelsperger, Gao Guo, Mateusz Kolanczyk, Angelika Pletschacher, Sebastian Köhler, Sebastian Bauer, Marcel H. Schulz, Peter N. Robinson
Nucleic Acids Res. 2011 April; 39(7): 2492–2502. Published online 2010 November 24. doi: 10.1093/nar/gkq1081
PMCID:
PMC3074119
Abstract Full Text PDF–348K Supplementary Material
A unique H3K4me2 profile marks tissue-specific gene regulation
Aleksandra Pekowska, Touati Benoukraf, Pierre Ferrier, Salvatore Spicuglia
Genome Res. 2010 November; 20(11): 1493–1502. doi: 10.1101/gr.109389.110
PMCID:
PMC2963813
Abstract Full Text PDF–1.1M
The Importance of Being Cis: Evolution of Orthologous Fish and Mammalian Enhancer Activity
Deborah I. Ritter, Qiang Li, Dennis Kostka, Katherine S. Pollard, Su Guo, Jeffrey H. Chuang
Mol Biol Evol. 2010 October; 27(10): 2322–2332. Published online 2010 May 21. doi: 10.1093/molbev/msq128
PMCID:
PMC3107594
Abstract Full Text PDF–866K Supplementary Material
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation
Eric Soler, Charlotte Andrieu-Soler, Ernie de Boer, Jan Christian Bryne, Supat Thongjuea, Ralph Stadhouders, Robert-Jan Palstra, Mary Stevens, Christel Kockx, Wilfred van IJcken, Jun Hou, Christine Steinhoff, Erikjan Rijkers, Boris Lenhard, Frank Grosveld
Genes Dev. 2010 February 1; 24(3): 277–289. doi: 10.1101/gad.551810
Correction in:
Genes Dev. 2010 March 15; 24(6): 623.
PMCID:
PMC2811829
Abstract Full Text PDF–1.7M Correction
CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
Christian Rödelsperger, Christoph Dieterich
PLoS One. 2010; 5(1): e8861. Published online 2010 January 28. doi: 10.1371/journal.pone.0008861
PMCID:
PMC2812507
Abstract Full Text PDF–253K Supplementary Material
CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses
Helge G. Roider, Boris Lenhard, Aditi Kanhere, Stefan A. Haas, Martin Vingron
Nucleic Acids Res. 2009 October; 37(19): 6305–6315. Published online 2009 October. doi: 10.1093/nar/gkp682
PMCID:
PMC2770660
Abstract Full Text PDF–8.3M Supplementary Material
Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes
Xianjun Dong, David Fredman, Boris Lenhard
Genome Biol. 2009; 10(8): R86. Published online 2009 August 21. doi: 10.1186/gb-2009-10-8-r86
PMCID:
PMC2745767
Abstract Full Text PDF–1.3M Supplementary Material
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