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EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
Christoph Bock, Konstantin Halachev, Joachim Büch, Thomas Lengauer
Genome Biol. 2009; 10(2): R14. Published online 2009 February 10. doi: 10.1186/gb-2009-10-2-r14
PMCID:
PMC2688269
Abstract Full Text PDF–777K
 Is Cited by the Following 9 Articles in this Archive:
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
Sébastien A. Smallwood, Shin-ichi Tomizawa, Felix Krueger, Nico Ruf, Natasha Carli, Anne Segonds-Pichon, Shun Sato, Kenichiro Hata, Simon R. Andrews, Gavin Kelsey
Nat Genet. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: Nat Genet. 2011 June 26; 43(8): 811–814. doi: 10.1038/ng.864
PMCID:
PMC3146050
Abstract Full Text PDF–1.1M Supplementary Material
Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines
Christoph Bock, Evangelos Kiskinis, Griet Verstappen, Hongcang Gu, Gabriella Boulting, Zachary D. Smith, Michael Ziller, Gist F. Croft, Mackenzie W. Amoroso, Derek H. Oakley, Andreas Gnirke, Kevin Eggan, Alexander Meissner
Cell. Author manuscript; available in PMC 2012 February 4.
Published in final edited form as: Cell. 2011 February 4; 144(3): 439–452. doi: 10.1016/j.cell.2010.12.032
PMCID:
PMC3063454
Abstract Full Text PDF–3.3M Supplementary Material
The Genomic HyperBrowser: inferential genomics at the sequence level
Geir K Sandve, Sveinung Gundersen, Halfdan Rydbeck, Ingrid K Glad, Lars Holden, Marit Holden, Knut Liestøl, Trevor Clancy, Egil Ferkingstad, Morten Johansen, Vegard Nygaard, Eivind Tøstesen, Arnoldo Frigessi, Eivind Hovig
Genome Biol. 2010; 11(12): R121. Published online 2010 December 23. doi: 10.1186/gb-2010-11-12-r121
PMCID:
PMC3046481
Abstract Full Text PDF–1.4M Supplementary Material
Processing and analyzing ChIP-seq data: from short reads to regulatory interactions
Marion Leleu, Grégory Lefebvre, Jacques Rougemont
Brief Funct Genomics. 2010 December; 9(5-6): 466–476. Published online 2010 December 22. doi: 10.1093/bfgp/elq022
PMCID:
PMC3080774
Abstract Full Text PDF–557K
seqMINER: an integrated ChIP-seq data interpretation platform
Tao Ye, Arnaud R. Krebs, Mohamed-Amin Choukrallah, Celine Keime, Frederic Plewniak, Irwin Davidson, Laszlo Tora
Nucleic Acids Res. 2011 March; 39(6): e35. Published online 2010 December 21. doi: 10.1093/nar/gkq1287
PMCID:
PMC3064796
Abstract Full Text PDF–2.0M Supplementary Material
Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
Lukas Chavez, Justyna Jozefczuk, Christina Grimm, Jörn Dietrich, Bernd Timmermann, Hans Lehrach, Ralf Herwig, James Adjaye
Genome Res. 2010 October; 20(10): 1441–1450. doi: 10.1101/gr.110114.110
PMCID:
PMC2945193
Abstract Full Text PDF–1.4M
Genome-wide DNA methylation analysis in cohesin mutant human cell lines
Jinglan Liu, Zhe Zhang, Masashige Bando, Takehiko Itoh, Matthew A. Deardorff, Jennifer R. Li, Dinah Clark, Maninder Kaur, Kondo Tatsuro, Antonie D. Kline, Celia Chang, Hugo Vega, Laird G. Jackson, Nancy B. Spinner, Katsuhiko Shirahige, Ian D. Krantz
Nucleic Acids Res. 2010 September; 38(17): 5657–5671. Published online 2010 May 6. doi: 10.1093/nar/gkq346
PMCID:
PMC2943628
Abstract Full Text PDF–1.9M Supplementary Material
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
Hongcang Gu, Christoph Bock, Tarjei S. Mikkelsen, Natalie Jäger, Zachary D. Smith, Eleni Tomazou, Andreas Gnirke, Eric S. Lander, Alexander Meissner
Nat Methods. Author manuscript; available in PMC 2010 August 1.
Published in final edited form as: Nat Methods. 2010 February; 7(2): 133–136. Published online 2010 January 10. doi: 10.1038/nmeth.1414
PMCID:
PMC2860480
Abstract Full Text PDF–1.0M Supplementary Material
MethMarker: user-friendly design and optimization of gene-specific DNA methylation assays
Peter Schüffler, Thomas Mikeska, Andreas Waha, Thomas Lengauer, Christoph Bock
Genome Biol. 2009; 10(10): R105. Published online 2009 October 5. doi: 10.1186/gb-2009-10-10-r105
PMCID:
PMC2784320
Abstract Full Text PDF–1.2M Supplementary Material
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