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Measuring the activity of BioBrick promoters using an in vivo reference standard
Jason R Kelly, Adam J Rubin, Joseph H Davis, Caroline M Ajo-Franklin, John Cumbers, Michael J Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy
J Biol Eng. 2009; 3: 4. Published online 2009 March 20. doi: 10.1186/1754-1611-3-4
PMCID:
PMC2683166
Abstract Full Text PDF–485K Supplementary Material

Is Cited by the Following 23 Articles in this Archive:

Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca
Karsten Temme, Dehua Zhao, Christopher A. Voigt
Proc Natl Acad Sci U S A. 2012 May 1; 109(18): 7085–7090. Published online 2012 April 16. doi: 10.1073/pnas.1120788109
PMCID:
PMC3345007
Free in PMC on 2012/11/01
Characterization of an inducible promoter in different DNA copy number conditions
Susanna Zucca, Lorenzo Pasotti, Giuliano Mazzini, Maria Gabriella Cusella De Angelis, Paolo Magni
BMC Bioinformatics. 2012; 13(Suppl 4): S11. Published online 2012 March 28. doi: 10.1186/1471-2105-13-S4-S11
PMCID:
PMC3314568
Abstract Full Text PDF–1018K Supplementary Material
SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains
Kenneth Evan Thompson, Caleb J. Bashor, Wendell A. Lim, Amy E. Keating
ACS Synth Biol. 2012 April 20; 1(4): 118–129. Published online 2012 February 2. doi: 10.1021/sb200015u
PMCID:
PMC3339576
Abstract Full Text PDF–5.9M Supplementary Material
Parts plus pipes: synthetic biology approaches to metabolic engineering
Patrick M. Boyle, Pamela A. Silver
Metab Eng. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: Metab Eng. 2012 May; 14(3): 223–232. Published online 2011 October 25. doi: 10.1016/j.ymben.2011.10.003
PMCID:
PMC3293987
Free in PMC on 2013/05/01
A Biobrick Library for Cloning Custom Eukaryotic Plasmids
Marco Constante, Raik Grünberg, Mark Isalan
PLoS One. 2011; 6(8): e23685. Published online 2011 August 25. doi: 10.1371/journal.pone.0023685
PMCID:
PMC3161993
Abstract Full Text PDF–728K Supplementary Material
Computational design of synthetic regulatory networks from a genetic library to characterize the designability of dynamical behaviors
Guillermo Rodrigo, Javier Carrera, Alfonso Jaramillo
Nucleic Acids Res. 2011 November; 39(20): e138. Published online 2011 August 24. doi: 10.1093/nar/gkr616
PMCID:
PMC3203596
Abstract Full Text PDF–5.2M Supplementary Material
Standard Biological Parts Knowledgebase
Michal Galdzicki, Cesar Rodriguez, Deepak Chandran, Herbert M. Sauro, John H. Gennari
PLoS One. 2011; 6(2): e17005. Published online 2011 February 24. doi: 10.1371/journal.pone.0017005
PMCID:
PMC3044748
Abstract Full Text PDF–1.0M Supplementary Material
Introduction of customized inserts for streamlined assembly and optimization of BioBrick synthetic genetic circuits
Julie E Norville, Ratmir Derda, Saurabh Gupta, Kelly A Drinkwater, Angela M Belcher, Andres E Leschziner, Thomas F Knight, Jr
J Biol Eng. 2010; 4: 17. Published online 2010 December 20. doi: 10.1186/1754-1611-4-17
PMCID:
PMC3022552
Abstract Full Text PDF–2.4M Supplementary Material
Rational design of modular circuits for gene transcription: A test of the bottom-up approach
Francesca Ceroni, Simone Furini, Emanuele Giordano, Silvio Cavalcanti
J Biol Eng. 2010; 4: 14. Published online 2010 November 11. doi: 10.1186/1754-1611-4-14
PMCID:
PMC2993646
Abstract Full Text PDF–825K Supplementary Material
Designing and engineering evolutionary robust genetic circuits
Sean C Sleight, Bryan A Bartley, Jane A Lieviant, Herbert M Sauro
J Biol Eng. 2010; 4: 12. Published online 2010 November 1. doi: 10.1186/1754-1611-4-12
PMCID:
PMC2991278
Abstract Full Text PDF–2.3M Supplementary Material
Engineering scalable biological systems
Timothy K Lu
Bioeng Bugs. 2010 Nov-Dec; 1(6): 378–384. doi: 10.4161/bbug.1.6.13086
PMCID:
PMC3056087
Abstract Full Text PDF–978K
Quantification of the physiochemical constraints on the export of spider silk proteins by Salmonella type III secretion
Daniel M Widmaier, Christopher A Voigt
Microb Cell Fact. 2010; 9: 78. Published online 2010 October 25. doi: 10.1186/1475-2859-9-78
PMCID:
PMC2987917
Abstract Full Text PDF–1.6M Supplementary Material
Design, construction and characterization of a set of insulated bacterial promoters
Joseph H. Davis, Adam J. Rubin, Robert T. Sauer
Nucleic Acids Res. 2011 February; 39(3): 1131–1141. Published online 2010 September 15. doi: 10.1093/nar/gkq810
PMCID:
PMC3035448
Abstract Full Text PDF–520K
Synthetic biology: A foundation for multi-scale molecular biology
Adam G Bower, Maria K McClintock, Stephen S Fong
Bioeng Bugs. 2010 Sep-Oct; 1(5): 309–312. doi: 10.4161/bbug.1.5.12391
PMCID:
PMC3037580
Abstract Full Text PDF–586K
A synthetic three-color scaffold for monitoring genetic regulation and noise
Robert Sidney Cox, III, Mary J Dunlop, Michael B Elowitz
J Biol Eng. 2010; 4: 10. Published online 2010 July 21. doi: 10.1186/1754-1611-4-10
PMCID:
PMC2918530
Abstract Full Text PDF–1.0M Supplementary Material
Strategies for protein synthetic biology
Raik Grünberg, Luis Serrano
Nucleic Acids Res. 2010 May; 38(8): 2663–2675. Published online 2010 April 10. doi: 10.1093/nar/gkq139
PMCID:
PMC2860127
Abstract Full Text PDF–4.2M
In-Fusion BioBrick assembly and re-engineering
Sean C. Sleight, Bryan A. Bartley, Jane A. Lieviant, Herbert M. Sauro
Nucleic Acids Res. 2010 May; 38(8): 2624–2636. Published online 2010 April 10. doi: 10.1093/nar/gkq179
PMCID:
PMC2860134
Abstract Full Text PDF–4.3M
Design and characterization of molecular tools for a Synthetic Biology approach towards developing cyanobacterial biotechnology
Hsin-Ho Huang, Daniel Camsund, Peter Lindblad, Thorsten Heidorn
Nucleic Acids Res. 2010 May; 38(8): 2577–2593. Published online 2010 March 17. doi: 10.1093/nar/gkq164
PMCID:
PMC2860132
Abstract Full Text PDF–8.5M
Building blocks for protein interaction devices
Raik Grünberg, Tony S. Ferrar, Almer M. van der Sloot, Marco Constante, Luis Serrano
Nucleic Acids Res. 2010 May; 38(8): 2645–2662. Published online 2010 March 9. doi: 10.1093/nar/gkq152
PMCID:
PMC2860130
Abstract Full Text PDF–4.4M Supplementary Material
Gemini, a Bifunctional Enzymatic and Fluorescent Reporter of Gene Expression
Lance Martin, Austin Che, Drew Endy
PLoS One. 2009; 4(11): e7569. Published online 2009 November 4. doi: 10.1371/journal.pone.0007569
PMCID:
PMC2766624
Abstract Full Text PDF–307K Supplementary Material
TinkerCell: modular CAD tool for synthetic biology
Deepak Chandran, Frank T Bergmann, Herbert M Sauro
J Biol Eng. 2009; 3: 19. Published online 2009 October 29. doi: 10.1186/1754-1611-3-19
PMCID:
PMC2776589
Abstract Full Text PDF–1.4M Supplementary Material
Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars
Yizhi Cai, Matthew W. Lux, Laura Adam, Jean Peccoud
PLoS Comput Biol. 2009 October; 5(10): e1000529. Published online 2009 October 9. doi: 10.1371/journal.pcbi.1000529
PMCID:
PMC2748682
Abstract Full Text PDF–591K Supplementary Material
Grand challenges for biological engineering
Jeong-Yeol Yoon, Mark R Riley
J Biol Eng. 2009; 3: 16. Published online 2009 September 22. doi: 10.1186/1754-1611-3-16
PMCID:
PMC2754978
Abstract Full Text PDF–202K
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