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An unstable head-rod junction may promote folding into the compact off-state conformation of regulated myosins 1Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, Massachusetts 02454-9110 USA 2School of Life Sciences, Jawaharlal Nehru University, New Delhi, India 3Department of Biochemistry, Eötvös Loránd University, H-1117 Budapest, Pázmány P. s. 1/C, Hungary Corresponding author: Carolyn Cohen: email: ccohen/at/brandeis.edu, Phone: 1-781-736-2446; Fax: 1-781-736-2419 4YY: current address: Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109 USA 5These authors contributed equally to this work The publisher's final edited version of this article is available at J Mol Biol.SUMMARY The N-terminal region of myosin’s rod-like subfragment 2 (S2) joins the two heads of this dimeric molecule and is key to its function. Previously, a crystal structure of this predominantly coiled-coil region was determined for a short fragment (51 residues, plus leucine zipper) of the scallop striated muscle myosin isoform. Here, the N-terminal 10-14 residues were found to be disordered. We have now determined the structure of the same scallop peptide in three additional crystal environments. In each of two of these structures, improved order has now allowed visualization of the entire N-terminus in one chain of the dimeric peptide. We have also compared the melting temperatures of this scallop S2 peptide and analogous peptides from three other isoforms. Taken together, these studies, along with examination of sequences, point to a diminished stability of the N-terminal region of S2 in regulated myosins, compared to those myosins whose regulation is thin filament-linked. It seems plain that this isoform-specific instability promotes the off-state conformation of the heads in regulated myosins. We also discuss how myosin isoforms with varied thermal stabilities share the basic capacity to transmit force efficiently in order to produce contraction in their on states. Keywords: Alpha-helical coiled coil, Myosin Subfragment 2, Off State, X-ray diffraction, Thermal Stability INTRODUCTION Conventional myosin (myosin II) is the motor that drives muscle contraction 1, and whose mechanism exemplifies the transduction pathway of an allosteric protein 2. The molecule consists of a long two-chain alpha-helical coiled-coil rod whose C-terminal region assembles to form the thick filament backbone, and whose N-terminal subfragment-2 (S2) rod region swings out to allow the two attached subfragment-1 (S1) heads (Fig. 1a
The nature of the junction between myosin’s two S1 heads and its S2 rod appears to be critical both for the efficient transmission of force production during the contractile cycle 10 as well as for the conformational changes in vertebrate smooth and scallop striated muscles necessary for their regulation 11; 12; 13. It is the apparent capacity of this junction to adopt different structures, as well as the intrinsic marginal stability of these conformations, that appear to be essential for function. Although relatively high-resolution and complete crystal structures of scallop S1 and the lever arm (2; 14; 15; 16; 17; 18) on one side of this junction and of a short N-terminal peptide construct of scallop S2 19 on the other side have been determined, an atomic description of the intact head-rod junction in any of its states has yet to be determined. Moreover, the N-terminal 10-14 residues of the scallop S2 peptide construct, i.e. those residues of S2 closest to the location of the head-rod junction, were found to be disordered 19, but have recently been visualized in a long S2 peptide from a non-regulated human cardiac myosin 20. Here we report new crystal forms of the scallop S2 peptide construct, in which this N-terminal region is now relatively ordered, as well as thermal stability experiments of this S2 peptide and analogous constructs from three other myosin isoforms. These studies, together with sequence comparisons, point to a diminished stability of the N-terminal region of S2 in regulated myosins compared to those myosins whose regulation is thin filament linked. These results help provide a physical basis for the formation of the compact off-state conformation observed for regulated myosins. Other key structural aspects of S2 are also discussed, including an improved definition of the head-tail junction, the significance of two-fold symmetry in S2 structures, and consideration of structural stabilization of this junction in order to transmit tension. RESULTS Overall Structure of Scallop S2N51 We have now determined the structure of the 51 pairs of residues of scallop myosin’s rod (S2) adjacent to the head-rod (S1-S2) junction in a total of five different crystal packing environments (Fig. 1A
The new information, provided by one of the P21 chains and one of the C2 chains, is that all of the residues at the N-terminus of a scallop S2 chain can now be seen (Fig. 2 For the rest of the scallop S2N51 coiled coil, the structures in the new P21 and C2 space groups generally confirm and extend many of the observations made previously for the molecule in the P212121 space group 19, especially concerning the flexibility and stability of the structure. Some of the features found among the four chains of the P212121 space group and indicative of scallop S2’s flexibility appear less pronounced among the 6 independent chains of the new P21 and C2 space groups. In addition to the improved order at the N-terminus, there is somewhat decreased variability in the conformations of the a-position lysines and in the bending of the coiled coil (see fig. 2
Comparative thermal stability studies of different isoforms using circular dichroism and inspection of sequences and structure Previous observations using fragments of different lengths have suggested that scallop S2, including its N-terminal region, is particularly unstable relative to other isoforms 19; 20; 27. We have now applied circular dichroism spectroscopy to chimeric fragments of equal length corresponding to S2N51 (with the attached leucine zipper) from four different isoforms of myosin, including scallop, to compare thermal stabilities quantitatively (Fig. 3b These comparative thermal stability results for S2N51 (scallop < vertebrate smooth< vertebrate skeletal< human cardiac) are well correlated with certain features in their sequences (fig. 3c DISCUSSION Functional comparison of S2’s from non-regulated and regulated myosins: the off state The role of S2 in regulated myosins appears to be different from that in myosins whose regulation is thin filament linked. The low level of stability in the N-terminal region of regulated myosins described above may be an important factor in their capacity to adopt the off-state conformation. This conformation has been observed at low resolution in electron microscopic studies of two-dimensional crystals or individual molecules of heavy meromyosin and myosin from vertebrate smooth muscle 11; 32; 33 and more recently in the relaxed thick filaments of invertebrate (tarantula) striated muscle 34, both of which are regulated by phosphorylation of the RLC. A similar conformation is probable for the off-state of scallop myosin 12; 13; 35, which is regulated by direct binding of calcium to the first EF-hand motif of the ELC near the ELC/RLC interface. This conformation of the dimeric molecule in the off state is quite distinctive and is marked by two major and related features: a compact structure, and an asymmetric interaction between the two heads (Fig. 1d Electron microscopic studies, although at low resolution, suggest that near the head-rod junction, the heads bend back towards the rod to permit the compact conformation 34. (An untwisting of the coiled coil near the head-rod junction has also been suggested from normal mode analysis 36.) Our current X-ray crystallographic, sequence, and circular dichroism studies described above all indicate a relatively unstable N-terminal region of S2 in regulated myosins. Moreover, it appears that the span of the heavy chain through the head-rod junction, especially in scallop myosin, may form a (near-)alpha-helical conformation only when bound to the RLC. Note that, as described above, the mechanism of activation in regulated myosins involves the binding of ions (Ca2+ in the case of scallop myosin and Pi in the case of vertebrate smooth-muscle myosin) to or near the RLC, and it is possible that structural effects on this light chain by the release of the ions during inactivation may be transmitted to the adjacent head-rod junction. These destabilizing features of S2 in regulated myosin at or near its head-rod junction may facilitate the bending of this region and the formation of the off-state conformation. In contrast, as shown above, the N-terminal region of S2 appears to be relatively stable in non-regulated myosins such as vertebrate skeletal and especially cardiac isoforms, and would probably adopt highly bent conformations fairly infrequently. These myosins are indeed observed in electron microscopic and single particle image processing studies to adopt the compact “bent-back” conformation less frequently than do regulated myosins (R. Craig, personal communication and 37). In fact, these skeletal and cardiac myosins have been observed to form the compact head-head interactions in high numbers only in the presence of specialized agents such as blebbistatin (R. Craig, personal communication and 37), which binds in the 50 kDa cleft of the MD and blocks ATPase activity 38; 39. The asymmetric interactions between the two heads of regulated myosins sterically blocks the actin binding site on one head and restricts the capacity of the other head to undergo the power stroke. In this compact off-state conformation, the part of S2 about 60-80 residues from the head-rod junction appears to make contact with the head region 33; 34. The recent structure of a long S2 from non-regulated human cardiac myosin shows axial staggering between the two alpha helices in the N-terminal 40 residues (Fig. 4 Additional functional aspects of order and disorder near the head-rod junction: the on state Weakness at or near the N-terminus of the S2 coiled coil, evident for residues 838-845 in each of the S2N51 peptide structures determined, is an important aspect of myosin’s design 19. In addition to its potential role in promoting the compact off state of regulated myosin (discussed above), instability in this region may also promote optimal mechanical performance in the on state (see 10). Nevertheless, the entire span of any isoform of S2, including the residues immediately adjacent to the head-rod junction, must also be capable of adopting a rigid enough conformation to transmit force efficiently in order to produce contraction in its on state 20; 40. (A recent modeling study of smooth-muscle myosin also suggests that the head–rod junction maintains an alpha-helical nature, albeit not in a coiled coil, during the transition from the on to the off state 36.) The crystallographic results show an alpha-helical structure immediately adjacent to the head-rod junction (from residue 838) in S2 fragments from regulated (current scallop structures) as well as in a non-regulated (human cardiac 20) myosins. In intact native myosin, the alpha-helical conformation of these S2 residues closest to the head-rod junction, i.e. residues 838-841, may be further promoted by the local stabilization of (alpha) helical conformations of the main chain on both sides of this segment: As described above (and see fig. 3a We have described above a link between the isoform-specific differences for S2 near the head-rod junction and different functional requirements between isoforms to form a compact conformation in the off state. But the sequence differences between isoforms would also be expected to influence the properties of the head-rod junction in the active state as well. Perhaps the low level of stability in scallop myosin, compared to say vertebrate smooth-muscle myosin (fig. 3b Coda Myosin is designed to function in a number of conformational states, and different isoforms (now more than about 25 classes 42) have evolved for various specialized kinds of activity. Within the large myosin II class, the actin-binding and enzymatic “head” (S1) of the molecule displays a number of such conformational variations – especially in the lever arm. Here we have shown that the S2 region of the tail of the molecule nearest the head is also specialized in structure. One of the key states of myosin is the “resting” or “off” state. Recent low-resolution structural results for this state have shown a “folded-back” compact conformation of the two heads, which are bound to one another in an asymmetric pattern. Atomic resolution (crystallographic) structures are now being sought in order to define the precise head-to-head interactions that produce this state, and to visualize, as well, the role of the S2 region and the rest of the rod in promoting or reducing the stability of this state. MATERIALS AND METHODS Crystallographic Studies The chimeric peptide that we have crystallized (Fig. 1 Orthorhombic crystals at 4°C were obtained from many conditions. We used that obtained by adding 2 μl of protein solution ((4 mg/ml) in 30 mM MOPS buffer, pH 7.2, 40 mM NaCl, 2 mM NaN3) to 2 μl of 25% PEG 3350, 6% MPD, and equilibrating against 15% PEG 3350, 3.6% MPD, 18 mM MOPS, 24 mM NaCl. They were cryoprotected in 25% PEG 3350, 24 mM NaCl, 18 mM MOPS (pH 7.2) and 20% MPD. Data from a single crystal were collected at 100K to 3.0 Å resolution at the Brookhaven National Laboratory synchrotron (beamline X25, λ=0.9792 Å). Data were reduced with the HKL data processing system 43. The previous scallop S2 structure (19; pdb id code: 1NKN) was positioned into these data using PHASER 44 and refined using CNS_SOLVE version 1.1 45. Minor rebuilding was performed using the program O version 8.0 46. The poorer resolution of these orthorhombic data compared to those obtained previously limits the reliability of any detailed comparison of their structures. Nevertheless, it is clear that the overall features of its structure, in particular the complete disorder at the N-terminal region (see text), remain the same for the orthorhombic crystals produced at 4°C and 16°C. Crystals belonging to the monoclinic space group P21 were obtained by mixing 2 μl of protein solution (as above) with 2 μl of 25% PEG 3350, 50 mM NH4I and equilibrating against 1 ml of 17.5% PEG 3350, 35 mM NH4I, 28 mM NaCl, 2 mM NaN3, 20 mM MOPS, pH 6.2. Harvested crystals were cryoprotected in 25.5% PEG 3350 and 15% glycerol. Data from a single crystal were collected at 100K to a resolution of 1.95 Å resolution at the Brookhaven National Laboratory synchrotron (beamline x26c, λ= 0.9791 Å). Data were reduced with the HKL data processing system version 1.97.2 43. There are two molecules in asymmetric unit. The structure was solved by the molecular replacement method using AMoRe 47 and the previous scallop S2 structure (pdb id code: 1NKN) was used as a search model. The structure was rebuilt in program O version 8.0 46 and refined to 2.3 Å resolution with CNS_SOLVE version 1.1 45. As described in the text, the order at the N-terminus is somewhat improved over that observed in the orthorhombic crystal structures. This structure has been deposited into the Protein Data Bank (PDB code: 3BAT). Crystals belonging to the monoclinic space group C2 were obtained by adding 1.5 μl of protein solution (as above) to 3 μl of 16.6% PEG 3350, 4.6% MPD, 13 mM NaCl, 2 mM NaN3, 10 mM MOPS (pH 7.2) and equilibrating against 15% PEG 3350, 4.2% MPD, 18 mM MOPS, 24 mM NaCl. They were cryoprotected in 25% PEG3350, 24 mM NaCl, 18 mM MOPS (pH 7.2) and 20% MPD. Data from a single crystal were collected at 100K to 2.3 Å resolution at the Cornell High Energy Synchrotron Source (beamline A1a, λ = 0.9764 Å). Data were reduced with the software package HKL version 1.98.143. There is one molecule in asymmetric unit. The structure was solved by molecular replacement method using AMoRe 47 and the previous scallop S2 structure (pdb code: 1NKN) was used as model. The structure was rebuilt in O version 8.0 46 and refined with CNS_SOLVE version 1.0 45. Among the different crystal forms, this structure shows the best order at the N terminus (see text and Table 1 legend). This region in the C2 space group appears to be stabilized by hydrophobic contacts between symmetry related B chains involving proline 835 and leucine 837. This structure has been deposited into the Protein Data Bank (PDB code: 3BAS). Melting temperature determination Circular dichroism spectroscopy was applied to compare thermal stability of scallop S2 near the head-rod junction to that from other regulated and non-regulated myosins (Fig. 3b Acknowledgments This work was supported by grants to CC from the National Institute of Arthritis and Musculoskeletal and Skin Diseases of the NIH (AR017346) and to LN by Hungarian Scientific Research Fund (OTKA) grants K61784 and TS049812. We thank Leslie Leinwand for supplying the skeletal and cardiac myosin clones, Hirofumi Onishi for the smooth myosin clone, the staffs at the Brookhaven National Laboratory and Cornell synchrotrons for assistance with data collection, and Kathy Trybus and Roger Craig for a critical reading the manuscript. Footnotes Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. References 1. Huxley HE. The mechanism of muscular contraction. Science. 1969;164:1356–65. [PubMed] 2. Yang Y, Gourinath S, Kovács M, Nyitray L, Reutzel R, Himmel DM, O’Neall-Hennessey E, Reshetnikova L, Szent-Györgyi AG, Brown JH, Cohen C. Rigor-like Structures from Muscle Myosins Reveal Key Mechanical Elements in the Transduction Pathways of This Allosteric Motor. Structure. 2007;15:553–564. [PubMed] 3. 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Science. 1969 Jun 20; 164(886):1356-65.
[Science. 1969]Structure. 2007 May; 15(5):553-64.
[Structure. 2007]Science. 1993 Jul 2; 261(5117):50-8.
[Science. 1993]Cell. 1999 May 14; 97(4):459-70.
[Cell. 1999]Adv Protein Chem. 2005; 71():161-93.
[Adv Protein Chem. 2005]Biophys J. 2001 Apr; 80(4):1900-4.
[Biophys J. 2001]J Mol Biol. 2003 Jun 20; 329(5):963-72.
[J Mol Biol. 2003]J Mol Biol. 2001 Mar 16; 307(1):137-47.
[J Mol Biol. 2001]Structure. 2007 May; 15(5):553-64.
[Structure. 2007]Structure. 1996 Jan 15; 4(1):21-32.
[Structure. 1996]Protein Sci. 1998 Jan; 7(1):21-38.
[Protein Sci. 1998]Science. 1988 Jun 17; 240(4859):1648-52.
[Science. 1988]Structure. 2003 Dec; 11(12):1621-7.
[Structure. 2003]Structure. 1996 Jan 15; 4(1):21-32.
[Structure. 1996]J Biol Chem. 2005 Dec 16; 280(50):41458-64.
[J Biol Chem. 2005]Nature. 2003 Jul 17; 424(6946):341-5.
[Nature. 2003]J Mol Biol. 1996 Mar 1; 256(3):407-16.
[J Mol Biol. 1996]J Struct Biol. 2002 Jan-Feb; 137(1-2):54-64.
[J Struct Biol. 2002]Nature. 2003 Jul 17; 424(6946):341-5.
[Nature. 2003]Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17713-7.
[Proc Natl Acad Sci U S A. 2006]Biochem Biophys Res Commun. 1998 Nov 27; 252(3):595-601.
[Biochem Biophys Res Commun. 1998]Proc Natl Acad Sci U S A. 1997 Jan 7; 94(1):48-52.
[Proc Natl Acad Sci U S A. 1997]Nature. 2003 Jul 17; 424(6946):341-5.
[Nature. 2003]J Struct Biol. 2002 Jan-Feb; 137(1-2):65-72.
[J Struct Biol. 2002]J Mol Biol. 2002 May 3; 318(3):901-10.
[J Mol Biol. 2002]J Mol Biol. 1995 Dec 8; 254(4):761-70.
[J Mol Biol. 1995]Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17713-7.
[Proc Natl Acad Sci U S A. 2006]J Mol Biol. 2003 Jun 20; 329(5):963-72.
[J Mol Biol. 2003]Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8):4361-6.
[Proc Natl Acad Sci U S A. 2001]Nature. 2005 Aug 25; 436(7054):1195-9.
[Nature. 2005]J Mol Biol. 2001 Mar 16; 307(1):137-47.
[J Mol Biol. 2001]Nature. 2005 Aug 25; 436(7054):1195-9.
[Nature. 2005]J Mol Biol. 2005 Jan 28; 345(4):837-54.
[J Mol Biol. 2005]J Biol Chem. 2004 Aug 20; 279(34):35557-63.
[J Biol Chem. 2004]Nat Struct Mol Biol. 2005 Apr; 12(4):378-9.
[Nat Struct Mol Biol. 2005]Nature. 2005 Aug 25; 436(7054):1195-9.
[Nature. 2005]Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17713-7.
[Proc Natl Acad Sci U S A. 2006]Nature. 2003 Jul 17; 424(6946):341-5.
[Nature. 2003]Biophys J. 2001 Apr; 80(4):1900-4.
[Biophys J. 2001]Proc Natl Acad Sci U S A. 2006 Nov 21; 103(47):17713-7.
[Proc Natl Acad Sci U S A. 2006]Proc Natl Acad Sci U S A. 2007 Jun 12; 104(24):9994-9.
[Proc Natl Acad Sci U S A. 2007]J Mol Biol. 2005 Jan 28; 345(4):837-54.
[J Mol Biol. 2005]J Mol Biol. 1996 Mar 1; 256(3):407-16.
[J Mol Biol. 1996]J Mol Biol. 2001 Mar 16; 307(1):137-47.
[J Mol Biol. 2001]Protein Sci. 2007 Sep; 16(9):1887-95.
[Protein Sci. 2007]Genome Biol. 2007; 8(9):R196.
[Genome Biol. 2007]Nature. 2003 Jul 17; 424(6946):341-5.
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