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A comprehensive analysis of prognostic signatures reveals the high predictive capacity of the Proliferation, Immune response and RNA splicing modules in breast cancer
Fabien Reyal, Martin H van Vliet, Nicola J Armstrong, Hugo M Horlings, Karin E de Visser, Marlen Kok, Andrew E Teschendorff, Stella Mook, Laura van 't Veer, Carlos Caldas, Remy J Salmon, Marc J van de Vijver, Lodewyk FA Wessels
Breast Cancer Res. 2008; 10(6): R93. Published online 2008 November 13. doi: 10.1186/bcr2192
PMCID:
PMC2656909
Abstract Full Text PDF–1.5M Supplementary Material

Is Cited by the Following 24 Articles in this Archive:

Comparison of data-merging methods with SVM attribute selection and classification in breast cancer gene expression
Vitoantonio Bevilacqua, Paolo Pannarale, Mirko Abbrescia, Claudia Cava, Angelo Paradiso, Stefania Tommasi
BMC Bioinformatics. 2012; 13(Suppl 7): S9. Published online 2012 May 8. doi: 10.1186/1471-2105-13-S7-S9
PMCID:
PMC3348047
Abstract Full Text PDF–2.3M
A Critical Evaluation of Network and Pathway-Based Classifiers for Outcome Prediction in Breast Cancer
Christine Staiger, Sidney Cadot, Raul Kooter, Marcus Dittrich, Tobias Müller, Gunnar W. Klau, Lodewyk F. A. Wessels
PLoS One. 2012; 7(4): e34796. Published online 2012 April 27. doi: 10.1371/journal.pone.0034796
PMCID:
PMC3338754
Abstract Full Text PDF–1.2M Supplementary Material
The Influence of Feature Selection Methods on Accuracy, Stability and Interpretability of Molecular Signatures
Anne-Claire Haury, Pierre Gestraud, Jean-Philippe Vert
PLoS One. 2011; 6(12): e28210. Published online 2011 December 21. doi: 10.1371/journal.pone.0028210
PMCID:
PMC3244389
Abstract Full Text PDF–1023K
External Validation of Adjuvant! Online Breast Cancer Prognosis Tool. Prioritising Recommendations for Improvement
David Hajage, Yann de Rycke, Marc Bollet, Alexia Savignoni, Martial Caly, Jean-Yves Pierga, Hugo M. Horlings, Marc J. Van de Vijver, Anne Vincent-Salomon, Brigitte Sigal-Zafrani, Claire Senechal, Bernard Asselain, Xavier Sastre, Fabien Reyal
PLoS One. 2011; 6(11): e27446. Published online 2011 November 8. doi: 10.1371/journal.pone.0027446
PMCID:
PMC3210791
Abstract Full Text PDF–252K
Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome
David Venet, Jacques E. Dumont, Vincent Detours
PLoS Comput Biol. 2011 October; 7(10): e1002240. Published online 2011 October 20. doi: 10.1371/journal.pcbi.1002240
PMCID:
PMC3197658
Abstract Full Text PDF–443K Supplementary Material
A clinically relevant gene signature in triple negative and basal-like breast cancer
Achim Rody, Thomas Karn, Cornelia Liedtke, Lajos Pusztai, Eugen Ruckhaeberle, Lars Hanker, Regine Gaetje, Christine Solbach, Andre Ahr, Dirk Metzler, Marcus Schmidt, Volkmar Müller, Uwe Holtrich, Manfred Kaufmann
Breast Cancer Res. 2011; 13(5): R97. Published online 2011 October 6. doi: 10.1186/bcr3035
PMCID:
PMC3262210
Abstract Full Text PDF–3.6M Supplementary Material
Therapeutic Cancer Vaccines and Translating Vaccinomics Science to the Global Health Clinic: Emerging Applications Toward Proof of Concept
Megan M. O'Meara, Mary L. Disis
OMICS. 2011 September; 15(9): 579–588. doi: 10.1089/omi.2010.0149
PMCID:
PMC3166179
Free in PMC on 2012/09/01
The Role of RBM25/LUC7L3 in Abnormal Cardiac Sodium Channel Splicing Regulation in Human Heart Failure
Ge Gao, An Xie, Shu-Ching Huang, Anyu Zhou, Jianhua Zhang, Amanda M. Herman, Sassan Ghassemzadeh, Euy-Myoung Jeong, Srinivasan Kasturirangan, Mihai Raicu, Michael A. Sobieski, II, Geetha Bhat, Antone Tatooles, Edward J. Benz, Jr, Timothy J. Kamp, Samuel C. Dudley, Jr
Circulation. Author manuscript; available in PMC 2012 September 6.
Published in final edited form as: Circulation. 2011 September 6; 124(10): 1124–1131. Published online 2011 August 22. doi: 10.1161/CIRCULATIONAHA.111.044495
PMCID:
PMC3172047
Free in PMC on 2012/09/06
The Molecular Subtype Classification Is a Determinant of Sentinel Node Positivity in Early Breast Carcinoma
Fabien Reyal, Roman Rouzier, Berenice Depont-Hazelzet, Marc A. Bollet, Jean-Yves Pierga, Severine Alran, Remy J. Salmon, Virginie Fourchotte, Anne Vincent-Salomon, Xavier Sastre-Garau, Martine Antoine, Serge Uzan, Brigitte Sigal-Zafrani, Yann De Rycke
PLoS One. 2011; 6(5): e20297. Published online 2011 May 31. doi: 10.1371/journal.pone.0020297
PMCID:
PMC3105053
Abstract Full Text PDF–415K
GOBO: Gene Expression-Based Outcome for Breast Cancer Online
Markus Ringnér, Erik Fredlund, Jari Häkkinen, Åke Borg, Johan Staaf
PLoS One. 2011; 6(3): e17911. Published online 2011 March 21. doi: 10.1371/journal.pone.0017911
PMCID:
PMC3061871
Abstract Full Text PDF–971K Supplementary Material
Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?
Yotam Drier, Eytan Domany
PLoS One. 2011; 6(3): e17795. Published online 2011 March 14. doi: 10.1371/journal.pone.0017795
PMCID:
PMC3056769
Abstract Full Text PDF–107K Supplementary Material
Combining Gene Signatures Improves Prediction of Breast Cancer Survival
Xi Zhao, Einar Andreas Rødland, Therese Sørlie, Bjørn Naume, Anita Langerød, Arnoldo Frigessi, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Ole Christian Lingjærde
PLoS One. 2011; 6(3): e17845. Published online 2011 March 10. doi: 10.1371/journal.pone.0017845
PMCID:
PMC3053398
Abstract Full Text PDF–1.6M Supplementary Material
A Signature Inferred from Drosophila Mitotic Genes Predicts Survival of Breast Cancer Patients
Christian Damasco, Antonio Lembo, Maria Patrizia Somma, Maurizio Gatti, Ferdinando Di Cunto, Paolo Provero
PLoS One. 2011; 6(2): e14737. Published online 2011 February 28. doi: 10.1371/journal.pone.0014737
PMCID:
PMC3046113
Abstract Full Text PDF–931K Supplementary Material
Gene Expression Profiles from Formalin Fixed Paraffin Embedded Breast Cancer Tissue Are Largely Comparable to Fresh Frozen Matched Tissue
Lorenza Mittempergher, Jorma J. de Ronde, Marja Nieuwland, Ron M. Kerkhoven, Iris Simon, Emiel J. Th. Rutgers, Lodewyk F. A. Wessels, Laura J. Van't Veer
PLoS One. 2011; 6(2): e17163. Published online 2011 February 11. doi: 10.1371/journal.pone.0017163
PMCID:
PMC3037966
Abstract Full Text PDF–2.2M Supplementary Material
Building prognostic models for breast cancer patients using clinical variables and hundreds of gene expression signatures
Cheng Fan, Aleix Prat, Joel S Parker, Yufeng Liu, Lisa A Carey, Melissa A Troester, Charles M Perou
BMC Med Genomics. 2011; 4: 3. Published online 2011 January 9. doi: 10.1186/1755-8794-4-3
PMCID:
PMC3025826
Abstract Full Text PDF–1.5M Supplementary Material
Molecular profiling currently offers no more than tumour morphology and basic immunohistochemistry
Britta Weigelt, Jorge S Reis-Filho
Breast Cancer Res. 2010; 12(Suppl 4): S5. Published online 2010 December 20. doi: 10.1186/bcr2734
PMCID:
PMC3005725
Full Text PDF–142K
Predicting prognosis of breast cancer with gene signatures: are we lost in a sea of data?
Takayuki Iwamoto, Lajos Pusztai
Genome Med. 2010; 2(11): 81. Published online 2010 November 12. doi: 10.1186/gm202
PMCID:
PMC3016623
Abstract Full Text PDF–211K
Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules
Andrew E Teschendorff, Sergio Gomez, Alex Arenas, Dorraya El-Ashry, Marcus Schmidt, Mathias Gehrmann, Carlos Caldas
BMC Cancer. 2010; 10: 604. Published online 2010 November 4. doi: 10.1186/1471-2407-10-604
PMCID:
PMC2991308
Abstract Full Text PDF–1.9M Supplementary Material
Genomic subtypes of breast cancer identified by array-comparative genomic hybridization display distinct molecular and clinical characteristics
Göran Jönsson, Johan Staaf, Johan Vallon-Christersson, Markus Ringnér, Karolina Holm, Cecilia Hegardt, Haukur Gunnarsson, Rainer Fagerholm, Carina Strand, Bjarni A Agnarsson, Outi Kilpivaara, Lena Luts, Päivi Heikkilä, Kristiina Aittomäki, Carl Blomqvist, Niklas Loman, Per Malmström, Håkan Olsson, Oskar Th Johannsson, Adalgeir Arason, Heli Nevanlinna, Rosa B Barkardottir, Åke Borg
Breast Cancer Res. 2010; 12(3): R42. Published online 2010 June 24. doi: 10.1186/bcr2596
PMCID:
PMC2917037
Abstract Full Text PDF–1.2M Supplementary Material
Prediction of breast cancer prognosis using gene set statistics provides signature stability and biological context
Gad Abraham, Adam Kowalczyk, Sherene Loi, Izhak Haviv, Justin Zobel
BMC Bioinformatics. 2010; 11: 277. Published online 2010 May 25. doi: 10.1186/1471-2105-11-277
PMCID:
PMC2895626
Abstract Full Text PDF–1.1M Supplementary Material
A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability
Herman MJ Sontrop, Perry D Moerland, René van den Ham, Marcel JT Reinders, Wim FJ Verhaegh
BMC Bioinformatics. 2009; 10: 389. Published online 2009 November 26. doi: 10.1186/1471-2105-10-389
PMCID:
PMC2789744
Abstract Full Text PDF–923K Supplementary Material
Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?
Haleh Yasrebi, Peter Sperisen, Viviane Praz, Philipp Bucher
PLoS One. 2009; 4(10): e7431. Published online 2009 October 23. doi: 10.1371/journal.pone.0007431
PMCID:
PMC2761544
Abstract Full Text PDF–645K Supplementary Material
Gene expression profiling integrated into network modelling reveals heterogeneity in the mechanisms of BRCA1 tumorigenesis
R Fernández-Ramires, X Solé, L De Cecco, G Llort, A Cazorla, N Bonifaci, M J Garcia, T Caldés, I Blanco, M Gariboldi, M A Pierotti, M A Pujana, J Benítez, A Osorio
Br J Cancer. 2009 October 20; 101(8): 1469–1480. Published online 2009 October 13. doi: 10.1038/sj.bjc.6605275
PMCID:
PMC2768459
Abstract Full Text PDF–1.4M Supplementary Material
Comparison of Prognostic Gene Profiles Using qRT-PCR in Paraffin Samples: A Retrospective Study in Patients with Early Breast Cancer
Enrique Espinosa, Iker Sánchez-Navarro, Angelo Gámez-Pozo, Álvaro Pinto Marin, David Hardisson, Rosario Madero, Andrés Redondo, Pilar Zamora, Belén San José Valiente, Marta Mendiola, Manuel González Barón, Juan Ángel Fresno Vara
PLoS One. 2009; 4(6): e5911. Published online 2009 June 15. doi: 10.1371/journal.pone.0005911
PMCID:
PMC2698956
Abstract Full Text PDF–331K Supplementary Material
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