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Singular value decomposition-based regression identifies activation of endogenous signaling pathways in vivo
Zhandong Liu, Min Wang, James V Alvarez, Megan E Bonney, Chien-chung Chen, Celina D'Cruz, Tien-chi Pan, Mahlet G Tadesse, Lewis A Chodosh
Genome Biol. 2008; 9(12): R180. Published online 2008 December 18. doi: 10.1186/gb-2008-9-12-r180
PMCID:
PMC2646284
Abstract Full Text PDF–2.5M Supplementary Material
 Is Cited by the Following 4 Articles in this Archive:
SIGNATURE: A workbench for gene expression signature analysis
Jeffrey T Chang, Michael L Gatza, Joseph E Lucas, William T Barry, Peyton Vaughn, Joseph R Nevins
BMC Bioinformatics. 2011; 12: 443. Published online 2011 November 14. doi: 10.1186/1471-2105-12-443
PMCID:
PMC3251189
Abstract Full Text PDF–1.1M
Gene set enrichment; a problem of pathways
Matthew N. Davies, Emma L. Meaburn, Leonard C. Schalkwyk
Brief Funct Genomics. 2010 December; 9(5-6): 385–390. Published online 2010 September 22. doi: 10.1093/bfgp/elq021
PMCID:
PMC3080747
Abstract Full Text PDF–84K
A gene expression signature of RAS pathway dependence predicts response to PI3K and RAS pathway inhibitors and expands the population of RAS pathway activated tumors
Andrey Loboda, Michael Nebozhyn, Rich Klinghoffer, Jason Frazier, Michael Chastain, William Arthur, Brian Roberts, Theresa Zhang, Melissa Chenard, Brian Haines, Jannik Andersen, Kumiko Nagashima, Cloud Paweletz, Bethany Lynch, Igor Feldman, Hongyue Dai, Pearl Huang, James Watters
BMC Med Genomics. 2010; 3: 26. Published online 2010 June 30. doi: 10.1186/1755-8794-3-26
PMCID:
PMC2911390
Abstract Full Text PDF–1.8M Supplementary Material
Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems
Michal Dabrowski, Norbert Dojer, Malgorzata Zawadzka, Jakub Mieczkowski, Bozena Kaminska
BMC Syst Biol. 2010; 4: 86. Published online 2010 June 17. doi: 10.1186/1752-0509-4-86
PMCID:
PMC2902439
Abstract Full Text PDF–1.5M Supplementary Material
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