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Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence
Daniel E Neafsey, Stephen F Schaffner, Sarah K Volkman, Daniel Park, Philip Montgomery, Danny A Milner, Jr, Amanda Lukens, David Rosen, Rachel Daniels, Nathan Houde, Joseph F Cortese, Erin Tyndall, Casey Gates, Nicole Stange-Thomann, Ousmane Sarr, Daouda Ndiaye, Omar Ndir, Soulyemane Mboup, Marcelo U Ferreira, Sandra do Lago Moraes, Aditya P Dash, Chetan E Chitnis, Roger C Wiegand, Daniel L Hartl, Bruce W Birren, Eric S Lander, Pardis C Sabeti, Dyann F Wirth
Genome Biol. 2008; 9(12): R171. Published online 2008 December 15. doi: 10.1186/gb-2008-9-12-r171
PMCID:
PMC2646275
Abstract Full Text PDF–671K Supplementary Material
 Is Cited by the Following 17 Articles in this Archive:
FORS-D Analysis in P. falciparum can Differentiate Classes of Genes Under Selection
Atish Kathpal, Balakota Reddy Patakottu, Swati Patankar
Evol Bioinform Online. 2011; 7: 21–29. Published online 2011 March 20. doi: 10.4137/EBO.S6609
PMCID:
PMC3072625
Abstract Full Text PDF–538K
High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum
Upeka Samarakoon, Allison Regier, Asako Tan, Brian A Desany, Brendan Collins, John C Tan, Scott J Emrich, Michael T Ferdig
BMC Genomics. 2011; 12: 116. Published online 2011 February 17. doi: 10.1186/1471-2164-12-116
PMCID:
PMC3055840
Abstract Full Text PDF–919K Supplementary Material
Population Genetics of GYPB and Association Study between GYPB*S/s Polymorphism and Susceptibility to P. falciparum Infection in the Brazilian Amazon
Eduardo Tarazona-Santos, Lilian Castilho, Daphne R. T. Amaral, Daiane C. Costa, Natália G. Furlani, Luciana W. Zuccherato, Moara Machado, Marion E. Reid, Mariano G. Zalis, Andréa R. Rossit, Sidney E. B. Santos, Ricardo L. Machado, Sara Lustigman
PLoS One. 2011; 6(1): e16123. Published online 2011 January 24. doi: 10.1371/journal.pone.0016123
PMCID:
PMC3026040
Abstract Full Text PDF–236K
How can we identify parasite genes that underlie antimalarial drug resistance?
Tim Anderson, Standwell Nkhoma, Andrea Ecker, David Fidock
Pharmacogenomics. Author manuscript; available in PMC 2011 November 1.
Published in final edited form as: Pharmacogenomics. 2011 January; 12(1): 59–85. doi: 10.2217/pgs.10.165
PMCID:
PMC3148835
Abstract Full Text PDF–1.7M
Genome scanning of Amazonian Plasmodium falciparum shows subtelomeric instability and clindamycin-resistant parasites
Neekesh V. Dharia, David Plouffe, Selina E.R. Bopp, Gonzalo E. González-Páez, Carmen Lucas, Carola Salas, Valeria Soberon, Badry Bursulaya, Tadeusz J. Kochel, David J. Bacon, Elizabeth A. Winzeler
Genome Res. 2010 November; 20(11): 1534–1544. doi: 10.1101/gr.105163.110
PMCID:
PMC2963817
Abstract Full Text PDF–694K
A novel multifunctional oligonucleotide microarray for Toxoplasma gondii
Amit Bahl, Paul H Davis, Michael Behnke, Florence Dzierszinski, Manjunatha Jagalur, Feng Chen, Dhanasekaran Shanmugam, Michael W White, David Kulp, David S Roos
BMC Genomics. 2010; 11: 603. Published online 2010 October 25. doi: 10.1186/1471-2164-11-603
PMCID:
PMC3017859
Abstract Full Text PDF–2.2M Supplementary Material
Long- and Short-Term Selective Forces on Malaria Parasite Genomes
Sanne Nygaard, Alexander Braunstein, Gareth Malsen, Stijn Van Dongen, Paul P. Gardner, Anders Krogh, Thomas D. Otto, Arnab Pain, Matthew Berriman, Jon McAuliffe, Emmanouil T. Dermitzakis, Daniel C. Jeffares
PLoS Genet. 2010 September; 6(9): e1001099. Published online 2010 September 9. doi: 10.1371/journal.pgen.1001099
PMCID:
PMC2936524
Abstract Full Text PDF–739K Supplementary Material
Allelic Diversity and Naturally Acquired Allele-Specific Antibody Responses to Plasmodium falciparum Apical Membrane Antigen 1 in Kenya
Faith H. A. Osier, Gareth D. Weedall, Federica Verra, Linda Murungi, Kevin K. A. Tetteh, Pete Bull, Bart W. Faber, Ed Remarque, Alan Thomas, Kevin Marsh, David J. Conway
Infect Immun. 2010 November; 78(11): 4625–4633. Published online 2010 August 23. doi: 10.1128/IAI.00576-10
PMCID:
PMC2976345
Abstract Full Text PDF–1.3M Supplementary Material
Genome-wide association studies in Plasmodium species
Bridget Penman, Caroline Buckee, Sunetra Gupta, Sean Nee
BMC Biol. 2010; 8: 90. Published online 2010 July 13. doi: 10.1186/1741-7007-8-90
PMCID:
PMC2903549
Abstract Full Text PDF–245K
Single-nucleotide polymorphism, linkage disequilibrium and geographic structure in the malaria parasite Plasmodium vivax: prospects for genome-wide association studies
Pamela Orjuela-Sánchez, Nadira D Karunaweera, Mônica da Silva-Nunes, Natal S da Silva, Kézia KG Scopel, Raquel M Gonçalves, Chanaki Amaratunga, Juliana M Sá, Duong Socheat, Rick M Fairhust, Sharmini Gunawardena, Thuraisamy Thavakodirasah, Gawrie LN Galapaththy, Rabindra Abeysinghe, Fumihiko Kawamoto, Dyann F Wirth, Marcelo U Ferreira
BMC Genet. 2010; 11: 65. Published online 2010 July 13. doi: 10.1186/1471-2156-11-65
PMCID:
PMC2910014
Abstract Full Text PDF–1.7M Supplementary Material
Recent Progress in Functional Genomic Research in Plasmodium falciparum
Jianbing Mu, Karl B Seydel, Adam Bates, Xin-Zhuan Su
Curr Genomics. 2010 June; 11(4): 279–286. doi: 10.2174/138920210791233081
PMCID:
PMC2930667
Abstract Full Text PDF–182K
GENETIC CHANGES DURING LABORATORY PROPAGATION: COPY NUMBER AT THE RETICULOCYTE BINDING PROTEIN 1 LOCUS OF PLASMODIUM FALCIPARUM
Shalini Nair, Standwell Nkhoma, François Nosten, Mayfong Mayxay, Neil French, Jim Whitworth, Tim Anderson
Mol Biochem Parasitol. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Mol Biochem Parasitol. 2010 August; 172(2): 145–148. Published online 2010 April 2. doi: 10.1016/j.molbiopara.2010.03.015
PMCID:
PMC2875377
Abstract Full Text PDF–518K Supplementary Material
Geographic Structuring of the Plasmodium falciparum Sarco(endo)plasmic Reticulum Ca2+ ATPase (PfSERCA) Gene Diversity
Ronan Jambou, Axel Martinelli, João Pinto, Simonetta Gribaldo, Eric Legrand, Makhtar Niang, Nimol Kim, Lim Pharath, Béatrice Volnay, Marie Therese Ekala, Christiane Bouchier, Thierry Fandeur, Pedro Berzosa, Agustin Benito, Isabel Dinis Ferreira, Cynthia Ferreira, Pedro Paulo Vieira, Maria das Graças Alecrim, Odile Mercereau-Puijalon, Pedro Cravo
PLoS One. 2010; 5(2): e9424. Published online 2010 February 25. doi: 10.1371/journal.pone.0009424
PMCID:
PMC2828472
Abstract Full Text PDF–370K Supplementary Material
Population genetic analysis of large sequence polymorphisms in Plasmodium falciparum blood-stage antigens
Ambroise D. Ahouidi, Amy K. Bei, Daniel E. Neafsey, Ousmane Sarr, Sarah Volkman, Dan Milner, Janet Cox-Singh, Marcelo U. Ferreira, Omar Ndir, Zul Premji, Souleymane Mboup, Manoj T. Duraisingh
Infect Genet Evol. Author manuscript; available in PMC 2011 March 1.
Published in final edited form as: Infect Genet Evol. 2010 March; 10(2): 200–206. Published online 2009 November 30. doi: 10.1016/j.meegid.2009.11.008
PMCID:
PMC2829370
Abstract Full Text PDF–164K Supplementary Material
Discovery, mechanisms of action and combination therapy of artemisinin
Liwang Cui, Xin-zhuan Su
Expert Rev Anti Infect Ther. Author manuscript; available in PMC 2010 August 1.
Published in final edited form as: Expert Rev Anti Infect Ther. 2009 October; 7(8): 999–1013. doi: 10.1586/eri.09.68
PMCID:
PMC2778258
Abstract Full Text PDF–566K
Population dynamics of genetically diverse Plasmodium falciparum lineages: community-based prospective study in rural Amazonia
P. ORJUELA-SÁNCHEZ, M. DA SILVA-NUNES, N. S. DA SILVA, K.K.G. SCOPEL, R. M. GONÇALVES, R. S. MALAFRONTE, M. U. FERREIRA
Parasitology. Author manuscript; available in PMC 2010 April 5.
Published in final edited form as: Parasitology. 2009 September; 136(10): 1097–1105. Published online 2009 July 27. doi: 10.1017/S0031182009990539
PMCID:
PMC2849677
Abstract Full Text PDF–802K
Case-Control Approach to Identify Plasmodium falciparum Polymorphisms Associated with Severe Malaria
Watcharee Chokejindachai, David J. Conway
PLoS ONE. 2009; 4(5): e5454. Published online 2009 May 6. doi: 10.1371/journal.pone.0005454
PMCID:
PMC2674215
Abstract Full Text PDF–342K Supplementary Material
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