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FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease
Rong Chen, Alex A Morgan, Joel Dudley, Tarangini Deshpande, Li Li, Keiichi Kodama, Annie P Chiang, Atul J Butte
Genome Biol. 2008; 9(12): R170. Published online 2008 December 5. doi: 10.1186/gb-2008-9-12-r170
PMCID:
PMC2646274
Abstract Full Text PDF–476K Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
Density based pruning for identification of differentially expressed genes from microarray data
Jianjun Hu, Jia Xu
BMC Genomics. 2010; 11(Suppl 2): S3. Published online 2010 November 2. doi: 10.1186/1471-2164-11-S2-S3
PMCID:
PMC2975422
Abstract Full Text PDF–603K
Generation of novel pharmacogenomic candidates in the response to methotrexate in juvenile idiopathic arthritis: correlation between gene expression and genotype
Halima Moncrieffe, Anne Hinks, Simona Ursu, Laura Kassoumeri, Angela Etheridge, Mike Hubank, Paul Martin, Tracey Weiler, David N Glass, Susan D. Thompson, Wendy Thomson, Lucy R Wedderburn
Pharmacogenet Genomics. Author manuscript; available in PMC 2011 November 1.
Published in final edited form as: Pharmacogenet Genomics. 2010 November; 20(11): 665–676. doi: 10.1097/FPC.0b013e32833f2cd0
PMCID:
PMC2963015
Abstract Full Text PDF–1.7M Supplementary Material
Analysis of Alzheimer's disease severity across brain regions by topological analysis of gene co-expression networks
Monika Ray, Weixiong Zhang
BMC Syst Biol. 2010; 4: 136. Published online 2010 October 6. doi: 10.1186/1752-0509-4-136
PMCID:
PMC2976747
Abstract Full Text PDF–373K Supplementary Material
Serious limitations of the QTL/Microarray approach for QTL gene discovery
Ricardo A Verdugo, Charles R Farber, Craig H Warden, Juan F Medrano
BMC Biol. 2010; 8: 96. Published online 2010 July 12. doi: 10.1186/1741-7007-8-96
PMCID:
PMC2919467
Abstract Full Text PDF–624K Supplementary Material
Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance
Bernie J. Daigle, Jr, Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman
PLoS Comput Biol. 2010 March; 6(3): e1000718. Published online 2010 March 26. doi: 10.1371/journal.pcbi.1000718
PMCID:
PMC2845644
Abstract Full Text PDF–873K Supplementary Material
Increasing Alternative Promoter Repertories Is Positively Associated with Differential Expression and Disease Susceptibility
Song Liu
PLoS One. 2010; 5(3): e9482. Published online 2010 March 1. doi: 10.1371/journal.pone.0009482
PMCID:
PMC2830428
Abstract Full Text PDF–203K Supplementary Material
Application of Gene Network Analysis Techniques Identifies AXIN1/PDIA2 and Endoglin Haplotypes Associated with Bicuspid Aortic Valve
Eric C. Wooten, Lakshmanan K. Iyer, Maria Claudia Montefusco, Alyson Kelley Hedgepeth, Douglas D. Payne, Navin K. Kapur, David E. Housman, Michael E. Mendelsohn, Gordon S. Huggins
PLoS One. 2010; 5(1): e8830. Published online 2010 January 21. doi: 10.1371/journal.pone.0008830
PMCID:
PMC2809109
Abstract Full Text PDF–1.1M Supplementary Material
Autoimmune Disease Classification by Inverse Association with SNP Alleles
Marina Sirota, Marc A. Schaub, Serafim Batzoglou, William H. Robinson, Atul J. Butte
PLoS Genet. 2009 December; 5(12): e1000792. Published online 2009 December 24. doi: 10.1371/journal.pgen.1000792
PMCID:
PMC2791168
Abstract Full Text PDF–409K Supplementary Material
Dynamism in gene expression across multiple studies
Alexander A. Morgan, Joel T. Dudley, Tarangini Deshpande, Atul J. Butte
Physiol Genomics. 2010 February; 40(3): 128–140. Published online 2009 November 17. doi: 10.1152/physiolgenomics.90403.2008
PMCID:
PMC2825768
Abstract Full Text
GWAS Meets Microarray: Are the Results of Genome-Wide Association Studies and Gene-Expression Profiling Consistent? Prostate Cancer as an Example
Ivan P. Gorlov, Gary E. Gallick, Olga Y. Gorlova, Christopher Amos, Christopher J. Logothetis
PLoS One. 2009; 4(8): e6511. Published online 2009 August 4. doi: 10.1371/journal.pone.0006511
PMCID:
PMC2714961
Abstract Full Text PDF–192K Supplementary Material
Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions
Soumya Raychaudhuri, Robert M. Plenge, Elizabeth J. Rossin, Aylwin C. Y. Ng, International Schizophrenia Consortium, Shaun M. Purcell, Pamela Sklar, Edward M. Scolnick, Ramnik J. Xavier, David Altshuler, Mark J. Daly
PLoS Genet. 2009 June; 5(6): e1000534. Published online 2009 June 26. doi: 10.1371/journal.pgen.1000534
PMCID:
PMC2694358
Abstract Full Text PDF–554K Supplementary Material
A Classifier-based approach to identify genetic similarities between diseases
Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou
Bioinformatics. 2009 June 15; 25(12): i21–i29. Published online 2009 May 27. doi: 10.1093/bioinformatics/btp226
PMCID:
PMC2687980
Abstract Full Text PDF–259K
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