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Network-based approaches for linking metabolism with environment
Sarath Chandra Janga, M Madan Babu
Genome Biol. 2008; 9(11): 239. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-239
PMCID:
PMC2614483
Abstract Full Text PDF–135K

Is Cited by the Following 7 Articles in this Archive:

Annotator: Post-processing Software for generating function-based signatures from quantitative mass spectrometry
Juliesta E. Sylvester, Tyler S. Bray, Stephen J. Kron
J Proteome Res. Author manuscript; available in PMC 2013 March 2.
Published in final edited form as: J Proteome Res. 2012 March 2; 11(3): 1521–1536. Published online 2012 February 3. doi: 10.1021/pr200460s
PMCID:
PMC3292622
Free in PMC on 2013/03/02
Structural correlations in bacterial metabolic networks
Sebastian Bernhardsson, Philip Gerlee, Ludvig Lizana
BMC Evol Biol. 2011; 11: 20. Published online 2011 January 20. doi: 10.1186/1471-2148-11-20
PMCID:
PMC3033826
Abstract Full Text PDF–777K Supplementary Material
PINT: Pathways INtegration Tool
Y.-T. Wang, Y.-H. Huang, Y.-C. Chen, C.-L. Hsu, U.-C. Yang
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W124–W131. Published online 2010 June 10. doi: 10.1093/nar/gkq499
PMCID:
PMC2896112
Abstract Full Text PDF–4.1M Supplementary Material
The large-scale organization of the bacterial network of ecological co-occurrence interactions
Shiri Freilich, Anat Kreimer, Isacc Meilijson, Uri Gophna, Roded Sharan, Eytan Ruppin
Nucleic Acids Res. 2010 July; 38(12): 3857–3868. Published online 2010 February 27. doi: 10.1093/nar/gkq118
PMCID:
PMC2896517
Abstract Full Text PDF–361K Supplementary Material
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species
Shiri Freilich, Anat Kreimer, Elhanan Borenstein, Uri Gophna, Roded Sharan, Eytan Ruppin
PLoS Comput Biol. 2010 February; 6(2): e1000690. Published online 2010 February 26. doi: 10.1371/journal.pcbi.1000690
PMCID:
PMC2829043
Abstract Full Text PDF–629K Supplementary Material
In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
Reed Taffs, John E Aston, Kristen Brileya, Zackary Jay, Christian G Klatt, Shawn McGlynn, Natasha Mallette, Scott Montross, Robin Gerlach, William P Inskeep, David M Ward, Ross P Carlson
BMC Syst Biol. 2009; 3: 114. Published online 2009 December 10. doi: 10.1186/1752-0509-3-114
PMCID:
PMC2799449
Abstract Full Text PDF–1.2M Supplementary Material
Metabolic-network-driven analysis of bacterial ecological strategies
Shiri Freilich, Anat Kreimer, Elhanan Borenstein, Nir Yosef, Roded Sharan, Uri Gophna, Eytan Ruppin
Genome Biol. 2009; 10(6): R61. Published online 2009 June 5. doi: 10.1186/gb-2009-10-6-r61
PMCID:
PMC2718495
Abstract Full Text PDF–209K Supplementary Material
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