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Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions
Evan S Snitkin, Aimée M Dudley, Daniel M Janse, Kaisheen Wong, George M Church, Daniel Segrè
Genome Biol. 2008; 9(9): R140. Published online 2008 September 22. doi: 10.1186/gb-2008-9-9-r140
PMCID:
PMC2592718
Abstract Full Text PDF–692K Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Nat Genet. 2011 May 29; 43(7): 656–662. doi: 10.1038/ng.846
PMCID:
PMC3125439
Abstract Full Text PDF–1.7M Supplementary Material
Impact of gene expression noise on organismal fitness and the efficacy of natural selection
Zhi Wang, Jianzhi Zhang
Proc Natl Acad Sci U S A. 2011 April 19; 108(16): E67–E76. Published online 2011 April 4. doi: 10.1073/pnas.1100059108
Includes additional comments & authors
PMCID:
PMC3080991
Abstract Full Text PDF–1.3M Supplementary Material
Epistatic Interaction Maps Relative to Multiple Metabolic Phenotypes
Evan S. Snitkin, Daniel Segrè
PLoS Genet. 2011 February; 7(2): e1001294. Published online 2011 February 10. doi: 10.1371/journal.pgen.1001294
PMCID:
PMC3037399
Abstract Full Text PDF–2.0M Supplementary Material
Environments that Induce Synthetic Microbial Ecosystems
Niels Klitgord, Daniel Segrè
PLoS Comput Biol. 2010 November; 6(11): e1001002. Published online 2010 November 18. doi: 10.1371/journal.pcbi.1001002
PMCID:
PMC2987903
Abstract Full Text PDF–939K Supplementary Material
Further developments towards a genome-scale metabolic model of yeast
Paul D Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pınar Pir, Chuan Lu, Neil Swainston, Warwick B Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J Stanford, Douglas B Kell, Ross D King, Stephen G Oliver, Robert D Stevens, Pedro Mendes
BMC Syst Biol. 2010; 4: 145. Published online 2010 October 28. doi: 10.1186/1752-0509-4-145
PMCID:
PMC2988745
Abstract Full Text PDF–597K Supplementary Material
Applications of genome-scale metabolic reconstructions
Matthew A Oberhardt, Bernhard Ø Palsson, Jason A Papin
Mol Syst Biol. 2009; 5: 320. Published online 2009 November 3. doi: 10.1038/msb.2009.77
PMCID:
PMC2795471
Abstract Full Text PDF–2.6M
Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli
Jie Yuan, Christopher D Doucette, William U Fowler, Xiao-Jiang Feng, Matthew Piazza, Herschel A Rabitz, Ned S Wingreen, Joshua D Rabinowitz
Mol Syst Biol. 2009; 5: 302. Published online 2009 August 18. doi: 10.1038/msb.2009.60
PMCID:
PMC2736657
Abstract Full Text PDF–2.4M Supplementary Material
A framework for evolutionary systems biology
Laurence Loewe
BMC Syst Biol. 2009; 3: 27. Published online 2009 February 24. doi: 10.1186/1752-0509-3-27
PMCID:
PMC2663779
Abstract Full Text PDF–1.0M
Why Is the Correlation between Gene Importance and Gene Evolutionary Rate So Weak?
Zhi Wang, Jianzhi Zhang
PLoS Genet. 2009 January; 5(1): e1000329. Published online 2009 January 9. doi: 10.1371/journal.pgen.1000329
PMCID:
PMC2605560
Abstract Full Text PDF–353K Supplementary Material
Metabolic Network Model of a Human Oral Pathogen
Varun Mazumdar, Evan S. Snitkin, Salomon Amar, Daniel Segrè
J Bacteriol. 2009 January; 191(1): 74–90. Published online 2008 October 17. doi: 10.1128/JB.01123-08
PMCID:
PMC2612419
Abstract Full Text PDF–2.8M Supplementary Material
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