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Can Fam Physician. Nov 2008; 54(11): 1572–1573.e5.
PMCID: PMC2592335

Language: English | French

So many databases, such little clarity

Searching the literature for the topic aboriginal
Len Kelly, MD MClinSci CCFP FCFP
Family physician and an Associate Professor of Family Medicine at the Northern Ontario School of Medicine and McMaster University in Sioux Lookout, Ont

ABSTRACT

OBJECTIVE

To describe the scope, content, and organization of commonly used medical databases and search strategies, using a search of the topic aboriginal to illustrate the various ways the topic is covered in each of the databases.

DESIGN

Comparison of literature searches.

METHOD

Seven common medical databases were searched using all the MeSH terms that are permutations of aboriginal. A secondary analysis using the “remove duplicates” function in Ovid was done to identify articles specific to each database.

MAIN OUTCOME MEASURES

Number of articles found by each search.

RESULTS

Searching by MeSH terms often produces very different information from that found when searching by text word. A unique term, such as Ojibway, is best found with a text word search. A more general term, such as Aborigines, is best searched by subject using a MeSH term. Many databases can be searched through Ovid and might all use different MeSH terms for the same reference. PubMed default searches that use MeSH terms and text words simultaneously often produce very large numbers of articles. In searching for North American aboriginal using MeSH terms, MEDLINE and PubMed produced the most references, followed by Healthstar. Calculating distinct “all aboriginal” references in EMBASE, Healthstar, and PsycINFO indicated that MEDLINE produced nearly all the articles found in Healthstar. In fact, MEDLINE alone produced 88% of the articles found in MEDLINE and EMBASE and 79% of the articles found in MEDLINE and PsycINFO.

CONCLUSION

Although several researchers and medical librarians have noted that MEDLINE and EMBASE are quite distinct databases, suggesting both need to be searched for a complete search, we did not find that to be the case for the topic aboriginal. The results of this study demonstrate that using MEDLINE produces the most extensive coverage of literature on the topic aboriginal. To fully capture the complete body of available literature on other subjects might require searches of many databases, depending on the topic.

RÉSUMÉ

OBJECTIF

Décrire l’étendue, le contenu et l’organisation des bases de données et des stratégies de recherche couramment utilisées en médecine, au moyen d’une recherche sur le sujet aboriginal (en anglais), afin de montrer les façons différentes de couvrir ce sujet dans chaque base de données.

TYPE D’ÉTUDE

Comparaison de revues de littérature.

MÉTHODE

On a consulté 7 bases de données médicales courantes en utilisant tous les équivalents du terme MeSH aboriginal. Un analyse secondaire a été effectuée à l’aide de la fonction « éliminer les doubles » dans Ovid afin d’identifier les articles spécifiques à chaque base de données.

PRINCIPAL PARAMÈTRE MESURÉ

Nombre d’articles identifiés par chaque recherche.

RÉSULTATS

Une recherche par termes MeSH produit souvent des résultats très différents de ceux résultant d’une recherche par mots courants. Avec un mot unique comme Ojibway, il est préférable d’utiliser un mot courant. Avec un mot plus général comme aboriginal, une recherche par sujet avec des termes MeSH est préférable. Ovid permet une recherche dans plusieurs bases de données, lesquelles peuvent toutes utiliser des termes MeSH différents pour la même recherche. Les recherches PubMed par défaut qui utilisent simultanément des termes MeSH et des termes courants produisent souvent un très grand nombre d’articles. Dans une recherche sur North American aboriginal avec des termes MeSH, MEDLINE et PubMed ont produit le plus grand nombre de références, suivis par Healthstar. Le décompte des références distinctes pour « all aboriginal » obtenues avec EMBASE, Healthstar et PsycINFO indique que MEDLINE a produit la presque totalité des articles repérés par Healthstar. En fait, à lui seul, MEDLINE a produit 88% de tous les articles repérés par MEDLINE et EMBASE, et 79% de ceux repérés par MEDLINE et PsycINFO.

CONCLUSION

Bien que plusieurs chercheurs et bibliothécaires soutiennent que MEDLINE et EMBASE sont des bases de données relativement distinctes, suggérant donc qu’il faut les utiliser toutes deux pour une recherche complète, ce n’est pas ce que nous avons observé avec le sujet aboriginal. Les résultats de cette étude montrent que MEDLINE fournit la couverture la plus étendue du sujet aboriginal. D’autres sujets pourraient nécessiter l’utilisation de plusieurs bases de données.

While the virtual hallways of the electronic medical library are not as dusty as those we inhabited during medical training, they can at times appear just as confusing and dimly lit. Electronic searches can be both fun and frustrating for busy clinicians and primary care researchers. They can be fun when the information is instantly at our fingertips and frustrating because we have to navigate by foreign maps and sometimes we either cannot find what we want or find too much of what we want.

While many of us have developed search strategies that meet our current needs, comprehensive literature reviews often require more complicated strategies. Literature searching is like many medical skills: the more practised we are, the more we can appreciate subtleties in presentation. In the process of researching the topic aboriginal, we learned some lessons we would like to pass along to readers.

Aboriginal and First Nations

Researchers searching the topic aboriginal are faced with current evolving political and cultural terminology. The terminology we use today is not the same as that used by librarians in the 1960s and around which the databases were organized.

According to the Canadian Constitution, the term aboriginal refers to the indigenous inhabitants of Canada. This comprises 3 distinct groups: First Nations, Inuit, and Metis.1 First Nations is, therefore, a subset of aboriginal and has replaced the term North American Indians in contemporary discussion. MeSH terms, on the other hand, do not comply with current accepted terminology and instead often use uncommon descriptions, such as American native continental ancestry group or American Indian, for First Nations designations.2 In addition, some databases do not allow for a distinction between North American natives and native groups in Central and South America, as we found all groups were sometimes categorized under the term American Indian.

Ovid and PubMed

Ovid and PubMed are common ways to search the literature and they differ in interesting ways. Ovid, which is a search engine, can access many common databases including MEDLINE and EMBASE. Although Ovid-accessible databases share the same search interface, they have their own unique MeSH terms. MeSH terms are descriptors developed by librarians to organize and categorize topics.3,4 Fortunately, the Ovid search engine takes you to these terms by default, as they are usually not obvious. For example, aboriginal is not a MeSH term, but if you enter it into Ovid, a map of terms such as Indians, North American will be produced instead. The alternative to a MeSH term search is a text word search. A text word search finds articles that contain the given word anywhere in the title, abstract, or text of the article.5 Depending on how common the word is, an unwieldy number of articles can be produced. For example, entering Native into PubMed brings up more than 100 000 publications. One advantage to searching by text word is that such a search can find specific and infrequently used words. Entering Ojibway, which is not a MeSH term, will uncover a manageable 32 articles, even though Ojibway might not be the main focus of these articles.

PubMed is a database that uses a search engine called Entrez. MEDLINE, the most common database accessed through Ovid,6 essentially produces the same articles as PubMed with a few exceptions. PubMed is slightly larger than MEDLINE as its scope is marginally broader, and new references are added to PubMed more quickly than they are to MEDLINE.

The difference in entering a term into Ovid MEDLINE and entering a term into PubMed is that PubMed’s default setting will search by text word and MeSH term simultaneously. Therefore, if you do not specify MeSH term only, PubMed will likely retrieve a large number of articles because it has combined a reasonable number of MeSH references with a large number of text word references. An Ovid search will retrieve articles by MeSH term only. A PubMed search that is limited to MeSH terms will be similar in scope to an Ovid MEDLINE search.

METHODS

We searched 7 common medical databases using all the MeSH terms for aboriginal (both for Canada’s First Nations people and foreign aboriginal peoples): Ovid MEDLINE, EMBASE, PubMed, CINAHL, Healthstar, PsycINFO, and EBM Reviews. We searched the topics of interest using subject (MeSH term) and text word strategies in Ovid and PubMed databases.

We conducted a secondary analysis to identify the distinct references to aboriginal in EMBASE, Healthstar, and PsycINFO and compared them with those in MEDLINE. Using the Ovid interface, we searched using 2 databases simultaneously. All relevant MeSH terms for the 2 databases were used and combined with the Boolean operator OR. The “remove duplicates” function in Ovid was used to discover the number of articles distinct to each database.

Ovid databases searched

  • MEDLINE contains more than 15 million articles published in more than 4600 biomedical journals from 1950 to the present.7
  • CINAHL (Cumulative Index to Nursing and Allied Health Literature) is the database of nursing and allied health literature and contains articles from 1982 to the present.
  • Healthstar comprises data from MEDLINE, the hospital literature index, and selected journals; focuses on clinical and nonclinical aspects of health care delivery; and includes journal articles, technical reports, government documents, and newspaper articles from 1975 to the present.
  • PsycINFO contains literature on psychology from more than 2200 periodicals from 1872 to the present. It was previously known as PsycLIT.8
  • EMBASE is a biomedical and pharmaceutical database with more than 18 million records from 1974 to the present.9 It includes more European articles than MEDLINE does.10
  • EBM Reviews contains evidence-based medicine records from 1948 to the present from the American College of Physicians Journal Club, the Cochrane Controlled Trials Register, the Cochrane Database of Systematic Reviews, and the Database of Abstracts of Reviews of Effects.

Other databases searched

  • PubMed contains more than 17 million articles11 from MEDLINE and other life sciences journals that might be beyond the scope of MEDLINE (eg, Astrophysics) from 1950 to the present.12
  • The Native Health Database includes literature, documents, reports, and surveys relating to the health of American Indians, Alaska Natives, and Canadian First Nations peoples from 1966 to the present.

RESULTS

Search terms

Databases treat their articles in unique ways. Australian aboriginal literature, for example, is identified as such in Healthstar, MEDLINE, and PubMed using Oceanic ancestry group as a MeSH term. In EMBASE, Australian aboriginal literature might be indexed under indigenous people or Aborigines.

Articles on North American First Nations people, previously referred to as North American Indians, can be searched in MEDLINE under Indians, North American, and in EMBASE under American Indians, but the latter includes literature on South and Central American Natives as well. Owing to the way EMBASE organizes its MeSH terms, we were unable to specifically identify unique EMBASE contributions on this topic, but we did ascertain that the number of articles in EMBASE was much smaller than the number in MEDLINE.

Text word searches for broad terms produce unmanageably large numbers of articles but might be helpful for searching for articles on specific tribes (Table 1).

Table 1
Number of articles found through searches using text words for the topic aboriginal

Comparison of databases

The total number of distinct articles shown in Table 2 for each database provides an initial overview of the comprehensiveness of each database. Combining all articles on the topic aboriginal was possible methodologically and provided a useful way to compare databases. These numbers will be of less interest to researchers who are focusing on a specific aboriginal group. Our results illustrate that MEDLINE provides the most extensive coverage of the topic aboriginal when a search is done using MeSH terms.

Table 2
Number of articles found through searches using various MeSH terms for the topic aboriginal

For those who wish to search more than 1 database, our secondary analysis will help them decide which combination of databases will provide the most comprehensive search results. Once we eliminated the overlap between databases, we were able to see their distinctiveness. Of the 3 databases used in combination with MEDLINE for searching the topic aboriginal, PsycINFO is the most distinct from MEDLINE and Healthstar the least (Figures 133).

Figure 1
Results of a MeSH term search for the topic North American aboriginal: Ovid MEDLINE vs Healthstar.
Figure 2
Results of a MeSH term search for North American and international articles on the topic aboriginal: Ovid MEDLINE vs EMBASE.
Figure 3
Results of a MeSH term search for North American and international articles on the topic aboriginal: Ovid MEDLINE vs PsycINFO.

DISCUSSION

The distinctiveness of each MeSH term and the variations in the way terms are organized in the various databases highlight the importance of selecting each of the terms to be used in the search. Rosser and colleagues examined the difference between terms used by British physicians and those used by Canadian physicians. They pointed out that the use of general practice, family medicine, or family practice as key words yielded substantially different results depending on the interface used.13 We believe that mapping search terms to the database to be used and creating a search strategy specific to that database and its organization of MeSH terms will lead to more comprehensive results.

The decision about which databases to search to get thorough reviews of the literature will likely vary by topic.1416 Several researchers and librarians recommend combining MEDLINE and EMBASE for a complete review,17,18 as these 2 databases often have been found to contain quite distinct listings for primary care topics. Wilkins searched 15 family medicine topics in these 2 databases and found EMBASE yielded significantly more articles than MEDLINE did (P = .0005).16 The fact that EMBASE references more European literature than the other databases do, might explain why it seemed to be a less useful resource for our example search of literature on North American First Nations. For the topic aboriginal, we found MEDLINE to be sufficiently complete.

Limitations

Since EMBASE did not have a specific category for North American First Nations, we could not identify its unique contributions to that topic. We used the “remove duplicates” feature on Ovid, but this feature was limited to 6000 entries. We therefore broke the data sets down chronologically to below 6000 entries to allow the feature to remove duplicate entries. We found small inaccuracies in the “remove duplicates” function in Ovid, but we are confident that our results adequately describe the differences in coverage of the various databases.

Conclusion

An awareness of available databases and of the scope and organization of MeSH terms in these databases can assist researchers in choosing the best ways to define search parameters that will adequately cover the desired topic. For the topic aboriginal, a search of MEDLINE appeared to produce a sufficiently complete listing of articles. Searching PsycINFO also might have produced additional relevant articles. Other topics might require researchers to select different databases and use different search strategies.

Acknowledgment

We thank Alexander Lyubechansky, librarian for the Northern Ontario Virtual Library, for reading parts of this study and offering suggestions.

Notes

EDITOR’S KEY POINTS

  • Are all medical databases the same? The authors looked at how 7 major databases differed in the number of articles covered. Using MeSH term and text word search strategies for the topic aboriginal, they found that MEDLINE had the most extensive coverage. Of the 3 databases used in combination with MEDLINE, PsycINFO was the most distinct from MEDLINE, and Healthstar was the least distinct.
  • The authors also found that searching using MeSH terms and text words simultaneously, as with a PubMed default search, produced an unmanageable number of articles. Searching general terms was best done by subject using a MeSH term; a unique term was best found using a text word search.
  • The authors concluded that databases treat their articles in unique ways. Awareness of available databases and of the scope and organization of MeSH terms in these databases will help researchers choose the best ways to define search parameters that will adequately cover the desired topic. Creating search strategies specific to each database and its organization of MeSH terms will lead to more comprehensive results.

POINTS DE REPÈRE DU RÉDACTEUR

  • Les bases de données sont-elles toutes semblables? Les auteurs ont vérifié les différences entre les nombres d’articles repérés par 7 bases de données majeures. Utilisant des stratégies de recherche à la fois par termes MeSH et par mots courants pour le sujet aboriginal, ils ont observé que MEDLINE fournissait la plus large couverture. Des 3 bases de données utilisées en combinaison avec MEDLINE, PsycINFO était la plus différente et Healthstar la moins différente.
  • Les auteurs ont aussi observé qu’en utilisant simultanément des termes MeSH et des mots courants, comme dans une recherche PubMed par défaut, on obtenait un nombre ingérable d’articles. Une recherche sur des termes généraux était préférablement effectuée par sujet, à l’aide de termes MeSH; pour un terme unique, un mot courant était préférable.
  • Les auteurs concluent que chaque base de données traite ses articles d’une façon qui lui est propre. Une bonne connaissance des bases de données disponibles, et de l’étendue et de l’organisation de leurs termes MeSH, aidera le chercheur à choisir la meilleure façon de définir les paramètres de recherche devant couvrir adéquatement le sujet désiré. La création de stratégies de recherche spécifiques à chaque base de données et à l’organisation de ses termes MeSH procurera des résultats plus complets.

Footnotes

Full text is available in English at www.cfp.ca.

Contributors

Dr Kelly and Ms St Pierre-Hansen contributed to concept and design of the study; data gathering, analysis, and interpretation; and preparing the article for submission.

Competing interests

None declared

This article has been peer reviewed.

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