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Exploration of a fundamental substituent effect of α-ketoheterocycle enzyme inhibitors: potent and selective inhibitors of fatty acid amide hydrolase Department of Chemistry and the Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, California 92037, USA *Corresponding author: email boger/at/scripps.edu The publisher's final edited version of this article is available at Bioorg Med Chem Lett.Abstract A series of C4 substituted α-ketooxazoles were examined as inhibitors of the serine hydrolase fatty acid amide hydrolase in efforts that further define and generalize a fundamental substituent effect on enzyme inhibitory potency. Thus, a plot of the Hammett σm versus –log Ki provided a linear correlation (R2 = 0.90) with a slope of 3.37 (ρ = 3.37) that is of a magnitude that indicates the electron-withdrawing character of the substituent dominates its effects (a one unit change in σm provides a >1000-fold change in Ki). Fatty acid amide hydrolase (FAAH)1,2 is the enzyme that serves to hydrolyze endogenous lipid amides3,4 including anandamide (1a)5 and oleamide (1b),6 Figure 1
Due to the therapeutic potential of inhibiting FAAH9 especially for the treatment of pain,10 inflammation,11 or sleep disorders,12 there has been increasing interest in the development of selective and potent inhibitors of the enzyme.9 Early studies shortly following the initial discovery and characterization of FAAH led to the demonstration that the endogenous sleep-inducing molecule 2-octyl α-bromoacetoacetate is an effective FAAH inhibitor,13 the disclosure of a series of nonselective, reversible inhibitors bearing an electrophilic ketone (e.g., trifluoromethyl ketone-based inhibitors),14,15 and the reports of a set of irreversible inhibitors16 (e.g., fluorophosphonates and sulfonyl fluorides). To date, two classes of inhibitors have been disclosed that provide opportunities for the development of inhibitors with therapeutic potential. One class is the reactive aryl carbamates and ureas17–24 that irreversibly acylate a FAAH active site serine.25 A second class is the α-ketoheterocycle-based inhibitors26–29 that bind to FAAH via reversible hemiketal formation with an active site serine. Many of these latter competitive inhibitors are not only potent and extraordinarily selective for FAAH versus other mammalian serine hydrolases, but members of this class have been shown to be efficacious analgesics in vivo.28 In the course of these latter studies, we disclosed a fundamental substituent effect in which a well-defined correlation between the electronic character of a para substituent (Hammett σp) and the inhibitor potency (−log Ki) was observed.27 Thus, the inhibitor potency was found to smoothly increase as the electron-withdrawing character of the substituent increased and the magnitude of the effect was remarkably large (ρ = 2.7–3.0)26,27 indicating that a unit change in σp leads to nearly a 1000-fold increase in Ki. Presumably this reflects the electronic effect of the substituent on activating the electrophilic carbonyl toward nucleophilic attack by the FAAH active site catalytic Ser. Herein, we further generalize this fundamental effect to include meta substituents on the α-ketoheterocycle. Whereas the former para substituents are directly conjugated with the electrophilic carbonyl, the meta substituents would exert their effects through their inductive electron-withdrawing properties. Moreover and although intuitive expectations might suggest that such a non-conjugated substituent effect might be small, a comparison of Hammett σp and σm constants suggests the magnitude of the effects may be surprisingly similar and, in some instances, even enhanced (e.g., F, Cl, Br, and I). The candidate inhibitors bearing a varied C4 oxazole substituent were accessed from the readily available 2,26 enlisting its in situ conversion to the isomeric 4-bromooxazole via a halogen dance rearrangement, Scheme 1 The FAAH inhibition derived from the examination of the series of inhibitors and the correlation derived from a plot of −log Ki versus σm (ρ = 3.37, R2 = 0.90 excluding 4e, 4m, 4p, 4u) is provided in Figure 2
Importantly, this allows one to quantitatively predict a Ki from the correlation based on the Hammett substituent constant (σp and σm) or use the measured Ki to draw inferences about active site binding that might not be known a priori. As an example of the latter, we can confidently establish that 4o binds the FAAH active site as its deprotonated carboxylate (σm = 0.02) versus carboxylic acid (σm = 0.35) from the measured Ki and this conclusion is reasonable given the pH of the enzyme assay conditions (pH = 9.0).26 More subtly, we were able to establish that aldehyde 4g (and trifluoromethyl ketone 4i) exist in protic solution as gem diols (at C4, not C2; 1H and 13C NMR, data in Supporting Information) and that they inhibit FAAH with potencies at a level more consistent with this C4 substituent gem diol versus carbonyl active site binding. Although the latter C(OH)2CF3 gem diol most likely suffers significant destabilizing steric interactions at the enzyme active site comparable to that of a t-butyl substituent, the measured Ki of the hydrated aldehyde (CH(OH)2) is of a magnitude that suggests it may provide a good estimate of the σm for this substituent (0.02 for CH(OH)2 vs 0.35 for CHO). That is, the correlation between σm and Ki is sufficiently dependable that deviations from the expectations can be utilized to establish features of active site binding not a priori known. In this correlation, there are several inhibitors (4m, 4k, 4p, and 4q) that deviate productively from expectations being more potent than predicted. All four could benefit from additional H-bonding at the active site that may increase affinity beyond that expected. Based on their relative Ki’s, the 4-pyridyl derivative 4m and, to a lesser extent, the 2-pyridyl derivative 4k may interact with H-bond donors including the mobile catalytic Lys142 at the FAAH active site26 where such a potential H-bond may be regarded not only as a conventional H-bond stabilizing interaction, but also as a partial protonation of the pyridyl nitrogen enhancing its electron-withdrawing properties. Similarly, the primary carboxamide 4p and, to a lesser extent, the secondary carboxamide 4q productively deviate from correlation expectations, whereas the tertiary carboxamide 4r falls below extrapolated35 expectations. Attractive explanations for this behavior include questions on the accuracy of the carboxamide σm, a productive H-bonding interaction of RCONHR at the FAAH active site for 4p and 4q (but not 4r) that further increase affinity, and/or destabilizing steric interactions that emerge only with the tertiary amide 4r. Two substituents (–Me, –OMe) display substantial nonproductive deviations from the correlation. Although we do not yet have attractive explanations for their behavior, both represent electron-donating and electron-rich substituents whose activity is predicted to be among the poorest. Thus, while additional substituent features can and will modulate the binding affinity of the candidate inhibitors (e.g., H-bonding, hydrophobic or steric interactions), the magnitude of the electronic effect of the substituent (ρ = 3.37) indicates that the latter will typically dominate, especially for small and simple substituents. Finally, the oxazole substituents in such inhibitors not only influence the FAAH inhibitor potency, but they can have an equally remarkable impact on the FAAH inhibition selectivity.26 Although there are no other characterized mammalian members of the serine hydrolase family that bear the amidase signature sequence and its unusual Ser–Ser–Lys catalytic triad and no resulting close family of enzymes against which to counter screen the candidate inhibitors, a close collaboration with Professor Cravatt led to the implementation of a proteome-wide assay capable of simultaneously interrogating all mammalian serine hydrolases applicable to assessing the selectivity of reversible enzyme inhibitors.35 This assay, which requires no modification of the inhibitor, no purified protein for conventional substrate assay, no knowledge of candidate off-site targets or even the function or substrate of the enzymes, can globally detect, identify, and quantitate all potential competitive enzyme targets in the human proteome for such inhibitors.36 To date, two enzymes have emerged at potential competitive targets for inhibitors in this class: triacylglycerol hydrolase (TGH) and a previously uncharacterized membrane-associated hydrolase that lacked known substrates or function at the time (KIAA1363), but has since been characterized by Cravatt and coworkers.37 Enlisting this proteome selectivity assay, we have been able to simultaneously optimize inhibitors for both FAAH potency and selectivity, identifying key features of candidate inhibitors that can increase binding at the FAAH active site while simultaneously disrupting KIAA1363 and TGH affinity. This multidimensional SAR optimization is highlighted beautifully with the inhibitors 4t, 4s, 4k, 4m and 4o with the results summarized in Figure 3
One additional feature of this study merits highlighting. In earlier studies,26 we found that either a 4-substituent or 5-substituent on the oxazole can be utilized to enhance FAAH inhibitor potency, but candidate inhibitors bearing both were significantly less active. Although not extensively investigated, analogous observations were made in the course of these studies.38 This suggests that the two classes of oxazole-based inhibitors may bind at the FAAH active site in a manner that places the substituent in a comparable location. This simply requires a flipped orientation of the oxazole at the active site reversing the location of the N and O of the heterocycle (Figure 4 A series of C4 substituted α-ketooxazoles were examined as inhibitors of the serine hydrolase fatty acid amide hydrolase in efforts that further define and generalize a fundamental substituent effect on enzyme inhibitory potency. A plot of the Hammett σm versus −log Ki provided a linear correlation (R2 = 0.90) with a slope of 3.37 (ρ = 3.37) that is of a magnitude that indicates the electron-withdrawing character of the substituent dominates its effects (a one unit change in σm provides a >1000-fold change in Ki). Moreover, this meta substituent effect is comparable, essentially identical, to that we previously defined for para substituents (ρ = 2.7–3.0, R2 = 0.91–0.97)26,29 confirming both its generality and magnitude independent of the site of substitution. Importantly, the correlation provides a useful and predictive design principle for enzyme inhibitors and is of a sufficient accuracy that subtleties of active site binding that are not known a priori may be established from a measured Ki. These observations may prove useful not only to extend to other enzyme classes, but have provided herein an additional and useful class of potent and selective FAAH inhibitors. 2 Supporting Information Available. Full experimental details on the preparation and characterization of the inhibitors, the FAAH inhibition assay, and FAAH assay measurement errors are provided. Click here to view.(1.1M, doc) Acknowledgments We gratefully acknowledge the financial support of the National Institutes of Health (DA15648), and the Skaggs Institute for Chemical Biology. We are especially grateful to Professor B. F. Cravatt for the supply of rat and recombinant human FAAH and for stimulating collaborations. References and Notes 1. Cravatt BF, Giang DK, Mayfield SP, Boger DL, Lerner RA, Gilula NB. Nature. 1996;384:83. [PubMed] 2. Giang DK, Cravatt BF. Proc Natl Acad Sci USA. 1997;94:2238. [PubMed] 3. Patricelli MP, Cravatt BF. Vit Hormones. 2001;62:95. 4. Boger DL, Fecik RA, Patterson JE, Miyauchi H, Patricelli MP, Cravatt BF. Bioorg Med Chem Lett. 2000;10:2613. [PubMed] 5. Devane WA, Hanus L, Breuer A, Pertwee RG, Stevenson LA, Griffin G, Gibson D, Mandlebaum A, Etinger A, Mechoulam R. 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[PubMed]Leung D, Du W, Hardouin C, Cheng H, Hwang I, Cravatt BF, Boger DL Bioorg Med Chem Lett. 2005;15:1423. [PubMed]Romero FA, Du W, Hwang I, Rayl TJ, Kimball FS, Leung D, Hoover HS, Apodaca RL, Breitenbucher BJ, Cravatt BF, Boger DL J Med Chem. 2007;50:1058. [PubMed]Hardouin C, Kelso MJ, Romero FA, Rayl TJ, Leung D, Hwang I, Cravatt BF, Boger DL J Med Chem. 2007;50:3359. [PubMed]Kimball FS, Romero FA, Ezzili C, Garfunkle J, Rayl TJ, Hochstatter DG, Hwang I, Boger DL J Med Chem. 2008;51:937. [PubMed]Garfunkle J, Ezzili C, Rayl TJ, Hochstatter DG, Hwang I, Boger DL J Med Chem. 2008;51 in press. For a review of α-ketoheterocycle enzyme inhibitors, see Maryanoff BE, Costanzo MJ Bioorg Med Chem. 2008;16:1562. [PubMed] 27. Romero FA, Hwang I, Boger DL J Am Chem Soc. 2006;68:14004. [PubMed] Although we are unaware of reports that enlist Hammett σp or σm values on oxazoles, studies on heterocycles including furan and thiophene exhibit near perfect Hammett σp or σm correlations with those established for phenyl as we have used them, see: Freeman F J Chem Edu. 1970;47:140. 28. Lichtman AH, Leung D, Shelton CC, Saghatelian A, Hardouin C, Boger DL, Cravatt BF. J Pharmacol Exp Ther. 2004;311:441. [PubMed]Chang L, Luo L, Palmer JA, Sutton S, Wilson SJ, Barbier AJ, Breitenbucher JG, Chaplan SR, Webb M. Br J Pharmacol. 2006;148:102. [PubMed] 29. For additional studies, see: Du W, Hardouin C, Cheng H, Hwang I, Boger DL Bioorg Med Chem Lett. 2005;15:103. [PubMed]Muccioli GG, Fazio N, Scriba GKE, Poppitz W, Cannata F, Poupaert JH, Wouters J, Lambert DM J Med Chem. 2006;49:417. [PubMed]Saario SM, Poso A, Juvonen RO, Jarvinen T, Salo–Ahen OMH J Med Chem. 2006;49:4650. 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For example, the 4,5-dibromo derivative, 1-(4,5-dibromooxazol-2-yl)-7-phenylheptan-1-one, exhibited a Ki of 47 nM. This is 16-fold less potent than the 5-bromo derivative (Ki = 3 nM), 16-fold less potent than 4b, and >100-fold less active than estimates based on the combined substituent effects. |
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Nature. 1996 Nov 7; 384(6604):83-7.
[Nature. 1996]Proc Natl Acad Sci U S A. 1997 Mar 18; 94(6):2238-42.
[Proc Natl Acad Sci U S A. 1997]Bioorg Med Chem Lett. 2000 Dec 4; 10(23):2613-6.
[Bioorg Med Chem Lett. 2000]Science. 1992 Dec 18; 258(5090):1946-9.
[Science. 1992]Science. 1995 Jun 9; 268(5216):1506-9.
[Science. 1995]Curr Opin Chem Biol. 2003 Aug; 7(4):469-75.
[Curr Opin Chem Biol. 2003]Proc Natl Acad Sci U S A. 2001 Jul 31; 98(16):9371-6.
[Proc Natl Acad Sci U S A. 2001]Science. 2007 Jun 8; 316(5830):1494-7.
[Science. 2007]Sleep. 2004 Aug 1; 27(5):857-65.
[Sleep. 2004]Bioorg Med Chem Lett. 1998 Mar 17; 8(6):613-8.
[Bioorg Med Chem Lett. 1998]Chem Soc Rev. 2007 Jul; 36(7):1046-57.
[Chem Soc Rev. 2007]Biochemistry. 2001 Apr 3; 40(13):4005-15.
[Biochemistry. 2001]Chem Biol. 2006 Oct; 13(10):1041-50.
[Chem Biol. 2006]