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Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures
Pratyaksha Wirapati, Christos Sotiriou, Susanne Kunkel, Pierre Farmer, Sylvain Pradervand, Benjamin Haibe-Kains, Christine Desmedt, Michail Ignatiadis, Thierry Sengstag, Frédéric Schütz, Darlene R Goldstein, Martine Piccart, Mauro Delorenzi
Breast Cancer Res. 2008; 10(4): R65. Published online 2008 July 28. doi: 10.1186/bcr2124
PMCID:
PMC2575538
Abstract Full Text PDF–755K Supplementary Material

Is Cited by the Following 87 Articles in this Archive:

Comparison of data-merging methods with SVM attribute selection and classification in breast cancer gene expression
Vitoantonio Bevilacqua, Paolo Pannarale, Mirko Abbrescia, Claudia Cava, Angelo Paradiso, Stefania Tommasi
BMC Bioinformatics. 2012; 13(Suppl 7): S9. Published online 2012 May 8. doi: 10.1186/1471-2105-13-S7-S9
PMCID:
PMC3348047
Abstract Full Text PDF–2.3M
Respective Prognostic Value of Genomic Grade and Histological Proliferation Markers in Early Stage (pN0) Breast Carcinoma
Fabien Reyal, Marc A. Bollet, Martial Caly, David Gentien, Sabrina Carpentier, Hélène Peyro-Saint-Paul, Jean-Yves Pierga, Paul Cottu, Véronique Dieras, Brigitte Sigal-Zafrani, Anne Vincent-Salomon, Xavier Sastre-Garau
PLoS One. 2012; 7(4): e35184. Published online 2012 April 18. doi: 10.1371/journal.pone.0035184
PMCID:
PMC3329444
Abstract Full Text PDF–402K Supplementary Material
A Prognostic Gene Expression Profile That Predicts Circulating Tumor Cell Presence in Breast Cancer Patients
Timothy J. Molloy, Paul Roepman, Bjørn Naume, Laura J. van't Veer
PLoS One. 2012; 7(2): e32426. Published online 2012 February 23. doi: 10.1371/journal.pone.0032426
PMCID:
PMC3285692
Abstract Full Text PDF–382K Supplementary Material
Mixed Effects Modeling of Proliferation Rates in Cell-Based Models: Consequence for Pharmacogenomics and Cancer
Hae Kyung Im, Eric R. Gamazon, Amy L. Stark, R. Stephanie Huang, Nancy J. Cox, M. Eileen Dolan
PLoS Genet. 2012 February; 8(2): e1002525. Published online 2012 February 9. doi: 10.1371/journal.pgen.1002525
PMCID:
PMC3276560
Abstract Full Text PDF–627K Supplementary Material
A Phenotypic Mouse Model of Basaloid Breast Tumors
Soyoung Kim, Avtar Roopra, Caroline M. Alexander
PLoS One. 2012; 7(2): e30979. Published online 2012 February 9. doi: 10.1371/journal.pone.0030979
PMCID:
PMC3276569
Abstract Full Text PDF–3.2M Supplementary Material
Comparisons between different polychemotherapy regimens for early breast cancer: meta-analyses of long-term outcome among 100 000 women in 123 randomised trials
Early Breast Cancer Trialists' Collaborative Group (EBCTCG)
Lancet. 2012 February 4; 379(9814): 130–135. doi: 10.1016/S0140-6736(11)61625-5
PMCID:
PMC3273723
Abstract Full Text Supplementary Material
A mammary stem cell population identified and characterized in late embryogenesis reveals similarities to human breast cancer
Benjamin T. Spike, Dannielle D. Engle, Jennifer C. Lin, Samantha K. Cheung, Justin La, Geoffrey M. Wahl
Cell Stem Cell. Author manuscript; available in PMC 2013 February 3.
Published in final edited form as: Cell Stem Cell. 2012 February 3; 10(2): 183–197. doi: 10.1016/j.stem.2011.12.018
PMCID:
PMC3277444
Free in PMC on 2013/02/03
Comprehensive literature review and statistical considerations for microarray meta-analysis
George C. Tseng, Debashis Ghosh, Eleanor Feingold
Nucleic Acids Res. 2012 May; 40(9): 3785–3799. Published online 2012 January 19. doi: 10.1093/nar/gkr1265
PMCID:
PMC3351145
Abstract Full Text PDF–3.7M Supplementary Material
A Three-Gene Model to Robustly Identify Breast Cancer Molecular Subtypes
Benjamin Haibe-Kains, Christine Desmedt, Sherene Loi, Aedin C. Culhane, Gianluca Bontempi, John Quackenbush, Christos Sotiriou
J Natl Cancer Inst. 2012 February 22; 104(4): 311–325. Published online 2012 January 18. doi: 10.1093/jnci/djr545
PMCID:
PMC3283537
Free in PMC on 2013/02/22
A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer
Robin M. Hallett, Anna Dvorkin-Gheva, Anita Bane, John A. Hassell
Sci Rep. 2012; 2: 227. Published online 2012 January 17. doi: 10.1038/srep00227
PMCID:
PMC3259129
Abstract Full Text PDF–752K Supplementary Material
Robust rank aggregation for gene list integration and meta-analysis
Raivo Kolde, Sven Laur, Priit Adler, Jaak Vilo
Bioinformatics. 2012 February 15; 28(4): 573–580. Published online 2012 January 12. doi: 10.1093/bioinformatics/btr709
PMCID:
PMC3278763
Abstract Full Text PDF–718K Supplementary Material
The Influence of Feature Selection Methods on Accuracy, Stability and Interpretability of Molecular Signatures
Anne-Claire Haury, Pierre Gestraud, Jean-Philippe Vert
PLoS One. 2011; 6(12): e28210. Published online 2011 December 21. doi: 10.1371/journal.pone.0028210
PMCID:
PMC3244389
Abstract Full Text PDF–1023K
Empirical comparison of cross-platform normalization methods for gene expression data
Jason Rudy, Faramarz Valafar
BMC Bioinformatics. 2011; 12: 467. Published online 2011 December 7. doi: 10.1186/1471-2105-12-467
PMCID:
PMC3314675
Abstract Full Text PDF–2.5M Supplementary Material
Luminal-B breast cancer and novel therapeutic targets
Ben Tran, Philippe L Bedard
Breast Cancer Res. 2011; 13(6): 221. Published online 2011 November 30. doi: 10.1186/bcr2904
PMCID:
PMC3326541
Free in PMC on 2012/05/30
Multiple-input multiple-output causal strategies for gene selection
Gianluca Bontempi, Benjamin Haibe-Kains, Christine Desmedt, Christos Sotiriou, John Quackenbush
BMC Bioinformatics. 2011; 12: 458. Published online 2011 November 25. doi: 10.1186/1471-2105-12-458
PMCID:
PMC3323860
Abstract Full Text PDF–814K Supplementary Material
MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis
Dongwan D. Kang, Etienne Sibille, Naftali Kaminski, George C. Tseng
Nucleic Acids Res. 2012 January; 40(2): e15. Published online 2011 November 23. doi: 10.1093/nar/gkr1071
PMCID:
PMC3258120
Abstract Full Text PDF–3.7M Supplementary Material
Meta-analysis of phase III trials of docetaxel alone or in combination with chemotherapy in metastatic breast cancer
Maurizio Belfiglio, Caterina Fanizza, Nicola Tinari, Corrado Ficorella, Stefano Iacobelli, Clara Natoli, Consorzio Interuniversitario Nazionale per la Bio-Oncologia (CINBO)
J Cancer Res Clin Oncol. 2012 February; 138(2): 221–229. Published online 2011 November 18. doi: 10.1007/s00432-011-1091-0
PMCID:
PMC3258394
Abstract Full Text PDF–627K
Ki-67: level of evidence and methodological considerations for its role in the clinical management of breast cancer: analytical and critical review
Elisabeth Luporsi, Fabrice André, Frédérique Spyratos, Pierre-Marie Martin, Jocelyne Jacquemier, Frédérique Penault-Llorca, Nicole Tubiana-Mathieu, Brigitte Sigal-Zafrani, Laurent Arnould, Anne Gompel, Caroline Egele, Bruno Poulet, Krishna B. Clough, Hubert Crouet, Alain Fourquet, Jean-Pierre Lefranc, Carole Mathelin, Nicolas Rouyer, Daniel Serin, Marc Spielmann, Margaret Haugh, Marie-Pierre Chenard, Etienne Brain, Patricia de Cremoux, Jean-Pierre Bellocq
Breast Cancer Res Treat. 2012 April; 132(3): 895–915. Published online 2011 November 3. doi: 10.1007/s10549-011-1837-z
PMCID:
PMC3332349
Abstract Full Text PDF–387K
Drug Repositioning using Disease Associated Biological Processes and Network Analysis of Drug Targets
Sachin Mathur, Deendayal Dinakarpandian
AMIA Annu Symp Proc. 2011; 2011: 305–311. Published online 2011 October 22.
PMCID:
PMC3243256
Abstract Full Text PDF–154K
Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome
David Venet, Jacques E. Dumont, Vincent Detours
PLoS Comput Biol. 2011 October; 7(10): e1002240. Published online 2011 October 20. doi: 10.1371/journal.pcbi.1002240
PMCID:
PMC3197658
Abstract Full Text PDF–443K Supplementary Material
RUNX1 and its understudied role in breast cancer
Kevin A Janes
Cell Cycle. 2011 October 15; 10(20): 3461–3465. Published online 2011 October 15. doi: 10.4161/cc.10.20.18029
PMCID:
PMC3266176
Free in PMC on 2012/10/15
Prognostic and predictive role of ESR1 status for postmenopausal patients with endocrine-responsive early breast cancer in the Danish cohort of the BIG 1-98 trial
B. Ejlertsen, J. Aldridge, K. V. Nielsen, M. M. Regan, K. L. Henriksen, A. E. Lykkesfeldt, S. Müller, R. D. Gelber, K. N. Price, B. B. Rasmussen, G. Viale, H. Mouridsen
Ann Oncol. 2012 May; 23(5): 1138–1144. Published online 2011 October 10. doi: 10.1093/annonc/mdr438
PMCID:
PMC3335246
Free in PMC on 2013/05/01
A clinically relevant gene signature in triple negative and basal-like breast cancer
Achim Rody, Thomas Karn, Cornelia Liedtke, Lajos Pusztai, Eugen Ruckhaeberle, Lars Hanker, Regine Gaetje, Christine Solbach, Andre Ahr, Dirk Metzler, Marcus Schmidt, Volkmar Müller, Uwe Holtrich, Manfred Kaufmann
Breast Cancer Res. 2011; 13(5): R97. Published online 2011 October 6. doi: 10.1186/bcr3035
PMCID:
PMC3262210
Abstract Full Text PDF–3.6M Supplementary Material
A clinically relevant gene signature in triple negative and basal-like breast cancer
Achim Rody, Thomas Karn, Cornelia Liedtke, Lajos Pusztai, Eugen Ruckhaeberle, Lars Hanker, Regine Gaetje, Christine Solbach, Andre Ahr, Dirk Metzler, Marcus Schmidt, Volkmar Müller, Uwe Holtrich, Manfred Kaufmann
Breast Cancer Res. 2011; 13(5): R97. Published online 2011 October 6. doi: 10.1186/bcr3035
PMCID:
PMC3262210
Abstract Full Text PDF–3.6M Supplementary Material
Insight into the heterogeneity of breast cancer through next-generation sequencing
Hege G. Russnes, Nicholas Navin, James Hicks, Anne-Lise Borresen-Dale
J Clin Invest. 2011 October 3; 121(10): 3810–3818. Published online 2011 October 3. doi: 10.1172/JCI57088
PMCID:
PMC3195464
Abstract Full Text PDF–1.6M
Breast cancer — one term, many entities?
Nicholas R. Bertos, Morag Park
J Clin Invest. 2011 October 3; 121(10): 3789–3796. Published online 2011 October 3. doi: 10.1172/JCI57100
PMCID:
PMC3195465
Abstract Full Text PDF–1.8M
Invasive Breast Cancer: Recognition of Molecular Subtypes
Johanna D. Strehl, David L. Wachter, Peter A. Fasching, Matthias W. Beckmann, Arndt Hartmann
Breast Care (Basel) 2011 August; 6(4): 258–264. Published online 2011 August 26. doi: 10.1159/000331339
PMCID:
PMC3225209
Free in PMC on 2012/08/01
Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response
Qiyuan Li, Aron C Eklund, Nicolai J Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L Richardson, Zoltan Szallasi
BMC Bioinformatics. 2011; 12: 310. Published online 2011 July 28. doi: 10.1186/1471-2105-12-310
PMCID:
PMC3155975
Abstract Full Text PDF–498K Supplementary Material
Microarray-Based Oncogenic Pathway Profiling in Advanced Serous Papillary Ovarian Carcinoma
Xuan Bich Trinh, Wiebren A. A. Tjalma, Luc Y. Dirix, Peter B. Vermeulen, Dieter J. Peeters, Dimcho Bachvarov, Marie Plante, Els M. Berns, Jozien Helleman, Steven J. Van Laere, Peter A. van Dam
PLoS One. 2011; 6(7): e22469. Published online 2011 July 25. doi: 10.1371/journal.pone.0022469
PMCID:
PMC3143137
Abstract Full Text PDF–551K
A simple method for assigning genomic grade to individual breast tumours
Kristian Wennmalm, Jonas Bergh
BMC Cancer. 2011; 11: 306. Published online 2011 July 21. doi: 10.1186/1471-2407-11-306
PMCID:
PMC3150343
Abstract Full Text PDF–182K Supplementary Material
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