pmc logo image
Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
Michael F Covington, Julin N Maloof, Marty Straume, Steve A Kay, Stacey L Harmer
Genome Biol. 2008; 9(8): R130. Published online 2008 August 18. doi: 10.1186/gb-2008-9-8-r130
PMCID:
PMC2575520
Abstract Full Text PDF–1.0M Supplementary Material
Page of 2 Next Last
 Is Cited by the Following 36 Articles in this Archive:
NFX1-LIKE2 (NFXL2) Suppresses Abscisic Acid Accumulation and Stomatal Closure in Arabidopsis thaliana
Janina Lisso, Florian Schröder, Joachim Fisahn, Carsten Müssig
PLoS One. 2011; 6(11): e26982. Published online 2011 November 3. doi: 10.1371/journal.pone.0026982
PMCID:
PMC3207813
Abstract Full Text PDF–915K Supplementary Material
Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis
Ann Atwood, Robert DeConde, Susanna S. Wang, Todd C. Mockler, Jamal S. M. Sabir, Trey Ideker, Steve A. Kay
Proc Natl Acad Sci U S A. 2011 November 8; 108(45): 18560–18565. Published online 2011 October 31. doi: 10.1073/pnas.1115753108
PMCID:
PMC3215069
Abstract Full Text PDF–557K Supplementary Material
Tissue Specific Diurnal Rhythms of Metabolites and Their Regulation during Herbivore Attack in a Native Tobacco, Nicotiana attenuata
Sang-Gyu Kim, Felipe Yon, Emmanuel Gaquerel, Jyotasana Gulati, Ian T. Baldwin
PLoS One. 2011; 6(10): e26214. Published online 2011 October 18. doi: 10.1371/journal.pone.0026214
PMCID:
PMC3196511
Abstract Full Text PDF–2.4M Supplementary Material
Comparative Transcriptomes Profiling of Photoperiod-sensitive Male Sterile Rice Nongken 58S During the Male Sterility Transition between Short-day and Long-day
Wei Wang, Zhenwei Liu, Zhibin Guo, Gaoyuan Song, Qin Cheng, Daiming Jiang, Yingguo Zhu, Daichang Yang
BMC Genomics. 2011; 12: 462. Published online 2011 September 25. doi: 10.1186/1471-2164-12-462
PMCID:
PMC3197534
Abstract Full Text PDF–623K Supplementary Material
Unstable Transcripts in Arabidopsis Allotetraploids Are Associated with Nonadditive Gene Expression in Response to Abiotic and Biotic Stresses
Eun-Deok Kim, Z. Jeffery Chen
PLoS One. 2011; 6(8): e24251. Published online 2011 August 29. doi: 10.1371/journal.pone.0024251
PMCID:
PMC3163679
Abstract Full Text PDF–2.0M Supplementary Material
Molecular Mechanisms Underlying the Arabidopsis Circadian Clock
Norihito Nakamichi
Plant Cell Physiol. 2011 October; 52(10): 1709–1718. Published online 2011 August 25. doi: 10.1093/pcp/pcr118
PMCID:
PMC3189347
Abstract Full Text PDF–1024K
Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules
Sergei A. Filichkin, Ghislain Breton, Henry D. Priest, Palitha Dharmawardhana, Pankaj Jaiswal, Samuel E. Fox, Todd P. Michael, Joanne Chory, Steve A. Kay, Todd C. Mockler
PLoS One. 2011; 6(6): e16907. Published online 2011 June 9. doi: 10.1371/journal.pone.0016907
PMCID:
PMC3111414
Abstract Full Text PDF–2.7M Supplementary Material
Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes
Anna R. Reineke, Erich Bornberg-Bauer, Jenny Gu
Nucleic Acids Res. 2011 August; 39(14): 6029–6043. Published online 2011 April 5. doi: 10.1093/nar/gkr179
PMCID:
PMC3152334
Abstract Full Text PDF–7.4M Supplementary Material
Genomic Analysis of Circadian Clock-, Light-, and Growth-Correlated Genes Reveals PHYTOCHROME-INTERACTING FACTOR5 as a Modulator of Auxin Signaling in Arabidopsis
Kazunari Nozue, Stacey L. Harmer, Julin N. Maloof
Plant Physiol. 2011 May; 156(1): 357–372. Published online 2011 March 23. doi: 10.1104/pp.111.172684
PMCID:
PMC3091056
Abstract Full Text PDF–678K
Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis
Kevin Ashelford, Maria E Eriksson, Christopher M Allen, Rosalinda D'Amore, Mikael Johansson, Peter Gould, Suzanne Kay, Andrew J Millar, Neil Hall, Anthony Hall
Genome Biol. 2011; 12(3): R28. Published online 2011 March 23. doi: 10.1186/gb-2011-12-3-r28
PMCID:
PMC3129678
Abstract Full Text PDF–723K Supplementary Material
Network Quantitative Trait Loci Mapping of Circadian Clock Outputs Identifies Metabolic Pathway-to-Clock Linkages in Arabidopsis
Rachel E. Kerwin, Jose M. Jimenez-Gomez, Daniel Fulop, Stacey L. Harmer, Julin N. Maloof, Daniel J. Kliebenstein
Plant Cell. 2011 February; 23(2): 471–485. Published online 2011 February 22. doi: 10.1105/tpc.110.082065
PMCID:
PMC3077772
Abstract Full Text PDF–888K
Activity–dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen
Kyoko Baba, Anna Karlberg, Julien Schmidt, Jarmo Schrader, Torgeir R. Hvidsten, Laszlo Bako, Rishikesh P. Bhalerao
Proc Natl Acad Sci U S A. 2011 February 22; 108(8): 3418–3423. Published online 2011 February 2. doi: 10.1073/pnas.1011506108
PMCID:
PMC3044397
Abstract Full Text PDF–794K Supplementary Material
XAP5 CIRCADIAN TIMEKEEPER Regulates Ethylene Responses in Aerial Tissues of Arabidopsis
Cory T. Ellison, Filip Vandenbussche, Dominique Van Der Straeten, Stacey L. Harmer
Plant Physiol. 2011 February; 155(2): 988–999. Published online 2010 December 16. doi: 10.1104/pp.110.164277
PMCID:
PMC3032482
Abstract Full Text PDF–387K Supplementary Material
Network news: prime time for systems biology of the plant circadian clock truncated form of the title: Plant circadian clocks
C. Robertson McClung, Rodrigo A. Gutiérrez
Curr Opin Genet Dev. Author manuscript; available in PMC 2011 December 1.
Published in final edited form as: Curr Opin Genet Dev. 2010 December; 20(6): 588–598. doi: 10.1016/j.gde.2010.08.010
PMCID:
PMC3098449
Abstract Full Text PDF–493K
Quantitative analysis of regulatory flexibility under changing environmental conditions
Kieron D Edwards, Ozgur E Akman, Kirsten Knox, Peter J Lumsden, Adrian W Thomson, Paul E Brown, Alexandra Pokhilko, Laszlo Kozma-Bognar, Ferenc Nagy, David A Rand, Andrew J Millar
Mol Syst Biol. 2010; 6: 424. Published online 2010 November 2. doi: 10.1038/msb.2010.81
PMCID:
PMC3010117
Abstract Full Text PDF–443K Supplementary Material
Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7
Corinna Streitner, Lars Hennig, Christin Korneli, Dorothee Staiger
BMC Plant Biol. 2010; 10: 221. Published online 2010 October 14. doi: 10.1186/1471-2229-10-221
PMCID:
PMC3017831
Abstract Full Text PDF–1.9M Supplementary Material
Plant Biology in the Fourth Dimension
Stacey Harmer
Plant Physiol. 2010 October; 154(2): 467–470. Published online 2010 October 6. doi: 10.1104/pp.110.161448
PMCID:
PMC2949050
Full Text PDF–180K
Maize Global Transcriptomics Reveals Pervasive Leaf Diurnal Rhythms but Rhythms in Developing Ears Are Largely Limited to the Core Oscillator
Kevin R. Hayes, Mary Beatty, Xin Meng, Carl R. Simmons, Jeffrey E. Habben, Olga N. Danilevskaya
PLoS One. 2010; 5(9): e12887. Published online 2010 September 23. doi: 10.1371/journal.pone.0012887
PMCID:
PMC2944807
Abstract Full Text PDF–2.6M Supplementary Material
Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model
Alexandra Pokhilko, Sarah K Hodge, Kevin Stratford, Kirsten Knox, Kieron D Edwards, Adrian W Thomson, Takeshi Mizuno, Andrew J Millar
Mol Syst Biol. 2010; 6: 416. Published online 2010 September 21. doi: 10.1038/msb.2010.69
PMCID:
PMC2964123
Abstract Full Text PDF–492K Supplementary Material
Recent advances in computational modeling as a conduit to understand the plant circadian clock
Jieun Shin, Seth J Davis
F1000 Biol Rep. 2010; 2: 49. Published online 2010 July 14. doi: 10.3410/B2-49
PMCID:
PMC2950032
Abstract Full Text PDF–110K
Coordination of the maize transcriptome by a conserved circadian clock
Sadaf Khan, Scott C Rowe, Frank G Harmon
BMC Plant Biol. 2010; 10: 126. Published online 2010 June 24. doi: 10.1186/1471-2229-10-126
PMCID:
PMC3095283
Abstract Full Text PDF–1.2M Supplementary Material
A modern circadian clock in the common angiosperm ancestor of monocots and eudicots
C Robertson McClung
BMC Biol. 2010; 8: 55. Published online 2010 May 7. doi: 10.1186/1741-7007-8-55
PMCID:
PMC2867782
Abstract Full Text PDF–197K
An expanding universe of circadian networks in higher plants
Jose L Pruneda-Paz, Steve A Kay
Trends Plant Sci. Author manuscript; available in PMC 2011 May 1.
Published in final edited form as: Trends Plant Sci. 2010 May; 15(5): 259–265. Published online 2010 April 8. doi: 10.1016/j.tplants.2010.03.003
PMCID:
PMC2866796
Abstract Full Text PDF–919K
Ambient temperature response establishes ELF3 as a required component of the core Arabidopsis circadian clock
Bryan Thines, Frank G. Harmon
Proc Natl Acad Sci U S A. 2010 February 16; 107(7): 3257–3262. Published online 2010 January 28. doi: 10.1073/pnas.0911006107
PMCID:
PMC2840299
Abstract Full Text PDF–759K Supplementary Material
Molecular mechanisms of polyploidy and hybrid vigor
Z. Jeffrey Chen
Trends Plant Sci. Author manuscript; available in PMC 2011 February 1.
Published in final edited form as: Trends Plant Sci. 2010 February; 15(2): 57. Published online 2010 January 18. doi: 10.1016/j.tplants.2009.12.003
PMCID:
PMC2821985
Abstract Full Text PDF–2.6M
Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression
Christopher Vollmers, Shubhroz Gill, Luciano DiTacchio, Sandhya R. Pulivarthy, Hiep D. Le, Satchidananda Panda
Proc Natl Acad Sci U S A. 2009 December 15; 106(50): 21453–21458. Published online 2009 November 25. doi: 10.1073/pnas.0909591106
PMCID:
PMC2795502
Abstract Full Text PDF–2.2M Supplementary Material
Clocks in the Green Lineage: Comparative Functional Analysis of the Circadian Architecture of the Picoeukaryote Ostreococcus
Florence Corellou, Christian Schwartz, Jean-Paul Motta, El Batoul Djouani-Tahri, Frédéric Sanchez, François-Yves Bouget
Plant Cell. 2009 November; 21(11): 3436–3449. doi: 10.1105/tpc.109.068825
PMCID:
PMC2798331
Abstract Full Text PDF–1.7M Supplementary Material
Arabidopsis circadian clock and photoperiodism: time to think about location
Takato Imaizumi
Curr Opin Plant Biol. Author manuscript; available in PMC 2011 February 1.
Published in final edited form as: Curr Opin Plant Biol. 2010 February; 13(1): 83. Published online 2009 October 14. doi: 10.1016/j.pbi.2009.09.007
PMCID:
PMC2818179
Abstract Full Text PDF–1.4M
TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought
Tommaso Legnaioli, Juan Cuevas, Paloma Mas
EMBO J. 2009 December 2; 28(23): 3745–3757. Published online 2009 October 8. doi: 10.1038/emboj.2009.297
PMCID:
PMC2790485
Abstract Full Text PDF–812K Supplementary Material
REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways
Reetika Rawat, Jacob Schwartz, Matthew A. Jones, Ilkka Sairanen, Youfa Cheng, Carol R. Andersson, Yunde Zhao, Karin Ljung, Stacey L. Harmer
Proc Natl Acad Sci U S A. 2009 September 29; 106(39): 16883–16888. Published online 2009 September 10. doi: 10.1073/pnas.0813035106
PMCID:
PMC2757846
Abstract Full Text PDF–697K Supplementary Material
Page of 2 Next Last
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk