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Novel genes dramatically alter regulatory network topology in amphioxus
Qing Zhang, Christian M Zmasek, Larry J Dishaw, M Gail Mueller, Yuzhen Ye, Gary W Litman, Adam Godzik
Genome Biol. 2008; 9(8): R123. Published online 2008 August 4. doi: 10.1186/gb-2008-9-8-r123
PMCID:
PMC2575513
Abstract Full Text PDF–793K Supplementary Material

Is Cited by the Following 10 Articles in this Archive:

Massively Parallel RNA Sequencing Identifies a Complex Immune Gene Repertoire in the lophotrochozoan Mytilus edulis
Eva E. R. Philipp, Lars Kraemer, Frank Melzner, Albert J. Poustka, Sebastian Thieme, Ulrike Findeisen, Stefan Schreiber, Philip Rosenstiel
PLoS One. 2012; 7(3): e33091. Published online 2012 March 20. doi: 10.1371/journal.pone.0033091
PMCID:
PMC3308963
Abstract Full Text PDF–1.5M Supplementary Material
The amphioxus genome provides unique insight into the evolution of immunity
Larry J. Dishaw, Robert N. Haire, Gary W. Litman
Brief Funct Genomics. 2012 March; 11(2): 167–176. Published online 2012 March 7. doi: 10.1093/bfgp/els007
PMCID:
PMC3310213
Free in PMC on 2013/03/01
Processes of Fungal Proteome Evolution and Gain of Function: Gene Duplication and Domain Rearrangement
Inbar Cohen-Gihon, Roded Sharan, Ruth Nussinov
Phys Biol. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Phys Biol. 2011 June; 8(3): 035009. Published online 2011 May 13. doi: 10.1088/1478-3975/8/3/035009
PMCID:
PMC3140765
Free in PMC on 2012/06/01
Novel genes exhibit distinct patterns of function acquisition and network integration
John A Capra, Katherine S Pollard, Mona Singh
Genome Biol. 2010; 11(12): R127. Published online 2010 December 27. doi: 10.1186/gb-2010-11-12-r127
PMCID:
PMC3046487
Abstract Full Text PDF–663K Supplementary Material
Evolution of domain promiscuity in eukaryotic genomes—a perspective from the inferred ancestral domain architectures
Inbar Cohen-Gihon, Jessica H. Fong, Roded Sharan, Ruth Nussinov, Teresa M. Przytycka, Anna R. Panchenko
Mol Biosyst. Author manuscript; available in PMC 2012 April 7.
Published in final edited form as: Mol Biosyst. 2011 March; 7(3): 784–792. Published online 2010 December 3. doi: 10.1039/c0mb00182a
PMCID:
PMC3321261
Abstract Full Text PDF–2.7M Supplementary Material
The origins of vertebrate adaptive immunity
Gary W. Litman, Jonathan P. Rast, Sebastian D. Fugmann
Nat Rev Immunol. Author manuscript; available in PMC 2011 February 1.
Published in final edited form as: Nat Rev Immunol. 2010 August; 10(8): 543–553. doi: 10.1038/nri2807
PMCID:
PMC2919748
Abstract Full Text PDF–1.4M
Domain architecture evolution of pattern-recognition receptors
Qing Zhang, Christian M. Zmasek, Adam Godzik
Immunogenetics. 2010 May; 62(5): 263–272. Published online 2010 March 2. doi: 10.1007/s00251-010-0428-1
PMCID:
PMC2858798
Abstract Full Text PDF–1.0M Supplementary Material
The amphibians Xenopus laevis and Silurana tropicalis possess a family of activating KIR-related Immunoglobulin-like receptors
Sergey V Guselnikov, Evdokiya S Reshetnikova, Alexander M Najakshin, Ludmila V Mechetina, Jacques Robert, Alexander V Taranin
Dev Comp Immunol. Author manuscript; available in PMC 2011 March 1.
Published in final edited form as: Dev Comp Immunol. 2010 March; 34(3): 308. Published online 2009 November 17. doi: 10.1016/j.dci.2009.10.010
PMCID:
PMC2813978
Abstract Full Text PDF–1.9M Supplementary Material
phyloXML: XML for evolutionary biology and comparative genomics
Mira V Han, Christian M Zmasek
BMC Bioinformatics. 2009; 10: 356. Published online 2009 October 27. doi: 10.1186/1471-2105-10-356
PMCID:
PMC2774328
Abstract Full Text PDF–338K Supplementary Material
Dynamic Evolution of Immune System Regulators: The History of the Interferon Regulatory Factor Family
Jiří Nehyba, Radmila Hrdličková, Henry R. Bose
Mol Biol Evol. 2009 November; 26(11): 2539–2550. Published online 2009 July 28. doi: 10.1093/molbev/msp167
PMCID:
PMC2767096
Abstract Full Text PDF–983K Supplementary Material
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