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Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules
Eran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult, Joel L Sussman
Genome Biol. 2008; 9(8): R121. Published online 2008 August 3. doi: 10.1186/gb-2008-9-8-r121
PMCID:
PMC2575511
Abstract Full Text PDF–2.2M

Is Cited by the Following 17 Articles in this Archive:

Using Shifts in Amino Acid Frequency and Substitution Rate to Identify Latent Structural Characters in Base-Excision Repair Enzymes
Ramiro Barrantes-Reynolds, Susan S. Wallace, Jeffrey P. Bond
PLoS One. 2011; 6(10): e25246. Published online 2011 October 6. doi: 10.1371/journal.pone.0025246
PMCID:
PMC3188539
Abstract Full Text PDF–789K
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods
Margaret J. Gabanyi, Paul D. Adams, Konstantin Arnold, Lorenza Bordoli, Lester G. Carter, Judith Flippen-Andersen, Lida Gifford, Juergen Haas, Andrei Kouranov, William A. McLaughlin, David I. Micallef, Wladek Minor, Raship Shah, Torsten Schwede, Yi-Ping Tao, John D. Westbrook, Matthew Zimmerman, Helen M. Berman
J Struct Funct Genomics. 2011 July; 12(2): 45–54. Published online 2011 April 7. doi: 10.1007/s10969-011-9106-2
PMCID:
PMC3123456
Abstract Full Text PDF–516K
TOPSAN: a dynamic web database for structural genomics
Kyle Ellrott, Christian M. Zmasek, Dana Weekes, S. Sri Krishna, Constantina Bakolitsa, Adam Godzik, John Wooley
Nucleic Acids Res. 2011 January; 39(Database issue): D494–D496. Published online 2010 October 20. doi: 10.1093/nar/gkq902
PMCID:
PMC3013775
Abstract Full Text PDF–1.2M
Ten Simple Rules for Editing Wikipedia
Darren W. Logan, Massimo Sandal, Paul P. Gardner, Magnus Manske, Alex Bateman
PLoS Comput Biol. 2010 September; 6(9): e1000941. Published online 2010 September 30. doi: 10.1371/journal.pcbi.1000941
PMCID:
PMC2947980
Full Text PDF–76K
Unmet Challenges of Structural Genomics
Maksymilian Chruszcz, Marcin Domagalski, Tomasz Osinski, Alexander Wlodawer, Wladek Minor
Curr Opin Struct Biol. Author manuscript; available in PMC 2011 October 1.
Published in final edited form as: Curr Opin Struct Biol. 2010 October; 20(5): 587–597. Published online 2010 August 31. doi: 10.1016/j.sbi.2010.08.001
PMCID:
PMC3017768
Abstract Full Text PDF–1.4M
TOPSAN: a collaborative annotation environment for structural genomics
Dana Weekes, S Sri Krishna, Constantina Bakolitsa, Ian A Wilson, Adam Godzik, John Wooley
BMC Bioinformatics. 2010; 11: 426. Published online 2010 August 17. doi: 10.1186/1471-2105-11-426
PMCID:
PMC2936398
Abstract Full Text PDF–2.1M
PDBWiki: added value through community annotation of the Protein Data Bank
Henning Stehr, Jose M. Duarte, Michael Lappe, Jong Bhak, Dan M. Bolser
Database (Oxford) 2010; 2010: baq009. Published online 2010 April 16. doi: 10.1093/database/baq009
PMCID:
PMC2911844
Abstract Full Text PDF–408K
The Gene Wiki: community intelligence applied to human gene annotation
Jon W. Huss, III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su
Nucleic Acids Res. 2010 January; 38(Database issue): D633–D639. Published online 2010 January. doi: 10.1093/nar/gkp760
PMCID:
PMC2808918
Abstract Full Text PDF–1.8M
Benefits of Structural Genomics for Drug Discovery Research
Marek Grabowski, Maksymilian Chruszcz, Matthew D. Zimmerman, Olga Kirillova, Wladek Minor
Infect Disord Drug Targets. Author manuscript; available in PMC 2010 November 1.
Published in final edited form as: Infect Disord Drug Targets. 2009 November; 9(5): 459–474.
PMCID:
PMC2866842
Abstract Full Text PDF–1.1M
A New Method for Publishing Three-Dimensional Content
Eugene Raush, Max Totrov, Brian D. Marsden, Ruben Abagyan
PLoS One. 2009; 4(10): e7394. Published online 2009 October 20. doi: 10.1371/journal.pone.0007394
PMCID:
PMC2754609
Full Text PDF–185K
SGC - Structural Biology and Human Health: A New Approach to Publishing Structural Biology Results
Wen Hwa Lee, Julián Atienza-Herrero, Ruben Abagyan, Brian D. Marsden
PLoS One. 2009; 4(10): e7675. Published online 2009 October 20. doi: 10.1371/journal.pone.0007675
PMCID:
PMC2762615
Full Text PDF–489K
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
Lope A. Flórez, Sebastian F. Roppel, Arne G. Schmeisky, Christoph R. Lammers, Jörg Stülke
Database (Oxford) 2009; 2009: bap012. Published online 2009 September 17. doi: 10.1093/database/bap012
PMCID:
PMC2790307
Abstract Full Text PDF–776K
SAM-T08, HMM-based protein structure prediction
Kevin Karplus
Nucleic Acids Res. 2009 July 1; 37(Web Server issue): W492–W497. Published online 2009 July 1. doi: 10.1093/nar/gkp403
PMCID:
PMC2703928
Abstract Full Text PDF–904K
Seeking Health Information Online: Does Wikipedia Matter?
Michaël R. Laurent, Tim J. Vickers
J Am Med Inform Assoc. 2009 Jul-Aug; 16(4): 471–479. doi: 10.1197/jamia.M3059
PMCID:
PMC2705249
Abstract Full Text PDF–501K
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures
Ofir Goldenberg, Elana Erez, Guy Nimrod, Nir Ben-Tal
Nucleic Acids Res. 2009 January; 37(Database issue): D323–D327. Published online 2009 January. doi: 10.1093/nar/gkn822
PMCID:
PMC2686473
Abstract Full Text PDF–960K
SuperSite: dictionary of metabolite and drug binding sites in proteins
Raphael André Bauer, Stefan Günther, Dominic Jansen, Carolin Heeger, Paul Florian Thaben, Robert Preissner
Nucleic Acids Res. 2009 January; 37(Database issue): D195–D200. Published online 2009 January. doi: 10.1093/nar/gkn618
PMCID:
PMC2686477
Abstract Full Text PDF–6.7M
The RNA WikiProject: Community annotation of RNA families
Jennifer Daub, Paul P. Gardner, John Tate, Daniel Ramsköld, Magnus Manske, William G. Scott, Zasha Weinberg, Sam Griffiths-Jones, Alex Bateman
RNA. 2008 December; 14(12): 2462–2464. doi: 10.1261/rna.1200508
PMCID:
PMC2590952
Abstract Full Text PDF–58K
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