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Discovery of frameshifting in Alphavirus 6K resolves a 20-year enigma
Andrew E Firth, Betty YW Chung, Marina N Fleeton, John F Atkins
Virol J. 2008; 5: 108. Published online 2008 September 26. doi: 10.1186/1743-422X-5-108
PMCID:
PMC2569925
Abstract Full Text PDF–1.7M Supplementary Material
 Is Cited by the Following 15 Articles in this Archive:
Ribosomal frameshifting into an overlapping gene in the 2B-encoding region of the cardiovirus genome
Gary Loughran, Andrew E. Firth, John F. Atkins
Proc Natl Acad Sci U S A. 2011 November 15; 108(46): E1111-E1119. Published online 2011 October 24. doi: 10.1073/pnas.1102932108
Includes additional comments & authors
PMCID:
PMC3219106
Abstract Full Text PDF–1.8M Supplementary Material
Programmed ribosomal frameshifting in the expression of the regulator of intestinal stem cell proliferation, adenomatous polyposis coli (APC)
Pavel V Baranov, Norma M Wills, Kathy A Barriscale, Andrew E Firth, Molly C Jud, Anthea Letsou, Gerard Manning, John F Atkins
RNA Biol. 2011 Jul-Aug; 8(4): 637–647. Published online 2011 July 1. doi: 10.4161/rna.8.4.15395
PMCID:
PMC3225980
Abstract Full Text PDF–3.1M Supplementary Material
Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element
Andrew E. Firth, Norma M. Wills, Raymond F. Gesteland, John F. Atkins
Nucleic Acids Res. 2011 August; 39(15): 6679–6691. Published online 2011 April 27. doi: 10.1093/nar/gkr224
PMCID:
PMC3159437
Abstract Full Text PDF–2.3M Supplementary Material
Virus assembly, allostery, and antivirals
Adam Zlotnick, Suchetana Mukhopadhyay
Trends Microbiol. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Trends Microbiol. 2011 January; 19(1): 14–23. Published online 2010 December 14. doi: 10.1016/j.tim.2010.11.003
PMCID:
PMC3026312
Abstract Full Text PDF–2.1M
Development of infectious cDNA clones of Salmonid alphavirus subtype 3
Marius Karlsen, Stephane Villoing, Karl F Ottem, Espen Rimstad, Are Nylund
BMC Res Notes. 2010; 3: 241. Published online 2010 September 21. doi: 10.1186/1756-0500-3-241
PMCID:
PMC2949663
Abstract Full Text PDF–7.1M
The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed –1 ribosomal frameshifting
Pei-Yu Liao, Yong Seok Choi, Jonathan D. Dinman, Kelvin H. Lee
Nucleic Acids Res. 2011 January; 39(1): 300–312. Published online 2010 September 7. doi: 10.1093/nar/gkq761
PMCID:
PMC3017607
Abstract Full Text PDF–6.0M Supplementary Material
Alphavirus Entry and Membrane Fusion
Margaret Kielian, Chantal Chanel-Vos, Maofu Liao
Viruses. 2010 April; 2(4): 796–825. Published online 2010 March 26. doi: 10.3390/v2040796
PMCID:
PMC3086016
Abstract Full Text PDF–471K
Evidence for ribosomal frameshifting and a novel overlapping gene in the genomes of insect-specific flaviviruses
Andrew E Firth, Bradley J Blitvich, Norma M Wills, Cathy L Miller, John F Atkins
Virology. Author manuscript; available in PMC 2011 March 30.
Published in final edited form as: Virology. 2010 March 30; 399(1): 153–166. Published online 2010 January 25. doi: 10.1016/j.virol.2009.12.033
PMCID:
PMC2830293
Abstract Full Text PDF–1.6M
Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanning
Andrew E Firth, John F Atkins
Virol J. 2010; 7: 17. Published online 2010 January 25. doi: 10.1186/1743-422X-7-17
PMCID:
PMC2832772
Abstract Full Text PDF–1.9M
Recode-2: new design, new search tools, and many more genes
Michaël Bekaert, Andrew E. Firth, Yan Zhang, Vadim N. Gladyshev, John F. Atkins, Pavel V. Baranov
Nucleic Acids Res. 2010 January; 38(Database issue): D69–D74. Published online 2010 January. doi: 10.1093/nar/gkp788
PMCID:
PMC2808893
Abstract Full Text PDF–1.4M
Evidence for a novel coding sequence overlapping the 5'-terminal ~90 codons of the Gill-associated and Yellow head okavirus envelope glycoprotein gene
Andrew E Firth, John F Atkins
Virol J. 2009; 6: 222. Published online 2009 December 17. doi: 10.1186/1743-422X-6-222
PMCID:
PMC2805633
Abstract Full Text PDF–1.2M
Bioinformatic evidence for a stem-loop structure 5'-adjacent to the IGR-IRES and for an overlapping gene in the bee paralysis dicistroviruses
Andrew E Firth, Qing S Wang, Eric Jan, John F Atkins
Virol J. 2009; 6: 193. Published online 2009 November 6. doi: 10.1186/1743-422X-6-193
PMCID:
PMC2777877
Abstract Full Text PDF–295K
Characterization of untranslated regions of the salmonid alphavirus 3 (SAV3) genome and construction of a SAV3 based replicon
Marius Karlsen, Stephane Villoing, Espen Rimstad, Are Nylund
Virol J. 2009; 6: 173. Published online 2009 October 27. doi: 10.1186/1743-422X-6-173
PMCID:
PMC2772843
Abstract Full Text PDF–649K
A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product
Andrew E Firth, John F Atkins
Virol J. 2009; 6: 136. Published online 2009 September 8. doi: 10.1186/1743-422X-6-136
PMCID:
PMC2749830
Abstract Full Text PDF–367K
A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting
Andrew E Firth, John F Atkins
Virol J. 2009; 6: 14. Published online 2009 February 5. doi: 10.1186/1743-422X-6-14
PMCID:
PMC2657137
Abstract Full Text PDF–311K
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