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The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets – improving meta-analysis and prediction of prognosis
Andrew H Sims, Graeme J Smethurst, Yvonne Hey, Michal J Okoniewski, Stuart D Pepper, Anthony Howell, Crispin J Miller, Robert B Clarke
BMC Med Genomics. 2008; 1: 42. Published online 2008 September 21. doi: 10.1186/1755-8794-1-42
PMCID:
PMC2563019
Abstract Full Text PDF–816K Supplementary Material

Is Cited by the Following 8 Articles in this Archive:

Comprehensive literature review and statistical considerations for microarray meta-analysis
George C. Tseng, Debashis Ghosh, Eleanor Feingold
Nucleic Acids Res. 2012 May; 40(9): 3785–3799. Published online 2012 January 19. doi: 10.1093/nar/gkr1265
PMCID:
PMC3351145
Abstract Full Text PDF–3.7M Supplementary Material
Batch effect correction for genome-wide methylation data with Illumina Infinium platform
Zhifu Sun, High Seng Chai, Yanhong Wu, Wendy M White, Krishna V Donkena, Christopher J Klein, Vesna D Garovic, Terry M Therneau, Jean-Pierre A Kocher
BMC Med Genomics. 2011; 4: 84. Published online 2011 December 16. doi: 10.1186/1755-8794-4-84
PMCID:
PMC3265417
Abstract Full Text PDF–1.5M Supplementary Material
Cyclin D1, Id1 and EMT in breast cancer
Nicholas P Tobin, Andrew H Sims, Katja L Lundgren, Sophie Lehn, Göran Landberg
BMC Cancer. 2011; 11: 417. Published online 2011 September 28. doi: 10.1186/1471-2407-11-417
PMCID:
PMC3192789
Abstract Full Text PDF–1.8M Supplementary Material
Sprouty 2 Is an Independent Prognostic Factor in Breast Cancer and May Be Useful in Stratifying Patients for Trastuzumab Therapy
Dana Faratian, Andrew H. Sims, Peter Mullen, Charlene Kay, InHwa Um, Simon P. Langdon, David J. Harrison
PLoS One. 2011; 6(8): e23772. Published online 2011 August 31. doi: 10.1371/journal.pone.0023772
PMCID:
PMC3166119
Abstract Full Text PDF–833K Supplementary Material
Functional Genomic and Proteomic Analysis Reveals Disruption of Myelin-Related Genes and Translation in a Mouse Model of Early Life Neglect
Kelly A. Bordner, Elizabeth D. George, Becky C. Carlyle, Alvaro Duque, Robert R. Kitchen, TuKiet T. Lam, Christopher M. Colangelo, Kathryn L. Stone, Thomas B. Abbott, Shrikant M. Mane, Angus C. Nairn, Arthur A. Simen
Front Psychiatry. 2011; 2: 18. Published online 2011 April 25. doi: 10.3389/fpsyt.2011.00018
PMCID:
PMC3098717
Abstract Full Text PDF–2.1M
The Embryonic Transcription Cofactor LBH Is a Direct Target of the Wnt Signaling Pathway in Epithelial Development and in Aggressive Basal Subtype Breast Cancers
Megan E. Rieger, Andrew H. Sims, Ebony R. Coats, Robert B. Clarke, Karoline J. Briegel
Mol Cell Biol. 2010 September; 30(17): 4267–4279. Published online 2010 July 6. doi: 10.1128/MCB.01418-09
PMCID:
PMC2937547
Abstract Full Text PDF–2.6M Supplementary Material
Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles
Robert R Kitchen, Vicky S Sabine, Andrew H Sims, E Jane Macaskill, Lorna Renshaw, Jeremy S Thomas, Jano I van Hemert, J Michael Dixon, John MS Bartlett
BMC Genomics. 2010; 11: 134. Published online 2010 February 24. doi: 10.1186/1471-2164-11-134
PMCID:
PMC2843619
Abstract Full Text PDF–1.8M Supplementary Material
Effects of sample size on robustness and prediction accuracy of a prognostic gene signature
Seon-Young Kim
BMC Bioinformatics. 2009; 10: 147. Published online 2009 May 16. doi: 10.1186/1471-2105-10-147
PMCID:
PMC2689196
Abstract Full Text PDF–734K Supplementary Material
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