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The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
Dong Xia, Sanya J Sanderson, Andrew R Jones, Judith H Prieto, John R Yates, Elizabeth Bromley, Fiona M Tomley, Kalpana Lal, Robert E Sinden, Brian P Brunk, David S Roos, Jonathan M Wastling
Genome Biol. 2008; 9(7): R116. Published online 2008 July 21. doi: 10.1186/gb-2008-9-7-r116
PMCID:
PMC2530874
Abstract Full Text PDF–2.7M Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

Proteomic Analysis of Fractionated Toxoplasma Oocysts Reveals Clues to Their Environmental Resistance
Heather M. Fritz, Paul W. Bowyer, Matthew Bogyo, Patricia A. Conrad, John C. Boothroyd
PLoS One. 2012; 7(1): e29955. Published online 2012 January 18. doi: 10.1371/journal.pone.0029955
PMCID:
PMC3261165
Abstract Full Text PDF–585K Supplementary Material
A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry
Raghothama Chaerkady, Dhanashree S. Kelkar, Babylakshmi Muthusamy, Kumaran Kandasamy, Sutopa B. Dwivedi, Nandini A. Sahasrabuddhe, Min-Sik Kim, Santosh Renuse, Sneha M. Pinto, Rakesh Sharma, Harsh Pawar, Nirujogi Raja Sekhar, Ajeet Kumar Mohanty, Derese Getnet, Yi Yang, Jun Zhong, Aditya P. Dash, Robert M. MacCallum, Bernard Delanghe, Godfree Mlambo, Ashwani Kumar, T.S. Keshava Prasad, Mobolaji Okulate, Nirbhay Kumar, Akhilesh Pandey
Genome Res. 2011 November; 21(11): 1872–1881. doi: 10.1101/gr.127951.111
PMCID:
PMC3205572
Abstract Full Text PDF–1.1M
A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF
Lina Zhao, Liguo Liu, Wenchuan Leng, Candong Wei, Qi Jin
BMC Genomics. 2011; 12: 528. Published online 2011 October 28. doi: 10.1186/1471-2164-12-528
PMCID:
PMC3219829
Abstract Full Text PDF–446K Supplementary Material
Identification of Novel Proteins in Neospora caninum Using an Organelle Purification and Monoclonal Antibody Approach
Catherine S. Sohn, Tim T. Cheng, Michael L. Drummond, Eric D. Peng, Sarah J. Vermont, Dong Xia, Stephen J. Cheng, Jonathan M. Wastling, Peter J. Bradley
PLoS One. 2011; 6(4): e18383. Published online 2011 April 4. doi: 10.1371/journal.pone.0018383
PMCID:
PMC3070720
Abstract Full Text PDF–696K Supplementary Material
A novel multifunctional oligonucleotide microarray for Toxoplasma gondii
Amit Bahl, Paul H Davis, Michael Behnke, Florence Dzierszinski, Manjunatha Jagalur, Feng Chen, Dhanasekaran Shanmugam, Michael W White, David Kulp, David S Roos
BMC Genomics. 2010; 11: 603. Published online 2010 October 25. doi: 10.1186/1471-2164-11-603
PMCID:
PMC3017859
Abstract Full Text PDF–2.2M Supplementary Material
Proteomic Analysis of Toxoplasma gondii KI-1 Tachyzoites
Si-Hwan Choi, Tae Yun Kim, Sung Goo Park, Guang-Ho Cha, Dae-Whan Shin, Jong-Yil Chai, Young-Ha Lee
Korean J Parasitol. 2010 September; 48(3): 195–201. Published online 2010 September 16. doi: 10.3347/kjp.2010.48.3.195
PMCID:
PMC2945793
Abstract Full Text PDF–625K
High-Resolution Characterization of Toxoplasma gondii Transcriptome with a Massive Parallel Sequencing Method
Junya Yamagishi, Hiroyuki Wakaguri, Akio Ueno, Youn-Kyoung Goo, Mohammed Tolba, Makoto Igarashi, Yoshifumi Nishikawa, Chihiro Sugimoto, Sumio Sugano, Yutaka Suzuki, Junichi Watanabe, Xuenan Xuan
DNA Res. 2010 August; 17(4): 233–243. Published online 2010 June 3. doi: 10.1093/dnares/dsq013
PMCID:
PMC2920756
Abstract Full Text PDF–223K Supplementary Material
Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models
Nadine Borchert, Christoph Dieterich, Karsten Krug, Wolfgang Schütz, Stephan Jung, Alfred Nordheim, Ralf J. Sommer, Boris Macek
Genome Res. 2010 June; 20(6): 837–846. doi: 10.1101/gr.103119.109
PMCID:
PMC2877580
Abstract Full Text PDF–899K
The role of DNA microarrays in Toxoplasma gondii research, the causative agent of ocular toxoplasmosis
Kevin M. Brown, Ira J. Blader
J Ocul Biol Dis Infor. 2009 December; 2(4): 214–222. Published online 2009 December 12. doi: 10.1007/s12177-009-9040-8
PMCID:
PMC2816810
Abstract Full Text PDF–207K
Members of a Novel Protein Family Containing Microneme Adhesive Repeat Domains Act as Sialic Acid-binding Lectins during Host Cell Invasion by Apicomplexan Parasites
Nikolas Friedrich, Joana M. Santos, Yan Liu, Angelina S. Palma, Ester Leon, Savvas Saouros, Makoto Kiso, Michael J. Blackman, Stephen Matthews, Ten Feizi, Dominique Soldati-Favre
J Biol Chem. 2010 January 15; 285(3): 2064–2076. Published online 2009 November 9. doi: 10.1074/jbc.M109.060988
PMCID:
PMC2804363
Abstract Full Text Supplementary Material
Proteomic comparison of four Eimeria tenella life cycle stages: unsporulated oocyst, sporulated oocyst, sporozoite and second- generation merozoite
Kalpana Lal, Elizabeth Bromley, Richard Oakes, Judith Helena Prieto, Sanya J Sanderson, Dominic Kurian, Lawrence Hunt, John R Yates, III, Jonathan M Wastling, Robert E Sinden, Fiona M Tomley
Proteomics. Author manuscript; available in PMC 2010 September 29.
Published in final edited form as: Proteomics. 2009 October; 9(19): 4566–4576. doi: 10.1002/pmic.200900305
PMCID:
PMC2947549
Abstract Full Text PDF–2.2M Supplementary Material
The origins of apicomplexan sequence innovation
James Wasmuth, Jennifer Daub, José Manuel Peregrín-Alvarez, Constance A.M. Finney, John Parkinson
Genome Res. 2009 July; 19(7): 1202–1213. doi: 10.1101/gr.083386.108
PMCID:
PMC2704437
Abstract Full Text PDF–1.1M
Toxoplasma gondii proteomics
Louis M Weiss, Andras Fiser, Ruth Hogue Angeletti, Kami Kim
Expert Rev Proteomics. Author manuscript; available in PMC 2010 April 1.
Published in final edited form as: Expert Rev Proteomics. 2009 June; 6(3): 303–313. doi: 10.1586/epr.09.16
PMCID:
PMC2741161
Abstract Full Text PDF–331K
Comparison of Proteomic and Transcriptomic Profiles in the Bronchial Airway Epithelium of Current and Never Smokers
Katrina Steiling, Aran Y. Kadar, Agnes Bergerat, James Flanigon, Sriram Sridhar, Vishal Shah, Q. Rushdy Ahmad, Jerome S. Brody, Marc E. Lenburg, Martin Steffen, Avrum Spira
PLoS ONE. 2009; 4(4): e5043. Published online 2009 April 9. doi: 10.1371/journal.pone.0005043
PMCID:
PMC2664466
Abstract Full Text PDF–848K Supplementary Material
EPIC-DB: a proteomics database for studying Apicomplexan organisms
Carlos J Madrid-Aliste, Joseph M Dybas, Ruth Hogue Angeletti, Louis M Weiss, Kami Kim, Istvan Simon, Andras Fiser
BMC Genomics. 2009; 10: 38. Published online 2009 January 21. doi: 10.1186/1471-2164-10-38
PMCID:
PMC2652494
Abstract Full Text PDF–616K
Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii
Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser
PLoS ONE. 2008; 3(12): e3899. Published online 2008 December 9. doi: 10.1371/journal.pone.0003899
PMCID:
PMC2587701
Abstract Full Text PDF–585K Supplementary Material
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