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Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers
Kamila Naxerova, Carol J Bult, Anne Peaston, Karen Fancher, Barbara B Knowles, Simon Kasif, Isaac S Kohane
Genome Biol. 2008; 9(7): R108. Published online 2008 July 8. doi: 10.1186/gb-2008-9-7-r108
PMCID:
PMC2530866
Abstract Full Text PDF–2.1M Supplementary Material

Is Cited by the Following 7 Articles in this Archive:

Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes
Meaghan K. Russell, Mauro Longoni, Julie Wells, Faouzi I. Maalouf, Adam A. Tracy, Maria Loscertales, Kate G. Ackerman, Barbara R. Pober, Kasper Lage, Carol J. Bult, Patricia K. Donahoe
Proc Natl Acad Sci U S A. 2012 February 21; 109(8): 2978–2983. Published online 2012 February 6. doi: 10.1073/pnas.1121621109
PMCID:
PMC3286948
Free in PMC on 2012/08/21
Genome-Wide Analyses of Nkx2-1 Binding to Transcriptional Target Genes Uncover Novel Regulatory Patterns Conserved in Lung Development and Tumors
Jean-Bosco Tagne, Sumeet Gupta, Adam C. Gower, Steven S. Shen, Saaket Varma, Meenakshi Lakshminarayanan, Yuxia Cao, Avrum Spira, Thomas L. Volkert, Maria I. Ramirez
PLoS One. 2012; 7(1): e29907. Published online 2012 January 5. doi: 10.1371/journal.pone.0029907
PMCID:
PMC3252372
Abstract Full Text PDF–1.0M Supplementary Material
Expression analysis of asthma candidate genes during human and murine lung development
Erik Melén, Alvin T Kho, Sunita Sharma, Roger Gaedigk, J Steven Leeder, Thomas J Mariani, Vincent J Carey, Scott T Weiss, Kelan G Tantisira
Respir Res. 2011; 12(1): 86. Published online 2011 June 23. doi: 10.1186/1465-9921-12-86
PMCID:
PMC3141421
Abstract Full Text PDF–335K Supplementary Material
Estimating developmental states of tumors and normal tissues using a linear time-ordered model
Bo Zhang, Beibei Chen, Tao Wu, Zhenyu Xuan, Xiaopeng Zhu, Runsheng Chen
BMC Bioinformatics. 2011; 12: 53. Published online 2011 February 11. doi: 10.1186/1471-2105-12-53
PMCID:
PMC3223864
Abstract Full Text PDF–2.2M Supplementary Material
Reactivation of Embryonic Nodal Signaling is Associated with Tumor Progression and Promotes the Growth of Prostate Cancer Cells
Mitchell G. Lawrence, Naira V. Margaryan, Daniela Loessner, Angus Collins, Kris M. Kerr, Megan Turner, Elisabeth A. Seftor, Carson R. Stephens, John Lai, APC BioResource, Lynne-Marie Postovit, Judith A. Clements, Mary J.C. Hendrix
Prostate. Author manuscript; available in PMC 2012 July 12.
Published in final edited form as: Prostate. 2011 January 12: doi: 10.1002/pros.21335
PMCID:
PMC3234312
Free in PMC on 2012/07/12
A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology
Liron Levkovitz, Nir Yosef, Marvin C. Gershengorn, Eytan Ruppin, Roded Sharan, Yoram Oron
PLoS One. 2010; 5(12): e14423. Published online 2010 December 22. doi: 10.1371/journal.pone.0014423
PMCID:
PMC3008686
Abstract Full Text PDF–498K Supplementary Material
Cancer attractors: A systems view of tumors from a gene network dynamics and developmental perspective
Sui Huang, Ingemar Ernberg, Stuart Kauffman
Semin Cell Dev Biol. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Semin Cell Dev Biol. 2009 September; 20(7): 869–876. Published online 2009 July 10. doi: 10.1016/j.semcdb.2009.07.003
PMCID:
PMC2754594
Abstract Full Text PDF–1.6M Supplementary Material
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