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Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers
Kamila Naxerova, Carol J Bult, Anne Peaston, Karen Fancher, Barbara B Knowles, Simon Kasif, Isaac S Kohane
Genome Biol. 2008; 9(7): R108. Published online 2008 July 8. doi: 10.1186/gb-2008-9-7-r108
PMCID:
PMC2530866
Abstract Full Text PDF–2.1M Supplementary Material
 Is Cited by the Following 5 Articles in this Archive:
Genome-Wide Analyses of Nkx2-1 Binding to Transcriptional Target Genes Uncover Novel Regulatory Patterns Conserved in Lung Development and Tumors
Jean-Bosco Tagne, Sumeet Gupta, Adam C. Gower, Steven S. Shen, Saaket Varma, Meenakshi Lakshminarayanan, Yuxia Cao, Avrum Spira, Thomas L. Volkert, Maria I. Ramirez
PLoS One. 2012; 7(1): e29907. Published online 2012 January 5. doi: 10.1371/journal.pone.0029907
PMCID:
PMC3252372
Abstract Full Text PDF–1.0M Supplementary Material
Expression analysis of asthma candidate genes during human and murine lung development
Erik Melén, Alvin T Kho, Sunita Sharma, Roger Gaedigk, J Steven Leeder, Thomas J Mariani, Vincent J Carey, Scott T Weiss, Kelan G Tantisira
Respir Res. 2011; 12(1): 86. Published online 2011 June 23. doi: 10.1186/1465-9921-12-86
PMCID:
PMC3141421
Abstract Full Text PDF–335K Supplementary Material
Estimating developmental states of tumors and normal tissues using a linear time-ordered model
Bo Zhang, Beibei Chen, Tao Wu, Zhenyu Xuan, Xiaopeng Zhu, Runsheng Chen
BMC Bioinformatics. 2011; 12: 53. Published online 2011 February 11. doi: 10.1186/1471-2105-12-53
PMCID:
PMC3223864
Abstract Full Text PDF–2.2M Supplementary Material
A Novel HMM-Based Method for Detecting Enriched Transcription Factor Binding Sites Reveals RUNX3 as a Potential Target in Pancreatic Cancer Biology
Liron Levkovitz, Nir Yosef, Marvin C. Gershengorn, Eytan Ruppin, Roded Sharan, Yoram Oron
PLoS One. 2010; 5(12): e14423. Published online 2010 December 22. doi: 10.1371/journal.pone.0014423
PMCID:
PMC3008686
Abstract Full Text PDF–498K Supplementary Material
Cancer attractors: A systems view of tumors from a gene network dynamics and developmental perspective
Sui Huang, Ingemar Ernberg, Stuart Kauffman
Semin Cell Dev Biol. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Semin Cell Dev Biol. 2009 September; 20(7): 869–876. Published online 2009 July 10. doi: 10.1016/j.semcdb.2009.07.003
PMCID:
PMC2754594
Abstract Full Text PDF–1.6M Supplementary Material
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