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Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability
Martin H van Vliet, Fabien Reyal, Hugo M Horlings, Marc J van de Vijver, Marcel JT Reinders, Lodewyk FA Wessels
BMC Genomics. 2008; 9: 375. Published online 2008 August 6. doi: 10.1186/1471-2164-9-375
PMCID:
PMC2527336
Abstract Full Text PDF–536K Supplementary Material

Is Cited by the Following 14 Articles in this Archive:

A Critical Evaluation of Network and Pathway-Based Classifiers for Outcome Prediction in Breast Cancer
Christine Staiger, Sidney Cadot, Raul Kooter, Marcus Dittrich, Tobias Müller, Gunnar W. Klau, Lodewyk F. A. Wessels
PLoS One. 2012; 7(4): e34796. Published online 2012 April 27. doi: 10.1371/journal.pone.0034796
PMCID:
PMC3338754
Abstract Full Text PDF–1.2M Supplementary Material
Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer
Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jianrong Li, Tanguy Y. Seiwert, Ezra E. W. Cohen, H. Rosie Xing, Yves A. Lussier
PLoS Comput Biol. 2012 January; 8(1): e1002350. Published online 2012 January 26. doi: 10.1371/journal.pcbi.1002350
PMCID:
PMC3266878
Abstract Full Text PDF–2.2M Supplementary Material
Integration of breast cancer gene signatures based on graph centrality
Jianxin Wang, Gang Chen, Min Li, Yi Pan
BMC Syst Biol. 2011; 5(Suppl 3): S10. Published online 2011 December 23. doi: 10.1186/1752-0509-5-S3-S10
PMCID:
PMC3287565
Abstract Full Text PDF–1.2M Supplementary Material
An Evaluation Protocol for Subtype-Specific Breast Cancer Event Prediction
Herman M. J. Sontrop, Wim F. J. Verhaegh, Marcel J. T. Reinders, Perry D. Moerland
PLoS One. 2011; 6(7): e21681. Published online 2011 July 8. doi: 10.1371/journal.pone.0021681
PMCID:
PMC3132736
Abstract Full Text PDF–1.8M Supplementary Material
Integrative computational biology for cancer research
Kristen Fortney, Igor Jurisica
Hum Genet. 2011 October; 130(4): 465–481. Published online 2011 April 22. doi: 10.1007/s00439-011-0983-z
PMCID:
PMC3179275
Abstract Full Text PDF–2.3M Supplementary Material
Combining Gene Signatures Improves Prediction of Breast Cancer Survival
Xi Zhao, Einar Andreas Rødland, Therese Sørlie, Bjørn Naume, Anita Langerød, Arnoldo Frigessi, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Ole Christian Lingjærde
PLoS One. 2011; 6(3): e17845. Published online 2011 March 10. doi: 10.1371/journal.pone.0017845
PMCID:
PMC3053398
Abstract Full Text PDF–1.6M Supplementary Material
Gene Expression Meta-Analysis Identifies VDAC1 as a Predictor of Poor Outcome in Early Stage Non-Small Cell Lung Cancer
Claire Grills, Puthen V. Jithesh, Jaine Blayney, Shu-Dong Zhang, Dean A. Fennell
PLoS One. 2011; 6(1): e14635. Published online 2011 January 31. doi: 10.1371/journal.pone.0014635
PMCID:
PMC3031508
Abstract Full Text PDF–234K
Effect of Data Combination on Predictive Modeling: A Study Using Gene Expression Data
Melanie Osl, Stephan Dreiseitl, Jihoon Kim, Kiltesh Patel, Christian Baumgartner, Lucila Ohno-Machado
AMIA Annu Symp Proc. 2010; 2010: 567–571. Published online 2010 November 13.
PMCID:
PMC3041313
Abstract Full Text PDF–382K
Protein Interaction Network Underpins Concordant Prognosis Among Heterogeneous Breast Cancer Signatures
James Chen, Lee Sam, Yong Huang, Younghee Lee, Jianrong Li, Yang Liu, H. Rosie Xing, Yves A. Lussier
J Biomed Inform. Author manuscript; available in PMC 2011 June 1.
Published in final edited form as: J Biomed Inform. 2010 June; 43(3): 385–396. Published online 2010 March 27. doi: 10.1016/j.jbi.2010.03.009
PMCID:
PMC2878851
Abstract Full Text PDF–1.3M Supplementary Material
Amplification of LAPTM4B and YWHAZ contributes to chemotherapy resistance and recurrence of breast cancer
Yang Li, Lihua Zou, Qiyuan Li, Benjamin Haibe-Kains, Ruiyang Tian, Yan Li, Christine Desmedt, Christos Sotiriou, Zoltan Szallasi, J. Dirk Iglehart, Andrea L. Richardson, Zhigang Charles Wang
Nat Med. Author manuscript; available in PMC 2010 August 1.
Published in final edited form as: Nat Med. 2010 February; 16(2): 214–218. Published online 2010 January 24. doi: 10.1038/nm.2090
PMCID:
PMC2826790
Abstract Full Text PDF–2.2M Supplementary Material
A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability
Herman MJ Sontrop, Perry D Moerland, René van den Ham, Marcel JT Reinders, Wim FJ Verhaegh
BMC Bioinformatics. 2009; 10: 389. Published online 2009 November 26. doi: 10.1186/1471-2105-10-389
PMCID:
PMC2789744
Abstract Full Text PDF–923K Supplementary Material
Can Survival Prediction Be Improved By Merging Gene Expression Data Sets?
Haleh Yasrebi, Peter Sperisen, Viviane Praz, Philipp Bucher
PLoS One. 2009; 4(10): e7431. Published online 2009 October 23. doi: 10.1371/journal.pone.0007431
PMCID:
PMC2761544
Abstract Full Text PDF–645K Supplementary Material
Effects of sample size on robustness and prediction accuracy of a prognostic gene signature
Seon-Young Kim
BMC Bioinformatics. 2009; 10: 147. Published online 2009 May 16. doi: 10.1186/1471-2105-10-147
PMCID:
PMC2689196
Abstract Full Text PDF–734K Supplementary Material
A comprehensive analysis of prognostic signatures reveals the high predictive capacity of the Proliferation, Immune response and RNA splicing modules in breast cancer
Fabien Reyal, Martin H van Vliet, Nicola J Armstrong, Hugo M Horlings, Karin E de Visser, Marlen Kok, Andrew E Teschendorff, Stella Mook, Laura van 't Veer, Carlos Caldas, Remy J Salmon, Marc J van de Vijver, Lodewyk FA Wessels
Breast Cancer Res. 2008; 10(6): R93. Published online 2008 November 13. doi: 10.1186/bcr2192
PMCID:
PMC2656909
Abstract Full Text PDF–1.5M Supplementary Material
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