Cited by ..

Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype

Edward K Lobenhofer, J Todd Auman, Pamela E Blackshear, Gary A Boorman, Pierre R Bushel, Michael L Cunningham, Jennifer M Fostel, Kevin Gerrish, Alexandra N Heinloth, Richard D Irwin, David E Malarkey, B Alex Merrick, Stella O Sieber, Charles J Tucker, Sandra M Ward, Ralph E Wilson, Patrick Hurban, Raymond W Tennant, Richard S Paules

Genome Biol. 2008; 9(6): R100. Published online 2008 June 20. doi: 10.1186/gb-2008-9-6-r100

PMCID:: PMC2481421

Abstract Full Text PDF–1.4M Supplementary Material

Is Cited by the Following 11 Articles in this Archive:

Selecting a single model or combining multiple models for microarray-based classifier development? – A comparative analysis based on large and diverse datasets generated from the MAQC-II project

Minjun Chen, Leming Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong

BMC Bioinformatics. 2011; 12(Suppl 10): S3. Published online 2011 October 18. doi: 10.1186/1471-2105-12-S10-S3

PMCID:: PMC3236846

Abstract Full Text PDF–2.8M Supplementary Material

Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction

Xiaohui Fan, Li Shao, Hong Fang, Weida Tong, Yiyu Cheng

PLoS One. 2011; 6(1): e16067. Published online 2011 January 11. doi: 10.1371/journal.pone.0016067

PMCID:: PMC3019174

Abstract Full Text PDF–617K Supplementary Material

Mapping Drug Physico-Chemical Features to Pathway Activity Reveals Molecular Networks Linked to Toxicity Outcome

Philipp Antczak, Fernando Ortega, J. Kevin Chipman, Francesco Falciani

PLoS One. 2010; 5(8): e12385. Published online 2010 August 27. doi: 10.1371/journal.pone.0012385

PMCID:: PMC2929951

Abstract Full Text PDF–1.3M Supplementary Material

Genomic indicators in the blood predict drug-induced liver injury

Jianping Huang, Weiwei Shi, John Zhang, Jeff W. Chou, Richard S. Paules, Kevin Gerrish, Jianying Li, Jun Luo, Russell D. Wolfinger, Wenjun Bao, Tzu-Ming Chu, Yuri Nikolsky, Tatiana Nikolskaya, Damir Dosymbekov, Marina O. Tsyganova, Leming Shi, Xiaohui Fan, J. Christopher Corton, Minjun Chen, Yiyu Cheng, Weida Tong, Hong Fang, Pierre R. Bushel

Pharmacogenomics J. Author manuscript; available in PMC 2011 September 27.

Published in final edited form as: Pharmacogenomics J. 2010 August; 10(4): 267–277. doi: 10.1038/tpj.2010.33

PMCID:: PMC3180890

Abstract Full Text PDF–1.3M Supplementary Material

Consistency of predictive signature genes and classifiers generated using different microarray platforms

X Fan, E K Lobenhofer, M Chen, W Shi, J Huang, J Luo, J Zhang, S J Walker, T-M Chu, L Li, R Wolfinger, W Bao, R S Paules, P R Bushel, J Li, T Shi, T Nikolskaya, Y Nikolsky, H Hong, Y Deng, Y Cheng, H Fang, L Shi, W Tong

Pharmacogenomics J. 2010 August; 10(4): 247–257. Published online 2010 July 30. doi: 10.1038/tpj.2010.34

PMCID:: PMC2920073

Abstract Full Text PDF–1.0M Supplementary Material

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, T Shi, W Tong, L Shi, H Hong, C Zhao, F Elloumi, W Shi, R Thomas, S Lin, G Tillinghast, G Liu, Y Zhou, D Herman, Y Li, Y Deng, H Fang, P Bushel, M Woods, J Zhang

Pharmacogenomics J. 2010 August; 10(4): 278–291. Published online 2010 July 30. doi: 10.1038/tpj.2010.57

PMCID:: PMC2920074

Abstract Full Text PDF–895K

Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes

W Shi, M Bessarabova, D Dosymbekov, Z Dezso, T Nikolskaya, M Dudoladova, T Serebryiskaya, A Bugrim, A Guryanov, R J Brennan, R Shah, J Dopazo, M Chen, Y Deng, T Shi, G Jurman, C Furlanello, R S Thomas, J C Corton, W Tong, L Shi, Y Nikolsky

Pharmacogenomics J. 2010 August; 10(4): 310–323. Published online 2010 July 30. doi: 10.1038/tpj.2010.35

PMCID:: PMC2920075

Abstract Full Text PDF–1010K Supplementary Material

Use of transcriptomics in understanding mechanisms of drug-induced toxicity

Yuxia Cui, Richard S Paules

Pharmacogenomics. Author manuscript; available in PMC 2011 February 1.

Published in final edited form as: Pharmacogenomics. 2010 April; 11(4): 573–585. doi: 10.2217/pgs.10.37

PMCID:: PMC2884389

Abstract Full Text PDF–334K

Acetaminophen dosing of humans results in blood transcriptome and metabolome changes consistent with impaired oxidative phosphorylation

Rick D. Fannin, Mark Russo, Thomas M. O’Connell, Kevin Gerrish, Jason H. Winnike, Jeffrey Macdonald, Jack Newton, Shahid Malik, Stella O. Sieber, Joel Parker, Ruchir Shah, Tong Zhou, Paul B. Watkins, Richard S. Paules

Hepatology. Author manuscript; available in PMC 2011 January 1.

Published in final edited form as: Hepatology. 2010 January; 51(1): 227–236. doi: 10.1002/hep.23330