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Comp Funct Genomics. 2004 Apr; 5(3): 285–291.
PMCID: PMC2447452

Solanaceae—A Model for Linking Genomics With Biodiversity


Recent progress in understanding the phylogeny of the economically important plant family Solanaceae makes this an ideal time to develop models for linking the new data on plant genomics with the huge diversity of naturally occurring species in the family. Phylogenetics provides the framework with which to investigate these linkages but, critically, good species-level descriptive resources for the Solanaceae community are currently missing. Phylogeny in the family as a whole is briefly reviewed, and the new NSF Planetary Biodiversity Inventories project ‘PBI: Solanum—a worldwide treatment’ is described. The aims of this project are to provide species-level information across the global scope of the genus Solanum and to make this available over the Internet. The project is in its infancy, but will make available nomenclatural information, descriptions, keys and illustrative material for all of the approximately 1500 species of Solanum. With this project, the opportunity of linking valid, up-to-date taxonomic information about wild species of Solanum with the genomic information being generated about the economically important species of the genus (potato, tomato and eggplant) can be realized. The phylogenetic framework in which the PBI project is set is also of enormous potential benefit to other workers on Solanum. The community of biologists working with Solanaceae has a unique opportunity to effectively link genomics and taxonomy for better understanding of this important family, taking plant biology to a new level for the next century.

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Selected References

These references are in PubMed. This may not be the complete list of references from this article.
  • The Plant Ontology Consortium and plant ontologies. Comp Funct Genomics. 2002;3(2):137–142. [PMC free article] [PubMed]
  • Daly DC, Cameron KM, Stevenson DW. Plant systematics in the age of genomics. Plant Physiol. 2001 Dec;127(4):1328–1333. [PMC free article] [PubMed]
  • Jaiswal Pankaj, Ware Doreen, Ni Junjian, Chang Kuan, Zhao Wei, Schmidt Steven, Pan Xiaokang, Clark Kenneth, Teytelman Leonid, Cartinhour Samuel, Stein Lincoln, McCouch Susan. Gramene: development and integration of trait and gene ontologies for rice. Comp Funct Genomics. 2002;3(2):132–136. [PMC free article] [PubMed]
  • Knapp Sandra. Tobacco to tomatoes: a phylogenetic perspective on fruit diversity in the Solanaceae. J Exp Bot. 2002 Oct;53(377):2001–2022. [PubMed]
  • Maes T, Van de Steene N, Zethof J, Karimi M, D'Hauw M, Mares G, Van Montagu M, Gerats T. Petunia Ap2-like genes and their role in flower and seed development. Plant Cell. 2001 Feb;13(2):229–244. [PMC free article] [PubMed]
  • Ruedas LA, Salazar-Bravo J, Dragoo JW, Yates TL. The importance of being earnest: what, if anything, constitutes a "specimen examined?". Mol Phylogenet Evol. 2000 Oct;17(1):129–132. [PubMed]
  • Soltis Douglas E, Soltis Pamela S. The role of phylogenetics in comparative genetics. Plant Physiol. 2003 Aug;132(4):1790–1800. [PMC free article] [PubMed]
  • Vandenbussche Michiel, Zethof Jan, Souer Erik, Koes Ronald, Tornielli Giovanni B, Pezzotti Mario, Ferrario Silvia, Angenent Gerco C, Gerats Tom. Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia. Plant Cell. 2003 Nov;15(11):2680–2693. [PMC free article] [PubMed]

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