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Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar, Stephan Waack
BMC Bioinformatics. 2008; 9: 278. Published online 2008 June 13. doi: 10.1186/1471-2105-9-278
PMCID:
PMC2442105
Abstract Full Text PDF–522K Supplementary Material

Is Cited by the Following 7 Articles in this Archive:

RNA-Seq improves annotation of protein-coding genes in the cucumber genome
Zhen Li, Zhonghua Zhang, Pengcheng Yan, Sanwen Huang, Zhangjun Fei, Kui Lin
BMC Genomics. 2011; 12: 540. Published online 2011 November 2. doi: 10.1186/1471-2164-12-540
PMCID:
PMC3219749
Abstract Full Text PDF–1.4M Supplementary Material
A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function
Christian Eckert, Björn Hammesfahr, Martin Kollmar
BMC Evol Biol. 2011; 11: 268. Published online 2011 September 25. doi: 10.1186/1471-2148-11-268
PMCID:
PMC3203266
Abstract Full Text PDF–943K Supplementary Material
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio
Klas Hatje, Oliver Keller, Björn Hammesfahr, Holger Pillmann, Stephan Waack, Martin Kollmar
BMC Res Notes. 2011; 4: 265. Published online 2011 July 28. doi: 10.1186/1756-0500-4-265
PMCID:
PMC3162530
Abstract Full Text PDF–844K Supplementary Material
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology
Holger Pillmann, Klas Hatje, Florian Odronitz, Björn Hammesfahr, Martin Kollmar
BMC Bioinformatics. 2011; 12: 270. Published online 2011 June 30. doi: 10.1186/1471-2105-12-270
PMCID:
PMC3228551
Abstract Full Text PDF–1024K Supplementary Material
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
Julie D. Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch
PLoS One. 2011; 6(3): e18093. Published online 2011 March 31. doi: 10.1371/journal.pone.0018093
PMCID:
PMC3069049
Abstract Full Text PDF–2.3M
Evolution of spliceosomal introns following endosymbiotic gene transfer
Nahal Ahmadinejad, Tal Dagan, Nicole Gruenheit, William Martin, Toni Gabaldón
BMC Evol Biol. 2010; 10: 57. Published online 2010 February 23. doi: 10.1186/1471-2148-10-57
PMCID:
PMC2834692
Abstract Full Text PDF–780K Supplementary Material
WebScipio: An online tool for the determination of gene structures using protein sequences
Florian Odronitz, Holger Pillmann, Oliver Keller, Stephan Waack, Martin Kollmar
BMC Genomics. 2008; 9: 422. Published online 2008 September 18. doi: 10.1186/1471-2164-9-422
PMCID:
PMC2644328
Abstract Full Text PDF–1.3M Supplementary Material
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